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P41212 (ETV6_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 130. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (5) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Transcription factor ETV6
Alternative name(s):
ETS translocation variant 6
ETS-related protein Tel1
Short name=Tel
Gene names
Name:ETV6
Synonyms:TEL, TEL1
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length452 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Transcriptional repressor; binds to the DNA sequence 5'-CCGGAAGT-3'.

Subunit structure

Can form homodimers or heterodimers with TEL2 or FLI1. Interacts with L3MBTL1 and HDAC9. Ref.14 Ref.15

Subcellular location

Nucleus.

Tissue specificity

Ubiquitous.

Post-translational modification

Phosphorylation of Ser-257 by MAPK14 (p38) inhibits ETV6 transcriptional repression.

Involvement in disease

Note=A chromosomal aberration involving ETV6 is found in a form of chronic myelomonocytic leukemia (CMML). Translocation t(5;12)(q33;p13) with PDGFRB. It is characterized by abnormal clonal myeloid proliferation and by progression to acute myelogenous leukemia (AML). Ref.12

Note=Chromosomal aberrations involving ETV6 are found in a form of acute myeloid leukemia (AML). Translocation t(12;22)(p13;q11) with MN1; translocation t(4;12)(q12;p13) with CHIC2. Ref.7 Ref.8 Ref.16

Note=Chromosomal aberrations involving ETV6 are found in childhood acute lymphoblastic leukemia (ALL). Translocations t(12;21)(p12;q22) and t(12;21)(p13;q22) with RUNX1/AML1.

Note=A chromosomal aberration involving ETV6 is found in a form of pre-B acute myeloid leukemia. Translocation t(9;12)(p24;p13) with JAK2.

Note=A chromosomal aberration involving ETV6 is found in myelodysplastic syndrome (MDS) with basophilia. Translocation t(5;12)(q31;p13) with ACSL6.

Note=A chromosomal aberration involving ETV6 is found in acute eosinophilic leukemia (AEL). Translocation t(5;12)(q31;p13) with ACSL6.

Note=A chromosomal aberration involving ETV6 is found in myelodysplastic syndrome (MDS). Translocation t(1;12)(p36.1;p13) with MDS2.

Defects in ETV6 are a cause of myeloproliferative disorder chronic with eosinophilia (MPE) [MIM:131440]. A hematologic disorder characterized by malignant eosinophils proliferation. Note=A chromosomal aberration involving ETV6 is found in many instances of myeloproliferative disorder chronic with eosinophilia. Translocation t(5;12) with PDGFRB on chromosome 5 creating an ETV6-PDGFRB fusion protein.

Defects in ETV6 are a cause of acute myelogenous leukemia (AML) [MIM:601626]. AML is a malignant disease in which hematopoietic precursors are arrested in an early stage of development. Ref.7 Ref.8 Ref.16

Note=A chromosomal aberration involving ETV6 is found in acute lymphoblastic leukemia. Translocation t(9;12)(p13;p13) with PAX5.

Sequence similarities

Belongs to the ETS family.

Contains 1 ETS DNA-binding domain.

Contains 1 PNT (pointed) domain.

Sequence caution

The sequence ABI30005.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Ontologies

Binary interactions

With

Entry

#Exp.

IntAct

Notes

HDAC9Q9UKV0-33EBI-1372759,EBI-765476

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 452452Transcription factor ETV6
PRO_0000204121

Regions

Domain40 – 12485PNT
DNA binding339 – 42082ETS

Sites

Site11 – 122Breakpoint for translocation to form CHIC2-ETV6 in AML
Site54 – 552Breakpoint for translocation to form ETV6-MDS2 in MDS
Site55 – 562Breakpoint for translocation to form PAX5-ETV6
Site336 – 3372Breakpoint for translocation to form ETV6-AML1 in ALL

Amino acid modifications

Modified residue111N6-acetyllysine Ref.20
Modified residue161Phosphoserine Ref.18 Ref.19
Modified residue181Phosphothreonine Ref.17 Ref.19
Modified residue221Phosphoserine Ref.11 Ref.17 Ref.18 Ref.19
Modified residue2131Phosphoserine Ref.18
Modified residue2571Phosphoserine; by MAPK14 Ref.11
Modified residue3021N6-acetyllysine Ref.20

Natural variations

Natural variant3441Y → YG in one individual with AML; somatic mutation; unable to repress transcription. Ref.16
VAR_034600

Experimental info

Mutagenesis221S → A: No effect.
Mutagenesis2131S → A: No effect. Ref.11
Mutagenesis2381S → A: No effect. Ref.11
Mutagenesis2571S → A: No phosphorylation by MAPK14. Ref.11

Secondary structure

....................................... 452
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P41212 [UniParc].

