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Protein

Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B

Gene

scoB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

Succinyl-CoA + a 3-oxo acid = succinate + a 3-oxoacyl-CoA.PROSITE-ProRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei47 – 471PROSITE-ProRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Transferase

Enzyme and pathway databases

BioCyciBSUB:BSU38980-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B (EC:2.8.3.5)
Alternative name(s):
OXCT B
Succinyl-CoA:3-oxoacid CoA-transferase
Gene namesi
Name:scoB
Synonyms:yxjE
Ordered Locus Names:BSU38980
ORF Names:N15L
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 216216Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit BPRO_0000157920Add
BLAST

Proteomic databases

PaxDbiP42316.

Interactioni

Subunit structurei

Heterodimer of a subunit A and a subunit B.By similarity

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021036.

Structurei

Secondary structure

1
216
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi2 – 1312Combined sources
Beta strandi21 – 244Combined sources
Helixi28 – 336Combined sources
Beta strandi43 – 464Combined sources
Turni47 – 493Combined sources
Beta strandi50 – 545Combined sources
Turni59 – 613Combined sources
Beta strandi71 – 733Combined sources
Beta strandi75 – 828Combined sources
Helixi85 – 939Combined sources
Beta strandi99 – 1024Combined sources
Beta strandi105 – 1084Combined sources
Helixi129 – 1357Combined sources
Beta strandi136 – 1427Combined sources
Beta strandi152 – 1576Combined sources
Beta strandi163 – 1664Combined sources
Beta strandi169 – 1724Combined sources
Beta strandi174 – 1818Combined sources
Beta strandi184 – 1907Combined sources
Helixi196 – 2016Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3CDKX-ray2.59B/D1-216[»]
ProteinModelPortaliP42316.
SMRiP42316. Positions 1-213.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42316.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108IIH. Bacteria.
COG2057. LUCA.
HOGENOMiHOG000221245.
InParanoidiP42316.
KOiK01029.
OMAiGVGCVKK.
OrthoDBiEOG6HMXJG.
PhylomeDBiP42316.

Family and domain databases

InterProiIPR012791. 3-oxoacid_CoA-transf_B.
IPR004165. CoA_trans_fam_I.
IPR004164. CoA_transf_AS.
[Graphical view]
PANTHERiPTHR13707. PTHR13707. 1 hit.
PfamiPF01144. CoA_trans. 1 hit.
[Graphical view]
SMARTiSM00882. CoA_trans. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02428. pcaJ_scoB_fam. 1 hit.
PROSITEiPS01274. COA_TRANSF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEARKRMVK RAVQEIKDGM NVNLGIGMPT LVANEIPDGV HVMLQSENGL
60 70 80 90 100
LGIGPYPLEG TEDADLINAG KETITEVTGA SYFDSAESFA MIRGGHIDLA
110 120 130 140 150
ILGGMEVSEQ GDLANWMIPG KMVKGMGGAM DLVNGAKRIV VIMEHVNKHG
160 170 180 190 200
ESKVKKTCSL PLTGQKVVHR LITDLAVFDF VNGRMTLTEL QDGVTIEEVY
210
EKTEADFAVS QSVLNS
Length:216
Mass (Da):23,331
Last modified:November 1, 1995 - v1
Checksum:i2D0E402D7A62C0F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83026 Genomic DNA. Translation: BAA11706.1.
AL009126 Genomic DNA. Translation: CAB15924.1.
PIRiC70079.
RefSeqiNP_391777.1. NC_000964.3.
WP_003243049.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15924; CAB15924; BSU38980.
GeneIDi937453.
KEGGibsu:BSU38980.
PATRICi18979846. VBIBacSub10457_4085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83026 Genomic DNA. Translation: BAA11706.1.
AL009126 Genomic DNA. Translation: CAB15924.1.
PIRiC70079.
RefSeqiNP_391777.1. NC_000964.3.
WP_003243049.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3CDKX-ray2.59B/D1-216[»]
ProteinModelPortaliP42316.
SMRiP42316. Positions 1-213.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021036.

Proteomic databases

PaxDbiP42316.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15924; CAB15924; BSU38980.
GeneIDi937453.
KEGGibsu:BSU38980.
PATRICi18979846. VBIBacSub10457_4085.

Phylogenomic databases

eggNOGiENOG4108IIH. Bacteria.
COG2057. LUCA.
HOGENOMiHOG000221245.
InParanoidiP42316.
KOiK01029.
OMAiGVGCVKK.
OrthoDBiEOG6HMXJG.
PhylomeDBiP42316.

Enzyme and pathway databases

BioCyciBSUB:BSU38980-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP42316.

Family and domain databases

InterProiIPR012791. 3-oxoacid_CoA-transf_B.
IPR004165. CoA_trans_fam_I.
IPR004164. CoA_transf_AS.
[Graphical view]
PANTHERiPTHR13707. PTHR13707. 1 hit.
PfamiPF01144. CoA_trans. 1 hit.
[Graphical view]
SMARTiSM00882. CoA_trans. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02428. pcaJ_scoB_fam. 1 hit.
PROSITEiPS01274. COA_TRANSF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing of a 65 kb region of the Bacillus subtilis genome containing the lic and cel loci, and creation of a 177 kb contig covering the gnt-sacXY region."
    Yoshida K., Shindo K., Sano H., Seki S., Fujimura M., Yanai N., Miwa Y., Fujita Y.
    Microbiology 142:3113-3123(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / BGSC1A1.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiSCOB_BACSU
AccessioniPrimary (citable) accession number: P42316
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: February 17, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.