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Protein

Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B

Gene

scoB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

Succinyl-CoA + a 3-oxo acid = succinate + a 3-oxoacyl-CoA.PROSITE-ProRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei47PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Transferase

Enzyme and pathway databases

BioCyciBSUB:BSU38980-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B (EC:2.8.3.5)
Alternative name(s):
OXCT B
Succinyl-CoA:3-oxoacid CoA-transferase
Gene namesi
Name:scoB
Synonyms:yxjE
Ordered Locus Names:BSU38980
ORF Names:N15L
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001579201 – 216Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit BAdd BLAST216

Proteomic databases

PaxDbiP42316.
PRIDEiP42316.

Interactioni

Subunit structurei

Heterodimer of a subunit A and a subunit B.By similarity

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021036.

Structurei

Secondary structure

1216
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi2 – 13Combined sources12
Beta strandi21 – 24Combined sources4
Helixi28 – 33Combined sources6
Beta strandi43 – 46Combined sources4
Turni47 – 49Combined sources3
Beta strandi50 – 54Combined sources5
Turni59 – 61Combined sources3
Beta strandi71 – 73Combined sources3
Beta strandi75 – 82Combined sources8
Helixi85 – 93Combined sources9
Beta strandi99 – 102Combined sources4
Beta strandi105 – 108Combined sources4
Helixi129 – 135Combined sources7
Beta strandi136 – 142Combined sources7
Beta strandi152 – 157Combined sources6
Beta strandi163 – 166Combined sources4
Beta strandi169 – 172Combined sources4
Beta strandi174 – 181Combined sources8
Beta strandi184 – 190Combined sources7
Helixi196 – 201Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3CDKX-ray2.59B/D1-216[»]
ProteinModelPortaliP42316.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42316.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108IIH. Bacteria.
COG2057. LUCA.
HOGENOMiHOG000221245.
InParanoidiP42316.
KOiK01029.
OMAiPEGVDVW.
PhylomeDBiP42316.

Family and domain databases

InterProiIPR012791. 3-oxoacid_CoA-transf_B.
IPR004165. CoA_trans_fam_I.
IPR004164. CoA_transf_AS.
[Graphical view]
PANTHERiPTHR13707. PTHR13707. 1 hit.
PfamiPF01144. CoA_trans. 1 hit.
[Graphical view]
SMARTiSM00882. CoA_trans. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02428. pcaJ_scoB_fam. 1 hit.
PROSITEiPS01274. COA_TRANSF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEARKRMVK RAVQEIKDGM NVNLGIGMPT LVANEIPDGV HVMLQSENGL
60 70 80 90 100
LGIGPYPLEG TEDADLINAG KETITEVTGA SYFDSAESFA MIRGGHIDLA
110 120 130 140 150
ILGGMEVSEQ GDLANWMIPG KMVKGMGGAM DLVNGAKRIV VIMEHVNKHG
160 170 180 190 200
ESKVKKTCSL PLTGQKVVHR LITDLAVFDF VNGRMTLTEL QDGVTIEEVY
210
EKTEADFAVS QSVLNS
Length:216
Mass (Da):23,331
Last modified:November 1, 1995 - v1
Checksum:i2D0E402D7A62C0F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83026 Genomic DNA. Translation: BAA11706.1.
AL009126 Genomic DNA. Translation: CAB15924.1.
PIRiC70079.
RefSeqiNP_391777.1. NC_000964.3.
WP_003243049.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15924; CAB15924; BSU38980.
GeneIDi937453.
KEGGibsu:BSU38980.
PATRICi18979846. VBIBacSub10457_4085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83026 Genomic DNA. Translation: BAA11706.1.
AL009126 Genomic DNA. Translation: CAB15924.1.
PIRiC70079.
RefSeqiNP_391777.1. NC_000964.3.
WP_003243049.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3CDKX-ray2.59B/D1-216[»]
ProteinModelPortaliP42316.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021036.

Proteomic databases

PaxDbiP42316.
PRIDEiP42316.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15924; CAB15924; BSU38980.
GeneIDi937453.
KEGGibsu:BSU38980.
PATRICi18979846. VBIBacSub10457_4085.

Phylogenomic databases

eggNOGiENOG4108IIH. Bacteria.
COG2057. LUCA.
HOGENOMiHOG000221245.
InParanoidiP42316.
KOiK01029.
OMAiPEGVDVW.
PhylomeDBiP42316.

Enzyme and pathway databases

BioCyciBSUB:BSU38980-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP42316.

Family and domain databases

InterProiIPR012791. 3-oxoacid_CoA-transf_B.
IPR004165. CoA_trans_fam_I.
IPR004164. CoA_transf_AS.
[Graphical view]
PANTHERiPTHR13707. PTHR13707. 1 hit.
PfamiPF01144. CoA_trans. 1 hit.
[Graphical view]
SMARTiSM00882. CoA_trans. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02428. pcaJ_scoB_fam. 1 hit.
PROSITEiPS01274. COA_TRANSF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSCOB_BACSU
AccessioniPrimary (citable) accession number: P42316
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: October 5, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.