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Protein

Phytochrome E

Gene

PHYE

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei322Phytochromobilin chromophore (covalent; via 1 link)By similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionPhotoreceptor protein, Receptor
Biological processSensory transduction, Transcription, Transcription regulation
LigandChromophore

Names & Taxonomyi

Protein namesi
Recommended name:
Phytochrome E
Gene namesi
Name:PHYE
Ordered Locus Names:At4g18130
ORF Names:F15J5.100
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G18130
TAIRilocus:2005536 AT4G18130

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001719661 – 1112Phytochrome EAdd BLAST1112

Post-translational modificationi

Contains one covalently linked phytochromobilin chromophore.By similarity

Proteomic databases

PaxDbiP42498
PRIDEiP42498

PTM databases

iPTMnetiP42498

Expressioni

Gene expression databases

ExpressionAtlasiP42498 baseline and differential
GenevisibleiP42498 AT

Interactioni

Subunit structurei

Homodimer.

Binary interactionsi

Show more details

GO - Molecular functioni

Protein-protein interaction databases

BioGridi12831, 6 interactors
IntActiP42498, 2 interactors
STRINGi3702.AT4G18130.1

Structurei

3D structure databases

ProteinModelPortaliP42498
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini217 – 387GAFAdd BLAST171
Domaini595 – 666PAS 1PROSITE-ProRule annotationAdd BLAST72
Domaini732 – 803PAS 2PROSITE-ProRule annotationAdd BLAST72
Domaini877 – 1096Histidine kinasePROSITE-ProRule annotationAdd BLAST220

Sequence similaritiesi

Belongs to the phytochrome family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IPET Eukaryota
COG0642 LUCA
COG4251 LUCA
HOGENOMiHOG000272703
InParanoidiP42498
KOiK12123
OMAiIGKMLPG
OrthoDBiEOG09360112

Family and domain databases

CDDicd00075 HATPase_c, 1 hit
cd00082 HisKA, 1 hit
cd00130 PAS, 2 hits
Gene3Di3.30.450.40, 3 hits
3.30.565.10, 1 hit
InterProiView protein in InterPro
IPR003018 GAF
IPR029016 GAF-like_dom_sf
IPR003594 HATPase_C
IPR036890 HATPase_C_sf
IPR005467 His_kinase_dom
IPR003661 HisK_dim/P
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013654 PAS_2
IPR013767 PAS_fold
IPR016132 Phyto_chromo_attachment
IPR013516 Phyto_chromo_BS
IPR001294 Phytochrome
IPR012129 Phytochrome_A-E
IPR013515 Phytochrome_cen-reg
PfamiView protein in Pfam
PF01590 GAF, 1 hit
PF02518 HATPase_c, 1 hit
PF00512 HisKA, 1 hit
PF00989 PAS, 2 hits
PF08446 PAS_2, 1 hit
PF00360 PHY, 1 hit
PIRSFiPIRSF000084 Phytochrome, 1 hit
PRINTSiPR01033 PHYTOCHROME
SMARTiView protein in SMART
SM00065 GAF, 1 hit
SM00387 HATPase_c, 1 hit
SM00388 HisKA, 1 hit
SM00091 PAS, 2 hits
SUPFAMiSSF55785 SSF55785, 3 hits
SSF55874 SSF55874, 1 hit
TIGRFAMsiTIGR00229 sensory_box, 1 hit
PROSITEiView protein in PROSITE
PS50109 HIS_KIN, 1 hit
PS50112 PAS, 2 hits
PS00245 PHYTOCHROME_1, 1 hit
PS50046 PHYTOCHROME_2, 1 hit

Sequencei

Sequence statusi: Complete.

P42498-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS
60 70 80 90 100
VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
110 120 130 140 150
DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS
160 170 180 190 200
LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
210 220 230 240 250
KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE
260 270 280 290 300
VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
310 320 330 340 350
QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL
360 370 380 390 400
WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
410 420 430 440 450
TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE
460 470 480 490 500
SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
510 520 530 540 550
SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR
560 570 580 590 600
SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
610 620 630 640 650
RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE
660 670 680 690 700
SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
710 720 730 740 750
DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS
760 770 780 790 800
DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
810 820 830 840 850
ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF
860 870 880 890 900
LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
910 920 930 940 950
ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD
960 970 980 990 1000
TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1010 1020 1030 1040 1050
HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE
1060 1070 1080 1090 1100
TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1110
ESRGTEGSSS IK
Length:1,112
Mass (Da):122,516
Last modified:May 3, 2011 - v2
Checksum:i2E06677039213B57
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti498G → E in CAA54075 (PubMed:8049367).Curated1
Sequence conflicti498G → E in CAB53654 (PubMed:10617198).Curated1
Sequence conflicti498G → E in CAB78815 (PubMed:10617198).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X76610 Genomic DNA Translation: CAA54075.1
AL110123 Genomic DNA Translation: CAB53654.1
AL161548 Genomic DNA Translation: CAB78815.1
CP002687 Genomic DNA Translation: AEE84000.1
AK221424 mRNA Translation: BAD94419.1
PIRiS46313
RefSeqiNP_193547.4, NM_117923.8
UniGeneiAt.32943
At.70995

Genome annotation databases

EnsemblPlantsiAT4G18130.1; AT4G18130.1; AT4G18130
GeneIDi827538
GrameneiAT4G18130.1; AT4G18130.1; AT4G18130
KEGGiath:AT4G18130

Similar proteinsi

Entry informationi

Entry nameiPHYE_ARATH
AccessioniPrimary (citable) accession number: P42498
Secondary accession number(s): Q56Y99
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: May 3, 2011
Last modified: April 25, 2018
This is version 161 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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