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P41568

- SUI11_ARATH

UniProt

P41568 - SUI11_ARATH

Protein

Protein translation factor SUI1 homolog 1

Gene

At4g27130

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Probably involved in translation.

    GO - Molecular functioni

    1. translation initiation factor activity Source: InterPro

    GO - Biological processi

    1. regulation of translation Source: UniProtKB-KW

    Keywords - Biological processi

    Protein biosynthesis, Translation regulation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein translation factor SUI1 homolog 1
    Gene namesi
    Ordered Locus Names:At4g27130
    ORF Names:F20D21.11, T24A18.80
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 4

    Organism-specific databases

    TAIRiAT4G27130.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 113112Protein translation factor SUI1 homolog 1PRO_0000130567Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei2 – 21N-acetylserine1 Publication

    Keywords - PTMi

    Acetylation

    Proteomic databases

    PRIDEiP41568.

    Expressioni

    Gene expression databases

    GenevestigatoriP41568.

    Interactioni

    Protein-protein interaction databases

    BioGridi14108. 3 interactions.
    IntActiP41568. 2 interactions.
    STRINGi3702.AT4G27130.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliP41568.
    SMRiP41568. Positions 29-113.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SUI1 family.Curated

    Phylogenomic databases

    eggNOGiCOG0023.
    HOGENOMiHOG000279813.
    InParanoidiP41568.
    KOiK03113.
    OMAiANDQSED.
    PhylomeDBiP41568.

    Family and domain databases

    Gene3Di3.30.780.10. 1 hit.
    InterProiIPR005874. SUI1_euk.
    IPR001950. TIF_SUI1.
    [Graphical view]
    PfamiPF01253. SUI1. 1 hit.
    [Graphical view]
    PIRSFiPIRSF004499. SUI1_euk. 1 hit.
    SUPFAMiSSF55159. SSF55159. 1 hit.
    TIGRFAMsiTIGR01160. SUI1_MOF2. 1 hit.
    PROSITEiPS50296. SUI1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P41568-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL    50
    KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA 100
    GLVKKDNIKI HGF 113
    Length:113
    Mass (Da):12,592
    Last modified:November 1, 1997 - v2
    Checksum:iC2A4B16864DFFBF0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U81042 Genomic DNA. Translation: AAB68033.1.
    AL035680 Genomic DNA. Translation: CAB38843.1.
    AL161566 Genomic DNA. Translation: CAB79568.1.
    CP002687 Genomic DNA. Translation: AEE85305.1.
    AY037234 mRNA. Translation: AAK59834.1.
    AY060537 mRNA. Translation: AAL31168.1.
    AY088288 mRNA. Translation: AAM65827.1.
    PIRiT06043.
    RefSeqiNP_194443.1. NM_118847.3.
    UniGeneiAt.2857.

    Genome annotation databases

    EnsemblPlantsiAT4G27130.1; AT4G27130.1; AT4G27130.
    GeneIDi828821.
    KEGGiath:AT4G27130.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U81042 Genomic DNA. Translation: AAB68033.1 .
    AL035680 Genomic DNA. Translation: CAB38843.1 .
    AL161566 Genomic DNA. Translation: CAB79568.1 .
    CP002687 Genomic DNA. Translation: AEE85305.1 .
    AY037234 mRNA. Translation: AAK59834.1 .
    AY060537 mRNA. Translation: AAL31168.1 .
    AY088288 mRNA. Translation: AAM65827.1 .
    PIRi T06043.
    RefSeqi NP_194443.1. NM_118847.3.
    UniGenei At.2857.

    3D structure databases

    ProteinModelPortali P41568.
    SMRi P41568. Positions 29-113.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 14108. 3 interactions.
    IntActi P41568. 2 interactions.
    STRINGi 3702.AT4G27130.1-P.

    Proteomic databases

    PRIDEi P41568.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT4G27130.1 ; AT4G27130.1 ; AT4G27130 .
    GeneIDi 828821.
    KEGGi ath:AT4G27130.

    Organism-specific databases

    TAIRi AT4G27130.

    Phylogenomic databases

    eggNOGi COG0023.
    HOGENOMi HOG000279813.
    InParanoidi P41568.
    KOi K03113.
    OMAi ANDQSED.
    PhylomeDBi P41568.

    Gene expression databases

    Genevestigatori P41568.

    Family and domain databases

    Gene3Di 3.30.780.10. 1 hit.
    InterProi IPR005874. SUI1_euk.
    IPR001950. TIF_SUI1.
    [Graphical view ]
    Pfami PF01253. SUI1. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF004499. SUI1_euk. 1 hit.
    SUPFAMi SSF55159. SSF55159. 1 hit.
    TIGRFAMsi TIGR01160. SUI1_MOF2. 1 hit.
    PROSITEi PS50296. SUI1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning and sequence analysis of a genomic clone of Arabidopsis encoding a putative translation initiation factor."
      Ma H., Stack S., Odell J.T.
      Plant Gene Register PGR97-022
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
      Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
      , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
      Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    6. "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
      Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T., Giglione C.
      Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiSUI11_ARATH
    AccessioniPrimary (citable) accession number: P41568
    Secondary accession number(s): Q9SLK5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 94 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Translation initiation factors
      List of translation initiation factor entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3