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Protein

tRNA-binding protein YgjH

Gene

ygjH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. tRNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

RNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7597-MONOMER.
ECOL316407:JW3045-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA-binding protein YgjH
Gene namesi
Name:ygjH
Ordered Locus Names:b3074, JW3045
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG12719. ygjH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 110110tRNA-binding protein YgjHPRO_0000169420Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP42589.

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

DIPiDIP-12234N.
IntActiP42589. 2 interactions.
MINTiMINT-1283890.
STRINGi511145.b3074.

Structurei

Secondary structure

1
110
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 105Combined sources
Beta strandi14 – 2310Combined sources
Beta strandi32 – 376Combined sources
Beta strandi39 – 479Combined sources
Turni50 – 523Combined sources
Helixi55 – 584Combined sources
Beta strandi62 – 665Combined sources
Beta strandi72 – 743Combined sources
Beta strandi77 – 793Combined sources
Beta strandi85 – 873Combined sources
Beta strandi94 – 963Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ERSX-ray1.87X1-110[»]
ProteinModelPortaliP42589.
SMRiP42589. Positions 1-110.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42589.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 110103tRNA-bindingPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 tRNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0073.
HOGENOMiHOG000269896.
InParanoidiP42589.
KOiK06878.
OMAiAGLAEYY.
OrthoDBiEOG6M0T7Q.
PhylomeDBiP42589.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR002547. tRNA-bd_dom.
[Graphical view]
PfamiPF01588. tRNA_bind. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50886. TRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42589-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV
60 70 80 90 100
PYYSEEELMG KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE
110
RMMPAGVRVV
Length:110
Mass (Da):12,315
Last modified:November 1, 1995 - v1
Checksum:i4C0F48971942EA98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57875.1.
U00096 Genomic DNA. Translation: AAC76109.1.
AP009048 Genomic DNA. Translation: BAE77124.1.
PIRiG65095.
RefSeqiNP_417545.1. NC_000913.3.
YP_491265.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC76109; AAC76109; b3074.
BAE77124; BAE77124; BAE77124.
GeneIDi12934452.
946251.
KEGGiecj:Y75_p2999.
eco:b3074.
PATRICi32121564. VBIEscCol129921_3168.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57875.1.
U00096 Genomic DNA. Translation: AAC76109.1.
AP009048 Genomic DNA. Translation: BAE77124.1.
PIRiG65095.
RefSeqiNP_417545.1. NC_000913.3.
YP_491265.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ERSX-ray1.87X1-110[»]
ProteinModelPortaliP42589.
SMRiP42589. Positions 1-110.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-12234N.
IntActiP42589. 2 interactions.
MINTiMINT-1283890.
STRINGi511145.b3074.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76109; AAC76109; b3074.
BAE77124; BAE77124; BAE77124.
GeneIDi12934452.
946251.
KEGGiecj:Y75_p2999.
eco:b3074.
PATRICi32121564. VBIEscCol129921_3168.

Organism-specific databases

EchoBASEiEB2578.
EcoGeneiEG12719. ygjH.

Phylogenomic databases

eggNOGiCOG0073.
HOGENOMiHOG000269896.
InParanoidiP42589.
KOiK06878.
OMAiAGLAEYY.
OrthoDBiEOG6M0T7Q.
PhylomeDBiP42589.

Enzyme and pathway databases

BioCyciEcoCyc:G7597-MONOMER.
ECOL316407:JW3045-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP42589.
PROiP42589.

Gene expression databases

GenevestigatoriP42589.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR002547. tRNA-bd_dom.
[Graphical view]
PfamiPF01588. tRNA_bind. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Crystal structure of trbp111: a structure-specific tRNA-binding protein."
    Swairjo M.A., Morales A.J., Wang C.C., Ortiz A.R., Schimmel P.
    EMBO J. 19:6287-6298(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.87 ANGSTROMS).

Entry informationi

Entry nameiYGJH_ECOLI
AccessioniPrimary (citable) accession number: P42589
Secondary accession number(s): Q2M9D2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: January 7, 2015
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.