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P42064 (APPD_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 100. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Oligopeptide transport ATP-binding protein AppD
Gene names
Name:appD
Ordered Locus Names:BSU11360
OrganismBacillus subtilis (strain 168) [Reference proteome] [HAMAP]
Taxonomic identifier224308 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus ›

Protein attributes

Sequence length328 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transporting tripeptides. Probably responsible for energy coupling to the transport system.

Subcellular location

Cell membrane; Peripheral membrane protein.

Sequence similarities

Belongs to the ABC transporter superfamily.

Contains 1 ABC transporter domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 328328Oligopeptide transport ATP-binding protein AppD
PRO_0000091931

Regions

Domain5 – 256252ABC transporter
Nucleotide binding41 – 488ATP Potential

Sequences

Sequence LengthMass (Da)Tools
P42064 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: E4B87CD2B9D27F25

FASTA32836,311
        10         20         30         40         50         60 
MSTLLEVNNL KTYFFRKKEP IPAVDGVDFH ISKGETVALV GESGSGKSIT SLSIMGLVQS 

        70         80         90        100        110        120 
SGGKIMDGSI KLEDKDLTSF TENDYCKIRG NEVSMIFQEP MTSLNPVLTI GEQITEVLIY 

       130        140        150        160        170        180 
HKNMKKKEAR QRAVELLQMV GFSRAEQIMK EYPHRLSGGM RQRVMIAIAL SCNPKLLIAD 

       190        200        210        220        230        240 
EPTTALDVTI QAQVLELMKD LCQKFNTSIL LITHDLGVVS EAADRVIVMY CGQVVENATV 

       250        260        270        280        290        300 
DDLFLEPLHP YTEGLLTSIP VIDGEIDKLN AIKGSVPTPD NLPPGCRFAP RCPKAMDKCW 

       310        320 
TNQPSLLTHK SGRTVRCFLY EEEGAEQS

« Hide

References

« Hide 'large scale' references
[1]"Identification of a second oligopeptide transport system in Bacillus subtilis and determination of its role in sporulation."
Koide A., Hoch J.A.
Mol. Microbiol. 13:417-426(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U20909 Genomic DNA. Translation: AAA62356.1.
AL009126 Genomic DNA. Translation: CAB12993.1.
PIRI40543.
RefSeqNP_389018.1. NC_000964.3.

3D structure databases

ProteinModelPortalP42064.
SMRP42064. Positions 1-299.
ModBaseSearch...

Protein-protein interaction databases

STRING224308.BSU11360.

Protein family/group databases

TCDB3.A.1.5.20. ATP-binding cassette (ABC) superfamily.

Proteomic databases

PaxDbP42064.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB12993; CAB12993; BSU11360.
GeneID936391.
KEGGbsu:BSU11360.
PATRIC18973984. VBIBacSub10457_1186.

Organism-specific databases

GenoListBSU11360. [Micado]

Phylogenomic databases

eggNOGCOG0444.
KOK02031.
OMALKTYFFR.
ProtClustDBCLSK887055.

Enzyme and pathway databases

BioCycBSUB:BSU11360-MONOMER.

Family and domain databases

InterProIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR01727. oligo_HPY. 1 hit.
PROSITEPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameAPPD_BACSU
AccessionPrimary (citable) accession number: P42064
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: May 29, 2013
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents