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P41582

- 6PGD_CITKO

UniProt

P41582 - 6PGD_CITKO

Protein

6-phosphogluconate dehydrogenase, decarboxylating

Gene

gnd

Organism
Citrobacter koseri (Citrobacter diversus)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 1 (01 Nov 1995)
      Previous versions | rss
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    Functioni

    Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO2, with concomitant reduction of NADP to NADPH.By similarity

    Catalytic activityi

    6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei91 – 911NADPBy similarity
    Binding sitei91 – 911SubstrateBy similarity
    Active sitei172 – 1721Proton acceptorBy similarity
    Active sitei179 – 1791Proton donorBy similarity
    Binding sitei180 – 1801SubstrateBy similarity
    Binding sitei249 – 2491Substrate; via amide nitrogenBy similarity
    Binding sitei276 – 2761SubstrateBy similarity
    Binding sitei434 – 4341Substrate; shared with dimeric partnerBy similarity
    Binding sitei440 – 4401Substrate; shared with dimeric partnerBy similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi1 – 44NADPBy similarity
    Nucleotide bindingi22 – 243NADPBy similarity
    Nucleotide bindingi63 – 653NADPBy similarity

    GO - Molecular functioni

    1. NADP binding Source: InterPro
    2. phosphogluconate dehydrogenase (decarboxylating) activity Source: UniProtKB

    GO - Biological processi

    1. D-gluconate metabolic process Source: UniProtKB-KW
    2. pentose-phosphate shunt Source: UniProtKB

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Gluconate utilization, Pentose shunt

    Keywords - Ligandi

    NADP

    Enzyme and pathway databases

    UniPathwayiUPA00115; UER00410.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    6-phosphogluconate dehydrogenase, decarboxylating (EC:1.1.1.44)
    Gene namesi
    Name:gnd
    OrganismiCitrobacter koseri (Citrobacter diversus)
    Taxonomic identifieri545 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini‹1 – ›445›4456-phosphogluconate dehydrogenase, decarboxylatingPRO_0000090035Add
    BLAST

    Proteomic databases

    PRIDEiP41582.

    Interactioni

    Subunit structurei

    Homodimer.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliP41582.
    SMRiP41582. Positions 1-445.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni117 – 1193Substrate bindingBy similarity
    Regioni175 – 1762Substrate bindingBy similarity

    Sequence similaritiesi

    Family and domain databases

    Gene3Di1.10.1040.10. 1 hit.
    1.20.5.320. 1 hit.
    3.40.50.720. 1 hit.
    InterProiIPR008927. 6-PGluconate_DH_C-like.
    IPR006114. 6PGDH_C.
    IPR006113. 6PGDH_decarbox.
    IPR006115. 6PGDH_NADP-bd.
    IPR006184. 6PGdom_BS.
    IPR013328. DH_multihelical.
    IPR012284. Fibritin/6PGD_C-extension.
    IPR016040. NAD(P)-bd_dom.
    [Graphical view]
    PfamiPF00393. 6PGD. 1 hit.
    PF03446. NAD_binding_2. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000109. 6PGD. 1 hit.
    SUPFAMiSSF48179. SSF48179. 1 hit.
    TIGRFAMsiTIGR00873. gnd. 1 hit.
    PROSITEiPS00461. 6PGD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    P41582-1 [UniParc]FASTAAdd to Basket

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    AVMGRNLALN IESRGYTVSV FNRSREKTEE VIAENPGKKL VPYYTVKEFV    50
    ESLETPRRIL LMVKAGAGTD AAIDSLKPYL DKGDIIIDGG NTFFQDTIRR 100
    NRELSAEGFN FIGTGVSGGE EGALKGPSIM PGGQKEAYEL VAPILTKIAA 150
    VAEDGEPCVT YIGADGAGHY VKMVHNGIEY GDMQLIAEAY SLLKGGLNLS 200
    NEELAETFTE WNKGELNSYL IDITKDIFTK KDEEGKYLVD VILDEAANKG 250
    TGKWTSQSSL DLGEPLSLIT ESVFARYISS LKEQRVAASK VLSGPKAQLA 300
    GDKAEFIEKV RRALYLGKIV SYAQGFSQLR AASDEYNWDL NYGEIAKIFR 350
    AGCIIRAQFL QKITDAYAEN AGIANLLLAP YFKKIADDYQ QALRDVVAYA 400
    VQNGIPVPTF SAAVAYYDSY RAAVLPANLI QAQRDYFGAH TYKRT 445
    Length:445
    Mass (Da):48,829
    Last modified:November 1, 1995 - v1
    Checksum:i9DB96925EC40EDC4
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11
    Non-terminal residuei445 – 4451

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti31 – 311V → G in strain: CT45.
    Natural varianti206 – 2061E → D in strain: CT42.
    Natural varianti300 – 3001A → E in strain: CT27.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U14424 Genomic DNA. Translation: AAC43774.1.
    U14425 Genomic DNA. Translation: AAC43775.1.
    U14427 Genomic DNA. Translation: AAC43776.1.
    U14428 Genomic DNA. Translation: AAC43777.1.
    U14429 Genomic DNA. Translation: AAC43778.1.
    U14432 Genomic DNA. Translation: AAC43779.1.
    PIRiI40681.
    I40682.
    I40684.
    I40685.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U14424 Genomic DNA. Translation: AAC43774.1 .
    U14425 Genomic DNA. Translation: AAC43775.1 .
    U14427 Genomic DNA. Translation: AAC43776.1 .
    U14428 Genomic DNA. Translation: AAC43777.1 .
    U14429 Genomic DNA. Translation: AAC43778.1 .
    U14432 Genomic DNA. Translation: AAC43779.1 .
    PIRi I40681.
    I40682.
    I40684.
    I40685.

    3D structure databases

    ProteinModelPortali P41582.
    SMRi P41582. Positions 1-445.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi P41582.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Enzyme and pathway databases

    UniPathwayi UPA00115 ; UER00410 .

    Family and domain databases

    Gene3Di 1.10.1040.10. 1 hit.
    1.20.5.320. 1 hit.
    3.40.50.720. 1 hit.
    InterProi IPR008927. 6-PGluconate_DH_C-like.
    IPR006114. 6PGDH_C.
    IPR006113. 6PGDH_decarbox.
    IPR006115. 6PGDH_NADP-bd.
    IPR006184. 6PGdom_BS.
    IPR013328. DH_multihelical.
    IPR012284. Fibritin/6PGD_C-extension.
    IPR016040. NAD(P)-bd_dom.
    [Graphical view ]
    Pfami PF00393. 6PGD. 1 hit.
    PF03446. NAD_binding_2. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000109. 6PGD. 1 hit.
    SUPFAMi SSF48179. SSF48179. 1 hit.
    TIGRFAMsi TIGR00873. gnd. 1 hit.
    PROSITEi PS00461. 6PGD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria."
      Nelson K., Selander R.K.
      Proc. Natl. Acad. Sci. U.S.A. 91:10227-10231(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: CT19, CT27, CT4, CT42, CT45 and CT9.

    Entry informationi

    Entry namei6PGD_CITKO
    AccessioniPrimary (citable) accession number: P41582
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1995
    Last modified: October 1, 2014
    This is version 79 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3