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P42293 (YXIA_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein yxiA
Gene names
Name:yxiA
Synonyms:J3A
Ordered Locus Names:BSU39330
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length469 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 43 family.

Ontologies

Keywords
   DomainSignal
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionhydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential
Chain27 – 469443Uncharacterized protein yxiA
PRO_0000012205

Experimental info

Sequence conflict1751F → S in BAA06646. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P42293 [UniParc].

Last modified July 28, 2009. Version 2.
Checksum: 1AB8F3D8EF2B3E2E

FASTA46952,607
        10         20         30         40         50         60 
MFNRLFRVCF LAALIMAFTL PNSVYAQKPI FKEVSVHDPS IIETNGTFYV FGSHLASAKS 

        70         80         90        100        110        120 
NDLMQWQQLT TSVSNDNPLI PNVYEELKET FEWAQSDTLW AADVTQLADG KYYMYYNACR 

       130        140        150        160        170        180 
GDSPRSAMGV AVADNIEGPY KNKGIFLKSG MEGTSSDGTP YDATKHPNVV DPHTFFDKDG 

       190        200        210        220        230        240 
KLWMVYGSYS GGIFILEMNP KTGFPLPGQG YGKKLLGGNH SRIEGPYVLY NPDTQYYYLY 

       250        260        270        280        290        300 
LSYGGLDATG GYNIRVARSK KPDGPYYDAE GNPMLDVRGK GGTFFDDRSI EPYGVKLMGS 

       310        320        330        340        350        360 
YTFETENEKG TGYVSPGHNS AYYDEKTGRS YLIFHTRFPG RGEEHEVRVH QLFMNKDGWP 

       370        380        390        400        410        420 
VAAPYRYAGE TLKEVKQKDI TGTYKLIQHG KDISADIKQT INIQLNKNHT ISGEMTGTWR 

       430        440        450        460 
KTGKNTADIT LAGKKYNGVF LRQWDSVREK NVMTFSVLNT SGEAVWGSK

« Hide

References

« Hide 'large scale' references
[1]"Cloning and sequencing of a 29 kb region of the Bacillus subtilis genome containing the hut and wapA loci."
Yoshida K., Sano H., Seki S., Oda M., Fujimura M., Fujita Y.
Microbiology 141:337-343(1995) [PubMed: 7704263] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / BGSC1A1.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
Microbiology 155:1758-1775(2009) [PubMed: 19383706] [Abstract]
Cited for: SEQUENCE REVISION TO 175.
[4]"Cloning and nucleotide sequences of histidase and regulatory genes in the Bacillus subtilis hut operon and positive regulation of the operon."
Oda M., Sugishita A., Furukawa K.
J. Bacteriol. 170:3199-3205(1988) [PubMed: 2454913] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-171.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		D31856 Genomic DNA. Translation: BAA06646.1.
AL009126 Genomic DNA. Translation: CAB15969.2.
M20659 Genomic DNA. No translation available.
PIRE70076.
RefSeqNP_391812.2. NC_000964.3.

3D structure databases

ProteinModelPortalP42293.
SMRP42293. Positions 28-469.
ModBaseSearch...

Protein family/group databases

CAZyGH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000003765; EBBACP00000003765; EBBACG00000003757.
GeneID937533.
GenomeReviewsGene locus BSU39330 in contig AL009126_GR.
KEGGbsu:BSU39330.
NMPDRfig|224308.1.peg.3938.
PATRIC18979926. VBIBacSub10457_4125.

Organism-specific databases

GenoListBSU39330.

Phylogenomic databases

GeneTreeEBGT00050000001042.
HOGENOMHBG338482.
PhylomeDBP42293.
ProtClustDBCLSK888149.

Enzyme and pathway databases

BioCycBSUB:BSU39330-MONOMER.

Family and domain databases

InterProIPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]
Gene3DG3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHERPTHR22925. Glyco_hydro_43. 1 hit.
PfamPF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
SUPFAMSSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNetSearch...

Entry information

Entry nameYXIA_BACSU
AccessionPrimary (citable) accession number: P42293
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 28, 2009
Last modified: January 25, 2012
This is version 72 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

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