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Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
With S5 and S12 plays an important role in translational accuracy.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBAPH198804:G1FZU-511-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4UniRule annotation
Gene namesi
Name:rpsDUniRule annotation
Ordered Locus Names:BUsg_481
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesErwiniaceaeBuchnera
Proteomesi
  • UP000000416 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001323541 – 20630S ribosomal protein S4Add BLAST206

Proteomic databases

PRIDEiP41186

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Protein-protein interaction databases

STRINGi198804.BUsg481

Structurei

3D structure databases

ProteinModelPortaliP41186
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini96 – 156S4 RNA-bindingUniRule annotationAdd BLAST61

Sequence similaritiesi

Belongs to the universal ribosomal protein uS4 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105G6W Bacteria
COG0522 LUCA
KOiK02986
OMAiDNVVFRM
OrthoDBiPOG091H00KS

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
HAMAPiMF_01306_B Ribosomal_S4_B, 1 hit
InterProiView protein in InterPro
IPR022801 Ribosomal_S4/S9
IPR001912 Ribosomal_S4/S9_N
IPR005709 Ribosomal_S4_bac-type
IPR018079 Ribosomal_S4_CS
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PANTHERiPTHR11831 PTHR11831, 1 hit
PTHR11831:SF4 PTHR11831:SF4, 1 hit
PfamiView protein in Pfam
PF00163 Ribosomal_S4, 1 hit
PF01479 S4, 1 hit
SMARTiView protein in SMART
SM01390 Ribosomal_S4, 1 hit
SM00363 S4, 1 hit
TIGRFAMsiTIGR01017 rpsD_bact, 1 hit
PROSITEiView protein in PROSITE
PS00632 RIBOSOMAL_S4, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

P41186-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARYLGPKLK LSRREGTDLF LKSGFRSIDS KCKLEHPPGQ HGVRKPRLSD
60 70 80 90 100
YAIQLREKQK VRRLYGVLER QFRIYYKKAS RSKGNTGENL LQLLERRLDN
110 120 130 140 150
VVYRMGFGCT RSESRQLISH KSIKVNNNIV NIASYQISPN DRISVRDKSK
160 170 180 190 200
NQSRIKAALE LTEQREKLMW IEVNVTKMEG IFKRFPERSD LSAEINEHLI

VELYSK
Length:206
Mass (Da):24,140
Last modified:August 30, 2002 - v3
Checksum:iC6B7C5828B57EFBC
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti53I → Y in AAC05398 (Ref. 1) Curated1
Sequence conflicti174N → D in AAC05398 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M74510 Genomic DNA Translation: AAC05398.1
AE013218 Genomic DNA Translation: AAM68024.1
RefSeqiWP_011053990.1, NC_004061.1

Genome annotation databases

EnsemblBacteriaiAAM68024; AAM68024; BUsg_481
KEGGibas:BUsg_481

Similar proteinsi

Entry informationi

Entry nameiRS4_BUCAP
AccessioniPrimary (citable) accession number: P41186
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: August 30, 2002
Last modified: March 28, 2018
This is version 111 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health