Last modified February 1, 1995. Version 1.
Checksum: DEC45682ECADECBB

FASTA45253,000
        10         20         30         40         50         60 
MSETPAQCSI KQERISYTPP ESPVPSYASS TPLHVPVPRA LRMEEDSIRL PAHLRLQPIY 

        70         80         90        100        110        120 
WSRDDVAQWL KWAENEFSLR PIDSNTFEMN GKALLLLTKE DFRYRSPHSG DVLYELLQHI 

       130        140        150        160        170        180 
LKQRKPRILF SPFFHPGNSI HTQPEVILHQ NHEEDNCVQR TPRPSVDNVH HNPPTIELLH 

       190        200        210        220        230        240 
RSRSPITTNH RPSPDPEQRP LRSPLDNMIR RLSPAERAQG PRPHQENNHQ ESYPLSVSPM 

       250        260        270        280        290        300 
ENNHCPASSE SHPKPSSPRQ ESTRVIQLMP SPIMHPLILN PRHSVDFKQS RLSEDGLHRE 

       310        320        330        340        350        360 
GKPINLSHRE DLAYMNHIMV SVSPPEEHAM PIGRIADCRL LWDYVYQLLS DSRYENFIRW 

       370        380        390        400        410        420 
EDKESKIFRI VDPNGLARLW GNHKNRTNMT YEKMSRALRH YYKLNIIRKE PGQRLLFRFM 

       430        440        450 
KTPDEIMSGR TDRLEHLESQ ELDEQIYQED EC 

« Hide

References

« Hide 'large scale' references
[1]"Fusion of PDGF receptor beta to a novel ets-like gene, tel, in chronic myelomonocytic leukemia with t(5;12) chromosomal translocation."
Golub T.R., Barker G.F., Lovett M., Gilliland D.G.
Cell 77:307-316(1994) [PubMed: 8168137] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Urinary bladder.
[3]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[4]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis.
[5]"Genomic organization of TEL: the human ETS-variant gene 6."
Baens M., Peeters P., Guo C., Aerssens J., Marynen P.
Genome Res. 6:404-413(1996) [PubMed: 8743990] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 56-109; 111-336 AND 338-452.
[6]"Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia."
Mullighan C.G., Goorha S., Radtke I., Miller C.B., Coustan-Smith E., Dalton J.D., Girtman K., Mathew S., Ma J., Pounds S.B., Su X., Pui C.-H., Relling M.V., Evans W.E., Shurtleff S.A., Downing J.R.
Nature 446:758-764(2007) [PubMed: 17344859] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 56-452, CHROMOSOMAL TRANSLOCATION WITH PAX5.
[7]"Fusion of the TEL gene on 12p13 to the AML1 gene on 21q22 in acute lymphoblastic leukemia."
Golub T.R., Barker G.F., Bohlander S.K., Hiebert S.W., Ward D.C., Bray-Ward P., Morgan E., Raimondi S.C., Rowley J.D., Gilliland D.G.
Proc. Natl. Acad. Sci. U.S.A. 92:4917-4921(1995) [PubMed: 7761424] [Abstract]
Cited for: CHROMOSOMAL TRANSLOCATION WITH AML1.
[8]"The t(12;21) of acute lymphoblastic leukemia results in a tel-AML1 gene fusion."
Romana S.P., Mauchauffe M., le Coniat M., Chumakov I., le Paslier D., Berger R., Bernard O.A.
Blood 85:3662-3670(1995) [PubMed: 7780150] [Abstract]
Cited for: CHROMOSOMAL TRANSLOCATION WITH AML1.
[9]"Fusion of TEL/ETV6 to a novel ACS2 in myelodysplastic syndrome and acute myelogenous leukemia with t(5;12)(q31;p13)."
Yagasaki F., Jinnai I., Yoshida S., Yokoyama Y., Matsuda A., Kusumoto S., Kobayashi H., Terasaki H., Ohyashiki K., Asou N., Murohashi I., Bessho M., Hirashima K.
Genes Chromosomes Cancer 26:192-202(1999) [PubMed: 10502316] [Abstract]
Cited for: CHROMOSOMAL TRANSLOCATION WITH ACSL6.
[10]"Fusion of a novel gene, BTL, to ETV6 in acute myeloid leukemias with a t(4;12)(q11-q12;p13)."
Cools J., Bilhou-Nabera C., Wlodarska I., Cabrol C., Talmant P., Bernard P., Hagemeijer A., Marynen P.
Blood 94:1820-1824(1999) [PubMed: 10477709] [Abstract]
Cited for: CHROMOSOMAL TRANSLOCATION WITH CHIC2.
[11]"Functional regulation of TEL by p38-induced phosphorylation."
Arai H., Maki K., Waga K., Sasaki K., Nakamura Y., Imai Y., Kurokawa M., Hirai H., Mitani K.
Biochem. Biophys. Res. Commun. 299:116-125(2002) [PubMed: 12435397] [Abstract]
Cited for: PHOSPHORYLATION AT SER-22 AND SER-257, MUTAGENESIS OF SER-213; SER-238 AND SER-257.
[12]"A novel gene, MDS2, is fused to ETV6/TEL in a t(1;12)(p36.1;p13) in a patient with myelodysplastic syndrome."
Odero M.D., Vizmanos J.L., Roman J.P., Lahortiga I., Panizo C., Calasanz M.J., Zeleznik-Le N.J., Rowley J.D., Novo F.J.
Genes Chromosomes Cancer 35:11-19(2002) [PubMed: 12203785] [Abstract]
Cited for: CHROMOSOMAL TRANSLOCATION WITH MDS2.
[13]"Response to imatinib mesylate in patients with chronic myeloproliferative diseases with rearrangements of the platelet-derived growth factor receptor beta."
Apperley J.F., Gardembas M., Melo J.V., Russell-Jones R., Bain B.J., Baxter E.J., Chase A., Chessells J.M., Colombat M., Dearden C.E., Dimitrijevic S., Mahon F.-X., Marin D., Nikolova Z., Olavarria E., Silberman S., Schultheis B., Cross N.C.P., Goldman J.M.
N. Engl. J. Med. 347:481-487(2002) [PubMed: 12181402] [Abstract]
Cited for: CHROMOSOMAL TRANSLOCATION WITH PDGFRB.
[14]"The human L(3)MBT Polycomb group protein is a transcriptional repressor and interacts physically and functionally with TEL (ETV6)."
Boccuni P., MacGrogan D., Scandura J.M., Nimer S.D.
J. Biol. Chem. 278:15412-15420(2003) [PubMed: 12588862] [Abstract]
Cited for: INTERACTION WITH L3MBTL1.
[15]"The histone deacetylase 9 gene encodes multiple protein isoforms."
Petrie K., Guidez F., Howell L., Healy L., Waxman S., Greaves M., Zelent A.
J. Biol. Chem. 278:16059-16072(2003) [PubMed: 12590135] [Abstract]
Cited for: INTERACTION WITH HDAC9.
[16]"Somatic heterozygous mutations in ETV6 (TEL) and frequent absence of ETV6 protein in acute myeloid leukemia."
Barjesteh van Waalwijk van Doorn-Khosrovani S., Spensberger D., de Knegt Y., Tang M., Loewenberg B., Delwel R.
Oncogene 24:4129-4137(2005) [PubMed: 15806161] [Abstract]
Cited for: INVOLVEMENT IN AML, VARIANT GLY-344 INS, CHARACTERIZATION OF VARIANT GLY-344 INS.
[17]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-18 AND SER-22, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[18]"Large-scale proteomics analysis of the human kinome."
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H.
Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-16; SER-22 AND SER-213, MASS SPECTROMETRY.
[19]"Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-16; THR-18 AND SER-22, MASS SPECTROMETRY.
Tissue: Leukemic T-cell.
[20]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed: 19608861] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-11 AND LYS-302, MASS SPECTROMETRY.
[21]"Solution structure of ets domain transcriptional factor ETV6 protein."
RIKEN structural genomics initiative (RSGI)
Submitted (DEC-2006) to the PDB data bank
Cited for: STRUCTURE BY NMR OF 338-442.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U11732 mRNA. Translation: AAA19786.1.
AK289441 mRNA. Translation: BAF82130.1.
CH471094 Genomic DNA. Translation: EAW96240.1.
BC043399 mRNA. Translation: AAH43399.1.
U61375 Genomic DNA. Translation: AAC50690.1.
U63312 Genomic DNA. Translation: AAB17134.1.
U63313 Genomic DNA. Translation: AAB17135.1.
DQ841178 mRNA. Translation: ABI30005.1. Different initiation.
IPIIPI00013159.
RefSeqNP_001978.1. NM_001987.4.
UniGeneHs.504765.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1JI7X-ray1.45A/B/C47-123[»]
1LKYX-ray2.30A/B/C/D/E/F47-123[»]
2DAONMR-A338-442[»]
2QARX-ray2.40A/B/D/E47-124[»]
2QB0X-ray2.56A/C47-123[»]
2QB1X-ray2.61A/B47-121[»]
ProteinModelPortalP41212.
SMRP41212. Positions 21-125, 338-442.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-17028N.
IntActP41212. 7 interactions.
STRINGP41212.

