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P41185

- RPOC_BUCAP

UniProt

P41185 - RPOC_BUCAP

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Protein

DNA-directed RNA polymerase subunit beta'

Gene
rpoC, BUsg_034
Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-35-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
Short name:
RNAP subunit beta'
Alternative name(s):
RNA polymerase subunit beta'
Transcriptase subunit beta'
Gene namesi
Name:rpoC
Ordered Locus Names:BUsg_034
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14131413DNA-directed RNA polymerase subunit beta'UniRule annotationPRO_0000067721Add
BLAST

Proteomic databases

PRIDEiP41185.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.

Protein-protein interaction databases

STRINGi198804.BUsg034.

Structurei

3D structure databases

ProteinModelPortaliP41185.
SMRiP41185. Positions 20-165, 944-1128.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0086.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

P41185-1 [UniParc]FASTAAdd to Basket

« Hide

MKDLLKFLKA QTKNEDFDAI KISLASPDMI RSWSFGEVKK PETINYRTFK     50
PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQSKVRRE 100
RMGHIELSSP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIETG 150
MTNLEKRQIL TEEQYLDALE EFGDEFYATM GAEAIQSLLK DINLVKECEN 200
LRIELNETNS ETKRKKLTKR IKLLESFIQS NNKPEWMILT VLPVLPPDLR 250
PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 300
EAIDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS 350
GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLEVRGL ATTIKAAKKM 400
VEREEAIVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH 450
PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII 500
VPSQDVVLGL YYMTREKING KGEGMILNGS NEAEKVYRLE IAELHSLVKV 550
RITEYKKNKD QSFIPKTKII NTTIGRAILW MIVPKGLPFS IVNQTLGKKD 600
ISKMLNTCYR ILGLKPTVAF ADQIMYTGFA YAARSGASVG IDDMVIPVKK 650
LNIIHEAEIE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMEN 700
LSTESVFNKK GEKQKQISFN SIFMMADSGA RGSAAQIRQL AGMRGLMAKP 750
DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL 800
VDVAQDLVVT QNDCGTHEGI LMTPLIEGGD VKEPLRERVL GRVTAEKILI 850
PNTENILIER NTLLNEQWCD LLEKNSIDNV KVRSVVNCET DFGVCAYCYG 900
RDLARGNLVN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAATESSI 950
QIKNKGIINL NNAKSVTNSS GKIVITSRNV ELNIIDNFRR TKETYKVPYG 1000
AIMAKGHGEQ VNSGETVAKW DPHTIPVITE VSGFVRFVDM IDGQSITRQA 1050
DELTGLSSIV VLDTAERMTI GKDLRPSLKI VDRDGNDVLI SGTEMPAQYF 1100
LPGKAIVQLD DRVQISSGDT LARVPQESGG TKDITGGLPR VADLFEARRP 1150
KELAILAEIS GIISFGKETK GKRRLIITPV DGSDAYEEMI PKWRQLNVFE 1200
GERVERGDVI SDGPESPHDI LRLRGVQAVT KYIVNEVQEV YRLQGVKIND 1250
KHIEVIIRQM LRKATVIKSG NSEFLDGEQV EFSRIKISNR ILNKQSKIPA 1300
TFSRDLLGIT KASLATESFI SAASFQETTR VLTESAVAGK KDELRGLKEN 1350
VIVGRLIPAG TGYAYHKERL NRRHTVNTNQ IKPNNSSSQI SAEEASASLS 1400
ELLNSTLIQH DHT 1413
Length:1,413
Mass (Da):157,681
Last modified:August 30, 2002 - v2
Checksum:i1D34A4DFD5971527
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013218 Genomic DNA. Translation: AAM67605.1.
Z11913 Genomic DNA. Translation: CAA77971.1.
PIRiS32681.
RefSeqiNP_660394.1. NC_004061.1.
WP_011053571.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM67605; AAM67605; BUsg_034.
GeneIDi1005850.
KEGGibas:BUsg034.
PATRICi21246825. VBIBucAph100086_0034.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013218 Genomic DNA. Translation: AAM67605.1 .
Z11913 Genomic DNA. Translation: CAA77971.1 .
PIRi S32681.
RefSeqi NP_660394.1. NC_004061.1.
WP_011053571.1. NC_004061.1.

3D structure databases

ProteinModelPortali P41185.
SMRi P41185. Positions 20-165, 944-1128.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg034.

Proteomic databases

PRIDEi P41185.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM67605 ; AAM67605 ; BUsg_034 .
GeneIDi 1005850.
KEGGi bas:BUsg034.
PATRICi 21246825. VBIBucAph100086_0034.

Phylogenomic databases

eggNOGi COG0086.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-35-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.
  2. "Sequence analysis of an aphid endosymbiont DNA fragment containing rpoB (beta-subunit of RNA polymerase) and portions of rplL and rpoC."
    Clark M.A., Baumann L., Baumann P.
    Curr. Microbiol. 25:283-290(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-209.

Entry informationi

Entry nameiRPOC_BUCAP
AccessioniPrimary (citable) accession number: P41185
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: August 30, 2002
Last modified: September 3, 2014
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi