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P41186 (RS4_BUCAP) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 89. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S4
Gene names
Name:rpsD
Ordered Locus Names:BUsg_481
OrganismBuchnera aphidicola subsp. Schizaphis graminum (strain Sg) [Complete proteome] [HAMAP]
Taxonomic identifier198804 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit By similarity. HAMAP-Rule MF_01306

With S5 and S12 plays an important role in translational accuracy By similarity. HAMAP-Rule MF_01306

Subunit structure

Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity.

Sequence similarities

Belongs to the ribosomal protein S4P family.

Contains 1 S4 RNA-binding domain.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentsmall ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20620630S ribosomal protein S4 HAMAP-Rule MF_01306
PRO_0000132354

Regions

Domain96 – 15661S4 RNA-binding

Experimental info

Sequence conflict531I → Y in AAC05398. Ref.1
Sequence conflict1741N → D in AAC05398. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P41186 [UniParc].

Last modified August 30, 2002. Version 3.
Checksum: C6B7C5828B57EFBC

FASTA20624,140
        10         20         30         40         50         60 
MARYLGPKLK LSRREGTDLF LKSGFRSIDS KCKLEHPPGQ HGVRKPRLSD YAIQLREKQK 

        70         80         90        100        110        120 
VRRLYGVLER QFRIYYKKAS RSKGNTGENL LQLLERRLDN VVYRMGFGCT RSESRQLISH 

       130        140        150        160        170        180 
KSIKVNNNIV NIASYQISPN DRISVRDKSK NQSRIKAALE LTEQREKLMW IEVNVTKMEG 

       190        200 
IFKRFPERSD LSAEINEHLI VELYSK 

« Hide

References

« Hide 'large scale' references
[1]"Buchnera aphidicola, the endosymbiont of aphids, contains genes for four ribosomal RNA proteins, initiation factor-3, and the alpha subunit of RNA polymerase."
Munson M.A., Baumann L., Baumann P.
Curr. Microbiol. 24:23-29(1992)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"50 million years of genomic stasis in endosymbiotic bacteria."
Tamas I., Klasson L., Canbaeck B., Naeslund A.K., Eriksson A.-S., Wernegreen J.J., Sandstroem J.P., Moran N.A., Andersson S.G.E.
Science 296:2376-2379(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Sg.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M74510 Genomic DNA. Translation: AAC05398.1.
AE013218 Genomic DNA. Translation: AAM68024.1.
RefSeqNP_660813.1. NC_004061.1.

3D structure databases

ProteinModelPortalP41186.
SMRP41186. Positions 2-206.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING198804.BUsg481.

Proteomic databases

PRIDEP41186.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAM68024; AAM68024; BUsg_481.
GeneID1005688.
KEGGbas:BUsg481.
PATRIC21247826. VBIBucAph100086_0508.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0522.
KOK02986.
OMATHGHILV.
OrthoDBEOG6N3CXM.
ProtClustDBPRK05327.

Enzyme and pathway databases

BioCycBAPH198804:GHMG-509-MONOMER.

Family and domain databases

Gene3D1.10.1050.10. 1 hit.
3.10.290.10. 1 hit.
HAMAPMF_01306_B. Ribosomal_S4_B.
InterProIPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR005709. Ribosomal_S4_bac-type.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERPTHR11831. PTHR11831. 1 hit.
PfamPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
TIGRFAMsTIGR01017. rpsD_bact. 1 hit.
PROSITEPS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS4_BUCAP
AccessionPrimary (citable) accession number: P41186
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: August 30, 2002
Last modified: February 19, 2014
This is version 89 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Buchnera aphidicola (subsp. Schizaphis graminum)

Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names