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Protein

tRNA-binding protein YgjH

Gene

ygjH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7597-MONOMER.
ECOL316407:JW3045-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA-binding protein YgjH
Gene namesi
Name:ygjH
Ordered Locus Names:b3074, JW3045
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12719. ygjH.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001694201 – 110tRNA-binding protein YgjHAdd BLAST110

Proteomic databases

PaxDbiP42589.
PRIDEiP42589.

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

BioGridi4263446. 16 interactors.
DIPiDIP-12234N.
IntActiP42589. 2 interactors.
MINTiMINT-1283890.
STRINGi511145.b3074.

Structurei

Secondary structure

1110
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 10Combined sources5
Beta strandi14 – 23Combined sources10
Beta strandi32 – 37Combined sources6
Beta strandi39 – 47Combined sources9
Turni50 – 52Combined sources3
Helixi55 – 58Combined sources4
Beta strandi62 – 66Combined sources5
Beta strandi72 – 74Combined sources3
Beta strandi77 – 79Combined sources3
Beta strandi85 – 87Combined sources3
Beta strandi94 – 96Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ERSX-ray1.87X1-110[»]
ProteinModelPortaliP42589.
SMRiP42589.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42589.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 110tRNA-bindingPROSITE-ProRule annotationAdd BLAST103

Sequence similaritiesi

Contains 1 tRNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108Y51. Bacteria.
COG0073. LUCA.
HOGENOMiHOG000269896.
InParanoidiP42589.
KOiK06878.
OMAiAGLAEYY.
PhylomeDBiP42589.

Family and domain databases

InterProiIPR012340. NA-bd_OB-fold.
IPR002547. tRNA-bd_dom.
[Graphical view]
PfamiPF01588. tRNA_bind. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50886. TRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42589-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV
60 70 80 90 100
PYYSEEELMG KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE
110
RMMPAGVRVV
Length:110
Mass (Da):12,315
Last modified:November 1, 1995 - v1
Checksum:i4C0F48971942EA98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57875.1.
U00096 Genomic DNA. Translation: AAC76109.1.
AP009048 Genomic DNA. Translation: BAE77124.1.
PIRiG65095.
RefSeqiNP_417545.1. NC_000913.3.
WP_000450594.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76109; AAC76109; b3074.
BAE77124; BAE77124; BAE77124.
GeneIDi946251.
KEGGiecj:JW3045.
eco:b3074.
PATRICi32121564. VBIEscCol129921_3168.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57875.1.
U00096 Genomic DNA. Translation: AAC76109.1.
AP009048 Genomic DNA. Translation: BAE77124.1.
PIRiG65095.
RefSeqiNP_417545.1. NC_000913.3.
WP_000450594.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ERSX-ray1.87X1-110[»]
ProteinModelPortaliP42589.
SMRiP42589.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263446. 16 interactors.
DIPiDIP-12234N.
IntActiP42589. 2 interactors.
MINTiMINT-1283890.
STRINGi511145.b3074.

Proteomic databases

PaxDbiP42589.
PRIDEiP42589.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76109; AAC76109; b3074.
BAE77124; BAE77124; BAE77124.
GeneIDi946251.
KEGGiecj:JW3045.
eco:b3074.
PATRICi32121564. VBIEscCol129921_3168.

Organism-specific databases

EchoBASEiEB2578.
EcoGeneiEG12719. ygjH.

Phylogenomic databases

eggNOGiENOG4108Y51. Bacteria.
COG0073. LUCA.
HOGENOMiHOG000269896.
InParanoidiP42589.
KOiK06878.
OMAiAGLAEYY.
PhylomeDBiP42589.

Enzyme and pathway databases

BioCyciEcoCyc:G7597-MONOMER.
ECOL316407:JW3045-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP42589.
PROiP42589.

Family and domain databases

InterProiIPR012340. NA-bd_OB-fold.
IPR002547. tRNA-bd_dom.
[Graphical view]
PfamiPF01588. tRNA_bind. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGJH_ECOLI
AccessioniPrimary (citable) accession number: P42589
Secondary accession number(s): Q2M9D2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.