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Reviewed, UniProtKB/Swiss-Prot P42304 (YXIM_BACSU)

Last modified May 5, 2009. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Uncharacterized esterase yxiM
    EC=3.1.-.-
Gene names
Name: yxiM
Ordered Locus Names: BSU39120
ORF Names: SS8D
OrganismBacillus subtilis [Complete proteome] [HAMAP]
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

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Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Sequence similarities

Belongs to the 'GDSL' lipolytic enzyme family.

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Ontologies

Keywords
   DomainSignal
   Molecular functionHydrolase
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological processlipid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionhydrolase activity, acting on ester bonds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 382357Uncharacterized esterase yxiM
PRO_0000013744

Sites

Active site1861 By similarity
Active site3521 By similarity
Active site3571 By similarity

Secondary structure

1 .................................................................... 382
Helix Strand Turn

Details...

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Sequences

Sequence LengthMass (Da)Tools
P42304-1 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: 86B1BE9011F6D962

FASTA38241,836
        10         20         30         40         50         60 
MKKWMAAVFV MMLMLCFGGI ENVKAAEPKV YQFDFGSGSM EPGYIGVRAS DRYDRSKGYG 

        70         80         90        100        110        120 
FQTPENMRDV AASGAGVKSD AVEFLAYGTK SNNTFNVDLP NGLYEVKVTL GNTARASVAA 

       130        140        150        160        170        180 
EGVFQVINMT GDGAEDTFQI PVTDGQLNLL VTEGKAGTAF TLSALKIKKL SDQPVTNRTI 

       190        200        210        220        230        240 
YVGGDSTVCN YYPLNSSKQA GWGQMLPHYI DKHTFQVRNM ASGGQIARGF RNDGQLEAIL 

       250        260        270        280        290        300 
KYIKPGDYFM LQLGINDTNP KHKESEAEFK EVMRDMIRQV KAKGADVILS TPQGRATDFT 

       310        320        330        340        350        360 
SEGIHSSVNR WYRASILALA EEEKTYLIDL NVLSSAYFTS IGPERTLGLY MDGDTLHPNR 

       370        380 
AGADALARLA VQELKRQGIA GF

« Hide

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References

« Hide 'large scale' references
[1]"Sequencing of a 65 kb region of the Bacillus subtilis genome containing the lic and cel loci, and creation of a 177 kb contig covering the gnt-sacXY region."
Yoshida K., Shindo K., Sano H., Seki S., Fujimura M., Yanai N., Miwa Y., Fujita Y.
Microbiology 142:3113-3123(1996) [PubMed: 8969509] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / BGSC1A1.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"X-ray structure of the hypothetical protein YXIM_BACSU from Bacillus subtilis."
Northeast structural genomics consortium (NESG)
Submitted (DEC-2006) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 17-382.

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Cross-references

Sequence databases

D83026 Genomic DNA. Translation: BAA11692.1.
Z99124 Genomic DNA. Translation: CAB15948.1.
PIRA70078.
RefSeqNP_391791.1.

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
2O14X-ray2.10A17-382[»]
ModBaseSearch...

Genome annotation databases

GeneID937485.
GenomeReviewsGene locus BSU39120 in contig AL009126_GR.
KEGGbsu:BSU39120.
NMPDRfig|224308.1.peg.3917.

Organism-specific databases

SubtiListBG11142. yxiM. [Micado]
CMRSearch...

Phylogenomic databases

HOGENOMP42304.
OMAP42304. LENCTAS.

Enzyme and pathway databases

BioCycBSUB224308:BSU3908-MON.

Family and domain databases

InterProIPR013831. Esterase_SGNH_hydro-type_subgr.
IPR001087. Lipase_GDSL.
IPR008265. Lipase_GDSL_AS.
[Graphical view]
Gene3DG3DSA:3.40.50.1110. Esterase_SGNH_hydro-type_subgr. 1 hit.
PfamPF00657. Lipase_GDSL. 1 hit.
[Graphical view]
PROSITEPS01098. LIPASE_GDSL_SER. False negative.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameYXIM_BACSU
AccessionPrimary (citable) accession number: P42304
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: May 5, 2009
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents