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P42304 (YXIM_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Uncharacterized esterase yxiM
EC=3.1.-.-
Gene names
Name:yxiM
Ordered Locus Names:BSU39120
ORF Names:SS8D
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the 'GDSL' lipolytic enzyme family.

Ontologies

Keywords
   DomainSignal
   Molecular functionHydrolase
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological processlipid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionhydrolase activity, acting on ester bonds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 382357Uncharacterized esterase yxiM
PRO_0000013744

Sites

Active site1861Nucleophile By similarity
Active site3541 By similarity
Active site3571 By similarity

Experimental info

Sequence conflict831Q → E in BAA11692. Ref.1

Secondary structure

1 .................................................................... 382
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P42304 [UniParc].

Last modified July 28, 2009. Version 2.
Checksum: B46ADC4054B3C97D

FASTA38241,836
        10         20         30         40         50         60 
MKKWMAAVFV MMLMLCFGGI ENVKAAEPKV YQFDFGSGSM EPGYIGVRAS DRYDRSKGYG 

        70         80         90        100        110        120 
FQTPENMRDV AASGAGVKSD AVQFLAYGTK SNNTFNVDLP NGLYEVKVTL GNTARASVAA 

       130        140        150        160        170        180 
EGVFQVINMT GDGAEDTFQI PVTDGQLNLL VTEGKAGTAF TLSALKIKKL SDQPVTNRTI 

       190        200        210        220        230        240 
YVGGDSTVCN YYPLNSSKQA GWGQMLPHYI DKHTFQVRNM ASGGQIARGF RNDGQLEAIL 

       250        260        270        280        290        300 
KYIKPGDYFM LQLGINDTNP KHKESEAEFK EVMRDMIRQV KAKGADVILS TPQGRATDFT 

       310        320        330        340        350        360 
SEGIHSSVNR WYRASILALA EEEKTYLIDL NVLSSAYFTS IGPERTLGLY MDGDTLHPNR 

       370        380 
AGADALARLA VQELKRQGIA GF

« Hide

References

« Hide 'large scale' references
[1]"Sequencing of a 65 kb region of the Bacillus subtilis genome containing the lic and cel loci, and creation of a 177 kb contig covering the gnt-sacXY region."
Yoshida K., Shindo K., Sano H., Seki S., Fujimura M., Yanai N., Miwa Y., Fujita Y.
Microbiology 142:3113-3123(1996) [PubMed: 8969509] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / BGSC1A1.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
Microbiology 155:1758-1775(2009) [PubMed: 19383706] [Abstract]
Cited for: SEQUENCE REVISION TO 83.
[4]"X-ray structure of the hypothetical protein YXIM_BACSU from Bacillus subtilis."
Northeast structural genomics consortium (NESG)
Submitted (DEC-2006) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 17-382.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		D83026 Genomic DNA. Translation: BAA11692.1.
AL009126 Genomic DNA. Translation: CAB15948.2.
PIRA70078.
RefSeqNP_391791.2. NC_000964.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2O14X-ray2.10A17-382[»]
ProteinModelPortalP42304.
SMRP42304. Positions 29-382.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000003391; EBBACP00000003391; EBBACG00000003384.
GeneID937485.
GenomeReviewsGene locus BSU39120 in contig AL009126_GR.
KEGGbsu:BSU39120.
NMPDRfig|224308.1.peg.3917.
PATRIC18979886. VBIBacSub10457_4105.

Organism-specific databases

GenoListBSU39120.

Phylogenomic databases

GeneTreeEBGT00050000006183.
HOGENOMHBG322748.
PhylomeDBP42304.
ProtClustDBCLSK626751.

Enzyme and pathway databases

BioCycBSUB:BSU39120-MONOMER.

Family and domain databases

InterProIPR013830. Esterase_SGNH_hydro-type.
IPR013831. Esterase_SGNH_hydro-type_subgr.
IPR001087. Lipase_GDSL.
[Graphical view]
Gene3DG3DSA:3.40.50.1110. Esterase_SGNH_hydro-type_subgr. 1 hit.
PfamPF00657. Lipase_GDSL. 1 hit.
[Graphical view]
SUPFAMSSF52266. Esterase_SGNH_hydro-type. 1 hit.
PROSITEPS01098. LIPASE_GDSL_SER. False negative.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYXIM_BACSU
AccessionPrimary (citable) accession number: P42304
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 28, 2009
Last modified: January 25, 2012
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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