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Protein

60S ribosomal protein L13

Gene

RpL13

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: FlyBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DME-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DME-72689 Formation of a pool of free 40S subunits
R-DME-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DME-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DME-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13
Alternative name(s):
BBC1 protein homolog
Gene namesi
Name:RpL13
Synonyms:bbc1
ORF Names:CG4651
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 2L

Organism-specific databases

FlyBaseiFBgn0011272 RpL13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001929251 – 21860S ribosomal protein L13Add BLAST218

Proteomic databases

PaxDbiP41126
PRIDEiP41126

Expressioni

Gene expression databases

BgeeiFBgn0011272
ExpressionAtlasiP41126 differential
GenevisibleiP41126 DM

Interactioni

Protein-protein interaction databases

BioGridi60423, 20 interactors
DIPiDIP-19420N
IntActiP41126, 11 interactors
MINTiP41126
STRINGi7227.FBpp0079484

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00CL1-218[»]
ProteinModelPortaliP41126
SMRiP41126
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
GeneTreeiENSGT00390000007818
InParanoidiP41126
KOiK02873
OMAiIVVDHRR
OrthoDBiEOG091G0KGO
PhylomeDBiP41126

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit

Sequencei

Sequence statusi: Complete.

P41126-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKGNNMIPN QHYHKWWQRH VKTWFNQPAR KVRRHANRVK KAKAVFPRPA
60 70 80 90 100
SGALRPVVRC PTIRYHTKLR AGRGFTLEEL KGAGIGANFA KTIGIAVDRR
110 120 130 140 150
RKNKSLESRQ RNIQRLKEYR SKLILFPINE KKIRAGESSL EECKLATQLK
160 170 180 190 200
GPVLPIKNEQ PAVVEFREVT KDEKKFKAFA TLRKARTDAR LVGIRAKRAK
210
EAAESEDAAK GDPKKAKK
Length:218
Mass (Da):24,951
Last modified:February 1, 1995 - v1
Checksum:i2DBCF34B2E650A63
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X77926 Genomic DNA Translation: CAA54898.1
AE014134 Genomic DNA Translation: AAF52842.1
AE014134 Genomic DNA Translation: ABC65888.1
BT053725 mRNA Translation: ACK77643.1
BT128812 mRNA Translation: AEM72508.1
PIRiJC4260
S42877
RefSeqiNP_001033891.1, NM_001038802.2
NP_001260312.1, NM_001273383.2
NP_523530.1, NM_078806.4
UniGeneiDm.21541

Genome annotation databases

EnsemblMetazoaiFBtr0079888; FBpp0079484; FBgn0011272
FBtr0100164; FBpp0099517; FBgn0011272
FBtr0310482; FBpp0302626; FBgn0011272
GeneIDi34329
KEGGidme:Dmel_CG4651

Similar proteinsi

Entry informationi

Entry nameiRL13_DROME
AccessioniPrimary (citable) accession number: P41126
Secondary accession number(s): A4V0I6, B7FNN5, Q9VL55
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: March 28, 2018
This is version 135 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health