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P41185

- RPOC_BUCAP

UniProt

P41185 - RPOC_BUCAP

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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-35-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:BUsg_034
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14131413DNA-directed RNA polymerase subunit beta'PRO_0000067721Add
BLAST

Proteomic databases

PRIDEiP41185.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi198804.BUsg034.

Structurei

3D structure databases

ProteinModelPortaliP41185.
SMRiP41185. Positions 20-165, 944-1128.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0086.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

P41185-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKDLLKFLKA QTKNEDFDAI KISLASPDMI RSWSFGEVKK PETINYRTFK
60 70 80 90 100
PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQSKVRRE
110 120 130 140 150
RMGHIELSSP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIETG
160 170 180 190 200
MTNLEKRQIL TEEQYLDALE EFGDEFYATM GAEAIQSLLK DINLVKECEN
210 220 230 240 250
LRIELNETNS ETKRKKLTKR IKLLESFIQS NNKPEWMILT VLPVLPPDLR
260 270 280 290 300
PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
310 320 330 340 350
EAIDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS
360 370 380 390 400
GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLEVRGL ATTIKAAKKM
410 420 430 440 450
VEREEAIVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH
460 470 480 490 500
PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII
510 520 530 540 550
VPSQDVVLGL YYMTREKING KGEGMILNGS NEAEKVYRLE IAELHSLVKV
560 570 580 590 600
RITEYKKNKD QSFIPKTKII NTTIGRAILW MIVPKGLPFS IVNQTLGKKD
610 620 630 640 650
ISKMLNTCYR ILGLKPTVAF ADQIMYTGFA YAARSGASVG IDDMVIPVKK
660 670 680 690 700
LNIIHEAEIE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMEN
710 720 730 740 750
LSTESVFNKK GEKQKQISFN SIFMMADSGA RGSAAQIRQL AGMRGLMAKP
760 770 780 790 800
DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL
810 820 830 840 850
VDVAQDLVVT QNDCGTHEGI LMTPLIEGGD VKEPLRERVL GRVTAEKILI
860 870 880 890 900
PNTENILIER NTLLNEQWCD LLEKNSIDNV KVRSVVNCET DFGVCAYCYG
910 920 930 940 950
RDLARGNLVN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAATESSI
960 970 980 990 1000
QIKNKGIINL NNAKSVTNSS GKIVITSRNV ELNIIDNFRR TKETYKVPYG
1010 1020 1030 1040 1050
AIMAKGHGEQ VNSGETVAKW DPHTIPVITE VSGFVRFVDM IDGQSITRQA
1060 1070 1080 1090 1100
DELTGLSSIV VLDTAERMTI GKDLRPSLKI VDRDGNDVLI SGTEMPAQYF
1110 1120 1130 1140 1150
LPGKAIVQLD DRVQISSGDT LARVPQESGG TKDITGGLPR VADLFEARRP
1160 1170 1180 1190 1200
KELAILAEIS GIISFGKETK GKRRLIITPV DGSDAYEEMI PKWRQLNVFE
1210 1220 1230 1240 1250
GERVERGDVI SDGPESPHDI LRLRGVQAVT KYIVNEVQEV YRLQGVKIND
1260 1270 1280 1290 1300
KHIEVIIRQM LRKATVIKSG NSEFLDGEQV EFSRIKISNR ILNKQSKIPA
1310 1320 1330 1340 1350
TFSRDLLGIT KASLATESFI SAASFQETTR VLTESAVAGK KDELRGLKEN
1360 1370 1380 1390 1400
VIVGRLIPAG TGYAYHKERL NRRHTVNTNQ IKPNNSSSQI SAEEASASLS
1410
ELLNSTLIQH DHT
Length:1,413
Mass (Da):157,681
Last modified:August 30, 2002 - v2
Checksum:i1D34A4DFD5971527
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM67605.1.
Z11913 Genomic DNA. Translation: CAA77971.1.
PIRiS32681.
RefSeqiNP_660394.1. NC_004061.1.
WP_011053571.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM67605; AAM67605; BUsg_034.
GeneIDi1005850.
KEGGibas:BUsg034.
PATRICi21246825. VBIBucAph100086_0034.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM67605.1 .
Z11913 Genomic DNA. Translation: CAA77971.1 .
PIRi S32681.
RefSeqi NP_660394.1. NC_004061.1.
WP_011053571.1. NC_004061.1.

3D structure databases

ProteinModelPortali P41185.
SMRi P41185. Positions 20-165, 944-1128.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg034.

Proteomic databases

PRIDEi P41185.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM67605 ; AAM67605 ; BUsg_034 .
GeneIDi 1005850.
KEGGi bas:BUsg034.
PATRICi 21246825. VBIBucAph100086_0034.

Phylogenomic databases

eggNOGi COG0086.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-35-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.
  2. "Sequence analysis of an aphid endosymbiont DNA fragment containing rpoB (beta-subunit of RNA polymerase) and portions of rplL and rpoC."
    Clark M.A., Baumann L., Baumann P.
    Curr. Microbiol. 25:283-290(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-209.

Entry informationi

Entry nameiRPOC_BUCAP
AccessioniPrimary (citable) accession number: P41185
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: August 30, 2002
Last modified: October 1, 2014
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3