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Protein

tRNA-binding protein YgjH

Gene

ygjH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7597-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA-binding protein YgjH
Gene namesi
Name:ygjH
Ordered Locus Names:b3074, JW3045
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12719 ygjH

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001694201 – 110tRNA-binding protein YgjHAdd BLAST110

Proteomic databases

PaxDbiP42589
PRIDEiP42589

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

BioGridi4263446, 16 interactors
DIPiDIP-12234N
IntActiP42589, 2 interactors
STRINGi316385.ECDH10B_3249

Structurei

Secondary structure

1110
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 10Combined sources5
Beta strandi14 – 23Combined sources10
Beta strandi32 – 37Combined sources6
Beta strandi39 – 47Combined sources9
Turni50 – 52Combined sources3
Helixi55 – 58Combined sources4
Beta strandi62 – 66Combined sources5
Beta strandi72 – 74Combined sources3
Beta strandi77 – 79Combined sources3
Beta strandi85 – 87Combined sources3
Beta strandi94 – 96Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ERSX-ray1.87X1-110[»]
ProteinModelPortaliP42589
SMRiP42589
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42589

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 110tRNA-bindingPROSITE-ProRule annotationAdd BLAST103

Phylogenomic databases

eggNOGiENOG4108Y51 Bacteria
COG0073 LUCA
HOGENOMiHOG000269896
InParanoidiP42589
KOiK06878
OMAiAGLAEYY
PhylomeDBiP42589

Family and domain databases

InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR002547 tRNA-bd_dom
PfamiView protein in Pfam
PF01588 tRNA_bind, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
PROSITEiView protein in PROSITE
PS50886 TRBD, 1 hit

Sequencei

Sequence statusi: Complete.

P42589-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV
60 70 80 90 100
PYYSEEELMG KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE
110
RMMPAGVRVV
Length:110
Mass (Da):12,315
Last modified:November 1, 1995 - v1
Checksum:i4C0F48971942EA98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA Translation: AAA57875.1
U00096 Genomic DNA Translation: AAC76109.1
AP009048 Genomic DNA Translation: BAE77124.1
PIRiG65095
RefSeqiNP_417545.1, NC_000913.3
WP_000450594.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76109; AAC76109; b3074
BAE77124; BAE77124; BAE77124
GeneIDi946251
KEGGiecj:JW3045
eco:b3074
PATRICifig|1411691.4.peg.3656

Similar proteinsi

Entry informationi

Entry nameiYGJH_ECOLI
AccessioniPrimary (citable) accession number: P42589
Secondary accession number(s): Q2M9D2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: March 28, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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