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P42589

- YGJH_ECOLI

UniProt

P42589 - YGJH_ECOLI

Protein

tRNA-binding protein YgjH

Gene

ygjH

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. tRNA binding Source: UniProtKB-KW

    Keywords - Ligandi

    RNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciEcoCyc:G7597-MONOMER.
    ECOL316407:JW3045-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    tRNA-binding protein YgjH
    Gene namesi
    Name:ygjH
    Ordered Locus Names:b3074, JW3045
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG12719. ygjH.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 110110tRNA-binding protein YgjHPRO_0000169420Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriP42589.

    Interactioni

    Subunit structurei

    Homodimer.

    Protein-protein interaction databases

    DIPiDIP-12234N.
    IntActiP42589. 2 interactions.
    MINTiMINT-1283890.
    STRINGi511145.b3074.

    Structurei

    Secondary structure

    1
    110
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 105
    Beta strandi14 – 2310
    Beta strandi32 – 376
    Beta strandi39 – 479
    Turni50 – 523
    Helixi55 – 584
    Beta strandi62 – 665
    Beta strandi72 – 743
    Beta strandi77 – 793
    Beta strandi85 – 873
    Beta strandi94 – 963

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ERSX-ray1.87X1-110[»]
    ProteinModelPortaliP42589.
    SMRiP42589. Positions 1-110.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP42589.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini8 – 110103tRNA-bindingPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 tRNA-binding domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0073.
    HOGENOMiHOG000269896.
    KOiK06878.
    OMAiRHANADK.
    OrthoDBiEOG6M0T7Q.
    PhylomeDBiP42589.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR002547. tRNA-bd_dom.
    [Graphical view]
    PfamiPF01588. tRNA_bind. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50886. TRBD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P42589-1 [UniParc]FASTAAdd to Basket

    « Hide

    METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV    50
    PYYSEEELMG KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE 100
    RMMPAGVRVV 110
    Length:110
    Mass (Da):12,315
    Last modified:November 1, 1995 - v1
    Checksum:i4C0F48971942EA98
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U18997 Genomic DNA. Translation: AAA57875.1.
    U00096 Genomic DNA. Translation: AAC76109.1.
    AP009048 Genomic DNA. Translation: BAE77124.1.
    PIRiG65095.
    RefSeqiNP_417545.1. NC_000913.3.
    YP_491265.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC76109; AAC76109; b3074.
    BAE77124; BAE77124; BAE77124.
    GeneIDi12934452.
    946251.
    KEGGiecj:Y75_p2999.
    eco:b3074.
    PATRICi32121564. VBIEscCol129921_3168.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U18997 Genomic DNA. Translation: AAA57875.1 .
    U00096 Genomic DNA. Translation: AAC76109.1 .
    AP009048 Genomic DNA. Translation: BAE77124.1 .
    PIRi G65095.
    RefSeqi NP_417545.1. NC_000913.3.
    YP_491265.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ERS X-ray 1.87 X 1-110 [» ]
    ProteinModelPortali P42589.
    SMRi P42589. Positions 1-110.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-12234N.
    IntActi P42589. 2 interactions.
    MINTi MINT-1283890.
    STRINGi 511145.b3074.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC76109 ; AAC76109 ; b3074 .
    BAE77124 ; BAE77124 ; BAE77124 .
    GeneIDi 12934452.
    946251.
    KEGGi ecj:Y75_p2999.
    eco:b3074.
    PATRICi 32121564. VBIEscCol129921_3168.

    Organism-specific databases

    EchoBASEi EB2578.
    EcoGenei EG12719. ygjH.

    Phylogenomic databases

    eggNOGi COG0073.
    HOGENOMi HOG000269896.
    KOi K06878.
    OMAi RHANADK.
    OrthoDBi EOG6M0T7Q.
    PhylomeDBi P42589.

    Enzyme and pathway databases

    BioCyci EcoCyc:G7597-MONOMER.
    ECOL316407:JW3045-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P42589.
    PROi P42589.

    Gene expression databases

    Genevestigatori P42589.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR002547. tRNA-bd_dom.
    [Graphical view ]
    Pfami PF01588. tRNA_bind. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50886. TRBD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    3. "Crystal structure of trbp111: a structure-specific tRNA-binding protein."
      Swairjo M.A., Morales A.J., Wang C.C., Ortiz A.R., Schimmel P.
      EMBO J. 19:6287-6298(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.87 ANGSTROMS).

    Entry informationi

    Entry nameiYGJH_ECOLI
    AccessioniPrimary (citable) accession number: P42589
    Secondary accession number(s): Q2M9D2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1995
    Last modified: October 1, 2014
    This is version 103 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3