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Protein

Uncharacterized esterase YxiM

Gene

yxiM

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei186NucleophileBy similarity1
Active sitei354By similarity1
Active sitei357By similarity1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciBSUB:BSU39120-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized esterase YxiM (EC:3.1.-.-)
Gene namesi
Name:yxiM
Ordered Locus Names:BSU39120
ORF Names:SS8D
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25Sequence analysisAdd BLAST25
ChainiPRO_000001374426 – 382Uncharacterized esterase YxiMAdd BLAST357

Proteomic databases

PaxDbiP42304.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021116.

Structurei

Secondary structure

1382
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi30 – 38Combined sources9
Beta strandi44 – 47Combined sources4
Turni55 – 57Combined sources3
Beta strandi58 – 62Combined sources5
Helixi64 – 66Combined sources3
Beta strandi67 – 71Combined sources5
Beta strandi73 – 75Combined sources3
Helixi76 – 79Combined sources4
Beta strandi80 – 86Combined sources7
Beta strandi95 – 98Combined sources4
Beta strandi101 – 112Combined sources12
Beta strandi114 – 120Combined sources7
Beta strandi123 – 131Combined sources9
Beta strandi135 – 142Combined sources8
Beta strandi144 – 155Combined sources12
Beta strandi161 – 173Combined sources13
Beta strandi179 – 184Combined sources6
Turni186 – 188Combined sources3
Turni194 – 196Combined sources3
Helixi202 – 205Combined sources4
Helixi206 – 208Combined sources3
Turni212 – 214Combined sources3
Beta strandi216 – 219Combined sources4
Helixi227 – 232Combined sources6
Helixi235 – 240Combined sources6
Beta strandi248 – 252Combined sources5
Helixi256 – 258Combined sources3
Helixi260 – 262Combined sources3
Helixi266 – 281Combined sources16
Turni282 – 284Combined sources3
Beta strandi286 – 290Combined sources5
Helixi313 – 322Combined sources10
Beta strandi326 – 328Combined sources3
Helixi330 – 341Combined sources12
Helixi343 – 347Combined sources5
Beta strandi355 – 359Combined sources5
Helixi360 – 376Combined sources17

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2O14X-ray2.10A17-382[»]
ProteinModelPortaliP42304.
SMRiP42304.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42304.

Family & Domainsi

Sequence similaritiesi

Belongs to the 'GDSL' lipolytic enzyme family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4107TDE. Bacteria.
COG2755. LUCA.
COG3401. LUCA.
HOGENOMiHOG000087899.
InParanoidiP42304.
OMAiLGINDTN.
PhylomeDBiP42304.

Family and domain databases

Gene3Di3.40.50.1110. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR013830. SGNH_hydro.
[Graphical view]
PfamiPF13472. Lipase_GDSL_2. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF52266. SSF52266. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P42304-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKWMAAVFV MMLMLCFGGI ENVKAAEPKV YQFDFGSGSM EPGYIGVRAS
60 70 80 90 100
DRYDRSKGYG FQTPENMRDV AASGAGVKSD AVQFLAYGTK SNNTFNVDLP
110 120 130 140 150
NGLYEVKVTL GNTARASVAA EGVFQVINMT GDGAEDTFQI PVTDGQLNLL
160 170 180 190 200
VTEGKAGTAF TLSALKIKKL SDQPVTNRTI YVGGDSTVCN YYPLNSSKQA
210 220 230 240 250
GWGQMLPHYI DKHTFQVRNM ASGGQIARGF RNDGQLEAIL KYIKPGDYFM
260 270 280 290 300
LQLGINDTNP KHKESEAEFK EVMRDMIRQV KAKGADVILS TPQGRATDFT
310 320 330 340 350
SEGIHSSVNR WYRASILALA EEEKTYLIDL NVLSSAYFTS IGPERTLGLY
360 370 380
MDGDTLHPNR AGADALARLA VQELKRQGIA GF
Length:382
Mass (Da):41,836
Last modified:July 28, 2009 - v2
Checksum:iB46ADC4054B3C97D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti83Q → E in BAA11692 (PubMed:8969509).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83026 Genomic DNA. Translation: BAA11692.1.
AL009126 Genomic DNA. Translation: CAB15948.2.
PIRiA70078.
RefSeqiNP_391791.2. NC_000964.3.
WP_003242617.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15948; CAB15948; BSU39120.
GeneIDi937485.
KEGGibsu:BSU39120.
PATRICi18979886. VBIBacSub10457_4105.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83026 Genomic DNA. Translation: BAA11692.1.
AL009126 Genomic DNA. Translation: CAB15948.2.
PIRiA70078.
RefSeqiNP_391791.2. NC_000964.3.
WP_003242617.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2O14X-ray2.10A17-382[»]
ProteinModelPortaliP42304.
SMRiP42304.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021116.

Proteomic databases

PaxDbiP42304.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15948; CAB15948; BSU39120.
GeneIDi937485.
KEGGibsu:BSU39120.
PATRICi18979886. VBIBacSub10457_4105.

Phylogenomic databases

eggNOGiENOG4107TDE. Bacteria.
COG2755. LUCA.
COG3401. LUCA.
HOGENOMiHOG000087899.
InParanoidiP42304.
OMAiLGINDTN.
PhylomeDBiP42304.

Enzyme and pathway databases

BioCyciBSUB:BSU39120-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP42304.

Family and domain databases

Gene3Di3.40.50.1110. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR013830. SGNH_hydro.
[Graphical view]
PfamiPF13472. Lipase_GDSL_2. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF52266. SSF52266. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYXIM_BACSU
AccessioniPrimary (citable) accession number: P42304
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 28, 2009
Last modified: November 2, 2016
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.