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P42197 (BACS2_HALVA) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Sensory rhodopsin-2
Alternative name(s):
Sensory rhodopsin II
Short name=SR-II
Gene names
Name:sop2
Synonyms:sopII
OrganismHaloarcula vallismortis (Halobacterium vallismortis)
Taxonomic identifier28442 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Halobacteria › Halobacteriales › Halobacteriaceae › Haloarcula

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Involved in the control of phototaxis. Seems to activate a methyl-accepting protein (HTR-II). Photoreceptor for blue light.

Subcellular location

Cell membrane; Multi-pass membrane protein.

Sequence similarities

Belongs to the archaeal/bacterial/fungal opsin family.

Ontologies

Keywords
   Biological processSensory transduction
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   LigandChromophore
   Molecular functionPhotoreceptor protein
Receptor
Retinal protein
Gene Ontology (GO)
   Biological_processphototransduction

Inferred from electronic annotation. Source: UniProtKB-KW

protein-chromophore linkage

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionion channel activity

Inferred from electronic annotation. Source: InterPro

photoreceptor activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 236236Sensory rhodopsin-2
PRO_0000196281

Regions

Topological domain1 – 33Extracellular By similarity
Transmembrane4 – 2522Helical; Name=Helix A; By similarity
Topological domain26 – 338Cytoplasmic By similarity
Transmembrane34 – 5522Helical; Name=Helix B; By similarity
Topological domain56 – 6914Extracellular By similarity
Transmembrane70 – 9122Helical; Name=Helix C; By similarity
Topological domain92 – 943Cytoplasmic By similarity
Transmembrane95 – 11723Helical; Name=Helix D; By similarity
Topological domain118 – 1214Extracellular By similarity
Transmembrane122 – 14928Helical; Name=Helix E; By similarity
Topological domain150 – 1534Cytoplasmic By similarity
Transmembrane154 – 18229Helical; Name=Helix F; By similarity
Topological domain183 – 1908Extracellular By similarity
Transmembrane191 – 23646Helical; Name=Helix G; By similarity

Amino acid modifications

Modified residue2061N6-(retinylidene)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
P42197 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: DCB6DC5713C150E1

FASTA23625,053
        10         20         30         40         50         60 
MATITTWFTL GLLGELLGTA VLAYGYTLVP EETRKRYLLL IAIPGIAIVA YALMALGFGS 

        70         80         90        100        110        120 
IQSEGHAVYV VRYVDWLLTT PLNVWFLALL AGASREDTVK LVVLQALTIV FGFAGAVTPS 

       130        140        150        160        170        180 
PVSYALFAVG GALFGGVIYL LYRNIAVAAK STLSDIEVSL YRTLRNFVVV LWLVYPVVWL 

       190        200        210        220        230 
LGAAGVGLMD VETATLVVVY LDVVTKVGFG VIALLAMIDL GSAGETAEEP TAVAGD

« Hide

References

[1]"The primary structure of sensory rhodopsin II: a member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II."
Seidel R., Scharf B., Gautel M., Kleine K., Oesterhelt D., Engelhard M.
Proc. Natl. Acad. Sci. U.S.A. 92:3036-3040(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 29715 / DSM 3756 / JCM 8877 / NBRC 14741 / NCIMB 2082.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		Z35308 Genomic DNA. Translation: CAA84550.1.
PIRS55297.

3D structure databases

ProteinModelPortalP42197.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR001425. Rhodopsin_arc/bac/fun.
IPR018229. Rhodopsin_retinal_BS.
[Graphical view]
PfamPF01036. Bac_rhodopsin. 1 hit.
[Graphical view]
PRINTSPR00251. BACTRLOPSIN.
SMARTSM01021. Bac_rhodopsin. 1 hit.
[Graphical view]
PROSITEPS00950. BACTERIAL_OPSIN_1. 1 hit.
PS00327. BACTERIAL_OPSIN_RET. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameBACS2_HALVA
AccessionPrimary (citable) accession number: P42197
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: April 3, 2013
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

7-transmembrane G-linked receptors

List of 7-transmembrane G-linked receptor entries

SIMILARITY comments

Index of protein domains and families

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