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P42589 (YGJH_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
tRNA-binding protein YgjH
Gene names
Name:ygjH
Ordered Locus Names:b3074, JW3045
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length110 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Homodimer.

Sequence similarities

Contains 1 tRNA-binding domain.

Ontologies

Keywords
   LigandRNA-binding
tRNA-binding
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functiontRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 110110tRNA-binding protein YgjH
PRO_0000169420

Regions

Domain8 – 110103tRNA-binding

Secondary structure

....................... 110
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P42589 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: 4C0F48971942EA98

FASTA11012,315
        10         20         30         40         50         60 
METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV PYYSEEELMG 

        70         80         90        100        110 
KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE RMMPAGVRVV 

« Hide

References

« Hide 'large scale' references
[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]"Crystal structure of trbp111: a structure-specific tRNA-binding protein."
Swairjo M.A., Morales A.J., Wang C.C., Ortiz A.R., Schimmel P.
EMBO J. 19:6287-6298(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.87 ANGSTROMS).
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U18997 Genomic DNA. Translation: AAA57875.1.
U00096 Genomic DNA. Translation: AAC76109.1.
AP009048 Genomic DNA. Translation: BAE77124.1.
PIRG65095.
RefSeqNP_417545.1. NC_000913.3.
YP_491265.1. NC_007779.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ERSX-ray1.87X1-110[»]
ProteinModelPortalP42589.
SMRP42589. Positions 1-110.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-12234N.
IntActP42589. 2 interactions.
MINTMINT-1283890.
STRING511145.b3074.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC76109; AAC76109; b3074.
BAE77124; BAE77124; BAE77124.
GeneID12934452.
946251.
KEGGecj:Y75_p2999.
eco:b3074.
PATRIC32121564. VBIEscCol129921_3168.

Organism-specific databases

EchoBASEEB2578.
EcoGeneEG12719. ygjH.

Phylogenomic databases

eggNOGCOG0073.
HOGENOMHOG000269896.
KOK06878.
OMARHANADK.
OrthoDBEOG6M0T7Q.
PhylomeDBP42589.

Enzyme and pathway databases

BioCycEcoCyc:G7597-MONOMER.
ECOL316407:JW3045-MONOMER.

Gene expression databases

GenevestigatorP42589.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012340. NA-bd_OB-fold.
IPR002547. tRNA-bd_dom.
[Graphical view]
PfamPF01588. tRNA_bind. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP42589.
PROP42589.

Entry information

Entry nameYGJH_ECOLI
AccessionPrimary (citable) accession number: P42589
Secondary accession number(s): Q2M9D2
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: May 14, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene