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P41185

- RPOC_BUCAP

UniProt

P41185 - RPOC_BUCAP

Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 92 (01 Oct 2014)
      Sequence version 2 (30 Aug 2002)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-35-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP subunit beta'UniRule annotation
    Alternative name(s):
    RNA polymerase subunit beta'UniRule annotation
    Transcriptase subunit beta'UniRule annotation
    Gene namesi
    Name:rpoCUniRule annotation
    Ordered Locus Names:BUsg_034
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14131413DNA-directed RNA polymerase subunit beta'PRO_0000067721Add
    BLAST

    Proteomic databases

    PRIDEiP41185.

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi198804.BUsg034.

    Structurei

    3D structure databases

    ProteinModelPortaliP41185.
    SMRiP41185. Positions 20-165, 944-1128.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase beta' chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0086.
    KOiK03046.
    OMAiAYDSEFL.
    OrthoDBiEOG6M9DS6.

    Family and domain databases

    HAMAPiMF_01322. RNApol_bact_RpoC.
    MF_01323. RNApol_bact_RpoC1.
    InterProiIPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view]
    PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view]
    SMARTiSM00663. RPOLA_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P41185-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKDLLKFLKA QTKNEDFDAI KISLASPDMI RSWSFGEVKK PETINYRTFK     50
    PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQSKVRRE 100
    RMGHIELSSP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIETG 150
    MTNLEKRQIL TEEQYLDALE EFGDEFYATM GAEAIQSLLK DINLVKECEN 200
    LRIELNETNS ETKRKKLTKR IKLLESFIQS NNKPEWMILT VLPVLPPDLR 250
    PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 300
    EAIDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS 350
    GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLEVRGL ATTIKAAKKM 400
    VEREEAIVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH 450
    PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII 500
    VPSQDVVLGL YYMTREKING KGEGMILNGS NEAEKVYRLE IAELHSLVKV 550
    RITEYKKNKD QSFIPKTKII NTTIGRAILW MIVPKGLPFS IVNQTLGKKD 600
    ISKMLNTCYR ILGLKPTVAF ADQIMYTGFA YAARSGASVG IDDMVIPVKK 650
    LNIIHEAEIE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMEN 700
    LSTESVFNKK GEKQKQISFN SIFMMADSGA RGSAAQIRQL AGMRGLMAKP 750
    DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL 800
    VDVAQDLVVT QNDCGTHEGI LMTPLIEGGD VKEPLRERVL GRVTAEKILI 850
    PNTENILIER NTLLNEQWCD LLEKNSIDNV KVRSVVNCET DFGVCAYCYG 900
    RDLARGNLVN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAATESSI 950
    QIKNKGIINL NNAKSVTNSS GKIVITSRNV ELNIIDNFRR TKETYKVPYG 1000
    AIMAKGHGEQ VNSGETVAKW DPHTIPVITE VSGFVRFVDM IDGQSITRQA 1050
    DELTGLSSIV VLDTAERMTI GKDLRPSLKI VDRDGNDVLI SGTEMPAQYF 1100
    LPGKAIVQLD DRVQISSGDT LARVPQESGG TKDITGGLPR VADLFEARRP 1150
    KELAILAEIS GIISFGKETK GKRRLIITPV DGSDAYEEMI PKWRQLNVFE 1200
    GERVERGDVI SDGPESPHDI LRLRGVQAVT KYIVNEVQEV YRLQGVKIND 1250
    KHIEVIIRQM LRKATVIKSG NSEFLDGEQV EFSRIKISNR ILNKQSKIPA 1300
    TFSRDLLGIT KASLATESFI SAASFQETTR VLTESAVAGK KDELRGLKEN 1350
    VIVGRLIPAG TGYAYHKERL NRRHTVNTNQ IKPNNSSSQI SAEEASASLS 1400
    ELLNSTLIQH DHT 1413
    Length:1,413
    Mass (Da):157,681
    Last modified:August 30, 2002 - v2
    Checksum:i1D34A4DFD5971527
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67605.1.
    Z11913 Genomic DNA. Translation: CAA77971.1.
    PIRiS32681.
    RefSeqiNP_660394.1. NC_004061.1.
    WP_011053571.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM67605; AAM67605; BUsg_034.
    GeneIDi1005850.
    KEGGibas:BUsg034.
    PATRICi21246825. VBIBucAph100086_0034.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67605.1 .
    Z11913 Genomic DNA. Translation: CAA77971.1 .
    PIRi S32681.
    RefSeqi NP_660394.1. NC_004061.1.
    WP_011053571.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali P41185.
    SMRi P41185. Positions 20-165, 944-1128.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg034.

    Proteomic databases

    PRIDEi P41185.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM67605 ; AAM67605 ; BUsg_034 .
    GeneIDi 1005850.
    KEGGi bas:BUsg034.
    PATRICi 21246825. VBIBucAph100086_0034.

    Phylogenomic databases

    eggNOGi COG0086.
    KOi K03046.
    OMAi AYDSEFL.
    OrthoDBi EOG6M9DS6.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-35-MONOMER.

    Family and domain databases

    HAMAPi MF_01322. RNApol_bact_RpoC.
    MF_01323. RNApol_bact_RpoC1.
    InterProi IPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view ]
    Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view ]
    SMARTi SM00663. RPOLA_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.
    2. "Sequence analysis of an aphid endosymbiont DNA fragment containing rpoB (beta-subunit of RNA polymerase) and portions of rplL and rpoC."
      Clark M.A., Baumann L., Baumann P.
      Curr. Microbiol. 25:283-290(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-209.

    Entry informationi

    Entry nameiRPOC_BUCAP
    AccessioniPrimary (citable) accession number: P41185
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: August 30, 2002
    Last modified: October 1, 2014
    This is version 92 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3