PTM databases

PhosphoSiteP41212.

Polymorphism databases

DMDM730927.

Proteomic databases

PeptideAtlasP41212.
PRIDEP41212.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000266427; ENSP00000266427; ENSG00000139083.
GeneID2120.
KEGGhsa:2120.
UCSCuc001qzz.1. human.

Organism-specific databases

CTD2120.
GeneCardsGC12P011703.
H-InvDBHIX0026395.
HGNCHGNC:3495. ETV6.
HPAHPA000264.
MIM131440. phenotype.
600618. gene.
601626. phenotype.
neXtProtNX_P41212.
Orphanet2030. Fibrosarcoma.
99860. Precursor B-cell acute lymphoblastic leukemia.
PharmGKBPA27909.
GenAtlasSearch...

Phylogenomic databases

HOGENOMHBG716146.
HOVERGENHBG005617.
InParanoidP41212.
OMANPRHSMD.
OrthoDBEOG4ZS938.
PhylomeDBP41212.

Gene expression databases

ArrayExpressP41212.
BgeeP41212.
CleanExHS_ETV6.
GenevestigatorP41212.
GermOnlineENSG00000139083. Homo sapiens.

Family and domain databases

InterProIPR000418. Ets.
IPR003118. Pointed_dom.
IPR013761. SAM/pointed.
IPR011991. WHTH_trsnscrt_rep_DNA-bd.
[Graphical view]
Gene3DG3DSA:1.10.150.50. SAM_type. 1 hit.
G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
KOK03211.
PfamPF00178. Ets. 1 hit.
PF02198. SAM_PNT. 1 hit.
[Graphical view]
PRINTSPR00454. ETSDOMAIN.
SMARTSM00413. ETS. 1 hit.
SM00251. SAM_PNT. 1 hit.
[Graphical view]
SUPFAMSSF47769. SAM_homology. 1 hit.
PROSITEPS00345. ETS_DOMAIN_1. False negative.
PS00346. ETS_DOMAIN_2. 1 hit.
PS50061. ETS_DOMAIN_3. 1 hit.
PS51433. PNT. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio8571.
SOURCESearch...

Entry information

Entry nameETV6_HUMAN
AccessionPrimary (citable) accession number: P41212
Secondary accession number(s): A3QVP6 expand/collapse secondary AC list , A8K076, Q9UMF6, Q9UMF7, Q9UMG0
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: January 25, 2012
This is version 130 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 12

Human chromosome 12: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families