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P41186

- RS4_BUCAP

UniProt

P41186 - RS4_BUCAP

Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 91 (01 Oct 2014)
      Sequence version 3 (30 Aug 2002)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
    With S5 and S12 plays an important role in translational accuracy.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-509-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S4UniRule annotation
    Gene namesi
    Name:rpsDUniRule annotation
    Ordered Locus Names:BUsg_481
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20620630S ribosomal protein S4PRO_0000132354Add
    BLAST

    Proteomic databases

    PRIDEiP41186.

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

    Protein-protein interaction databases

    STRINGi198804.BUsg481.

    Structurei

    3D structure databases

    ProteinModelPortaliP41186.
    SMRiP41186. Positions 2-206.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini96 – 15661S4 RNA-bindingUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S4P family.UniRule annotation
    Contains 1 S4 RNA-binding domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0522.
    KOiK02986.
    OMAiTCKLSRR.
    OrthoDBiEOG6N3CXM.

    Family and domain databases

    Gene3Di1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPiMF_01306_B. Ribosomal_S4_B.
    InterProiIPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR018079. Ribosomal_S4_CS.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PANTHERiPTHR11831. PTHR11831. 1 hit.
    PfamiPF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01017. rpsD_bact. 1 hit.
    PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P41186-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARYLGPKLK LSRREGTDLF LKSGFRSIDS KCKLEHPPGQ HGVRKPRLSD    50
    YAIQLREKQK VRRLYGVLER QFRIYYKKAS RSKGNTGENL LQLLERRLDN 100
    VVYRMGFGCT RSESRQLISH KSIKVNNNIV NIASYQISPN DRISVRDKSK 150
    NQSRIKAALE LTEQREKLMW IEVNVTKMEG IFKRFPERSD LSAEINEHLI 200
    VELYSK 206
    Length:206
    Mass (Da):24,140
    Last modified:August 30, 2002 - v3
    Checksum:iC6B7C5828B57EFBC
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti53 – 531I → Y in AAC05398. 1 PublicationCurated
    Sequence conflicti174 – 1741N → D in AAC05398. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M74510 Genomic DNA. Translation: AAC05398.1.
    AE013218 Genomic DNA. Translation: AAM68024.1.
    RefSeqiNP_660813.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM68024; AAM68024; BUsg_481.
    GeneIDi1005688.
    KEGGibas:BUsg481.
    PATRICi21247826. VBIBucAph100086_0508.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M74510 Genomic DNA. Translation: AAC05398.1 .
    AE013218 Genomic DNA. Translation: AAM68024.1 .
    RefSeqi NP_660813.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali P41186.
    SMRi P41186. Positions 2-206.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg481.

    Proteomic databases

    PRIDEi P41186.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM68024 ; AAM68024 ; BUsg_481 .
    GeneIDi 1005688.
    KEGGi bas:BUsg481.
    PATRICi 21247826. VBIBucAph100086_0508.

    Phylogenomic databases

    eggNOGi COG0522.
    KOi K02986.
    OMAi TCKLSRR.
    OrthoDBi EOG6N3CXM.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-509-MONOMER.

    Family and domain databases

    Gene3Di 1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPi MF_01306_B. Ribosomal_S4_B.
    InterProi IPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR018079. Ribosomal_S4_CS.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    PANTHERi PTHR11831. PTHR11831. 1 hit.
    Pfami PF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01017. rpsD_bact. 1 hit.
    PROSITEi PS00632. RIBOSOMAL_S4. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Buchnera aphidicola, the endosymbiont of aphids, contains genes for four ribosomal RNA proteins, initiation factor-3, and the alpha subunit of RNA polymerase."
      Munson M.A., Baumann L., Baumann P.
      Curr. Microbiol. 24:23-29(1992)
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiRS4_BUCAP
    AccessioniPrimary (citable) accession number: P41186
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: August 30, 2002
    Last modified: October 1, 2014
    This is version 91 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3