Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Rubredoxin

Gene

rubA

Organism
Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.1 Publication

Cofactori

Fe3+By similarityNote: Binds 1 Fe3+ ion per subunit.By similarity

Pathwayi: alkane degradation

This protein is involved in the pathway alkane degradation, which is part of Hydrocarbon metabolism.
View all proteins of this organism that are known to be involved in the pathway alkane degradation and in Hydrocarbon metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi6IronPROSITE-ProRule annotation1
Metal bindingi9IronPROSITE-ProRule annotation1
Metal bindingi39IronPROSITE-ProRule annotation1
Metal bindingi42IronPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

  • alkane catabolic process Source: UniProtKB
  • oxidation-reduction process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

UniPathwayiUPA00191.

Names & Taxonomyi

Protein namesi
Recommended name:
Rubredoxin
Short name:
Rdxs
Gene namesi
Name:rubA
Ordered Locus Names:ACIAD1066
OrganismiAcinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Taxonomic identifieri62977 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaeAcinetobacter
Proteomesi
  • UP000000430 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001350211 – 54RubredoxinAdd BLAST54

Expressioni

Inductioni

Constitutively expressed.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi62977.ACIAD1066.

Structurei

3D structure databases

ProteinModelPortaliP42453.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 54Rubredoxin-likePROSITE-ProRule annotationAdd BLAST54

Sequence similaritiesi

Belongs to the rubredoxin family.Curated
Contains 1 rubredoxin-like domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105VCQ. Bacteria.
COG1773. LUCA.
HOGENOMiHOG000223371.
OMAiAPKDMFE.
OrthoDBiPOG091H0FS1.

Family and domain databases

CDDicd00730. rubredoxin. 1 hit.
Gene3Di2.20.28.10. 1 hit.
InterProiIPR024922. Rubredoxin.
IPR024934. Rubredoxin-like_dom.
IPR004039. Rubredoxin-type_fold.
IPR024935. Rubredoxin_dom.
IPR018527. Rubredoxin_Fe_BS.
[Graphical view]
PfamiPF00301. Rubredoxin. 1 hit.
[Graphical view]
PIRSFiPIRSF000071. Rubredoxin. 1 hit.
PRINTSiPR00163. RUBREDOXIN.
PROSITEiPS00202. RUBREDOXIN. 1 hit.
PS50903. RUBREDOXIN_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42453-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKYQCIVCG WIYDEAEGWP QDGIAPGTKW EDIPDDWTCP DCGVSKVDFE

MIEV
Length:54
Mass (Da):6,199
Last modified:November 1, 1995 - v1
Checksum:iDB0584245A2626BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46863 Genomic DNA. Translation: CAA86925.1.
CR543861 Genomic DNA. Translation: CAG67954.1.
PIRiI39520.
RefSeqiWP_004921639.1. NC_005966.1.

Genome annotation databases

EnsemblBacteriaiCAG67954; CAG67954; ACIAD1066.
GeneIDi25682864.
KEGGiaci:ACIAD1066.
PATRICi20739984. VBIAciSp98416_0956.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46863 Genomic DNA. Translation: CAA86925.1.
CR543861 Genomic DNA. Translation: CAG67954.1.
PIRiI39520.
RefSeqiWP_004921639.1. NC_005966.1.

3D structure databases

ProteinModelPortaliP42453.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi62977.ACIAD1066.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAG67954; CAG67954; ACIAD1066.
GeneIDi25682864.
KEGGiaci:ACIAD1066.
PATRICi20739984. VBIAciSp98416_0956.

Phylogenomic databases

eggNOGiENOG4105VCQ. Bacteria.
COG1773. LUCA.
HOGENOMiHOG000223371.
OMAiAPKDMFE.
OrthoDBiPOG091H0FS1.

Enzyme and pathway databases

UniPathwayiUPA00191.

Family and domain databases

CDDicd00730. rubredoxin. 1 hit.
Gene3Di2.20.28.10. 1 hit.
InterProiIPR024922. Rubredoxin.
IPR024934. Rubredoxin-like_dom.
IPR004039. Rubredoxin-type_fold.
IPR024935. Rubredoxin_dom.
IPR018527. Rubredoxin_Fe_BS.
[Graphical view]
PfamiPF00301. Rubredoxin. 1 hit.
[Graphical view]
PIRSFiPIRSF000071. Rubredoxin. 1 hit.
PRINTSiPR00163. RUBREDOXIN.
PROSITEiPS00202. RUBREDOXIN. 1 hit.
PS50903. RUBREDOXIN_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRUBR_ACIAD
AccessioniPrimary (citable) accession number: P42453
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.