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Protein

60S acidic ribosomal protein P0

Gene

Os08g0130500

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S acidic ribosomal protein P0
Gene namesi
Ordered Locus Names:Os08g0130500, LOC_Os08g03640
ORF Names:P0582D05.130-1
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 8

Organism-specific databases

GrameneiP41095.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 31931860S acidic ribosomal protein P0PRO_0000154781Add
BLAST

Post-translational modificationi

Phosphorylated.By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP41095.
PRIDEiP41095.

Expressioni

Gene expression databases

ExpressionAtlasiP41095. baseline.

Interactioni

Subunit structurei

P0 forms a pentameric complex by interaction with dimers of P1 and P2.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os08g03640.1.

Structurei

3D structure databases

ProteinModelPortaliP41095.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10P family.Curated

Phylogenomic databases

eggNOGiCOG0244.
HOGENOMiHOG000210987.
InParanoidiP41095.
KOiK02941.
OMAiIGTNDNP.

Family and domain databases

InterProiIPR030670. L10E_eukaryotes.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PIRSFiPIRSF039087. L10E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P41095-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAIKRTKAEK KVAYDKKLCQ LLDEYTKVLI AVADNVGSNQ LQEIRKGLRG
60 70 80 90 100
DSIVLMGKNT LIRRCIKVHA DNTGNKEFLE LMPLLVGNVG LIFTKGDLKE
110 120 130 140 150
VREEVAKYKV GAPARVGLVA PVDVVVPPGN TGLDPSQTSF FQVLNIPTKI
160 170 180 190 200
NKGTVEIITP VELIKKGDKV GSSESALLAK LGIRPFSYGL VITNVYDSGS
210 220 230 240 250
VFSPEVLDLT EDDLMEKFAS GVSMVASVSL AISYPTIAAA PHMFLNGYKN
260 270 280 290 300
VLAVAVETEY SYPHADKIKE YLKDPSKFAV AAPVAADSGA AAPSAAKEEE
310
KKEEPEEESD GDLGMSLFD
Length:319
Mass (Da):34,378
Last modified:January 23, 2007 - v3
Checksum:iF54E748B62C92DD7
GO

Sequence cautioni

The sequence BAD09642.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D21130 mRNA. Translation: BAA04668.1.
AP004591 Genomic DNA. Translation: BAC66723.1.
AP004591 Genomic DNA. Translation: BAD09642.1. Sequence problems.
PIRiT04309.
RefSeqiNP_001060923.1. NM_001067458.1.
UniGeneiOs.12290.

Genome annotation databases

EnsemblPlantsiOS08T0130500-01; OS08T0130500-01; OS08G0130500.
GeneIDi4344590.
KEGGiosa:4344590.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D21130 mRNA. Translation: BAA04668.1.
AP004591 Genomic DNA. Translation: BAC66723.1.
AP004591 Genomic DNA. Translation: BAD09642.1. Sequence problems.
PIRiT04309.
RefSeqiNP_001060923.1. NM_001067458.1.
UniGeneiOs.12290.

3D structure databases

ProteinModelPortaliP41095.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os08g03640.1.

Proteomic databases

PaxDbiP41095.
PRIDEiP41095.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS08T0130500-01; OS08T0130500-01; OS08G0130500.
GeneIDi4344590.
KEGGiosa:4344590.

Organism-specific databases

GrameneiP41095.

Phylogenomic databases

eggNOGiCOG0244.
HOGENOMiHOG000210987.
InParanoidiP41095.
KOiK02941.
OMAiIGTNDNP.

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Gene expression databases

ExpressionAtlasiP41095. baseline.

Family and domain databases

InterProiIPR030670. L10E_eukaryotes.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PIRSFiPIRSF039087. L10E. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of a rice acidic ribosomal phosphoprotein P0 cDNA."
    Hihara Y., Umeda M., Hara C., Toriyama K., Uchimiya H.
    Plant Physiol. 105:753-754(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Anther.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "Rice proteome database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003."
    Komatsu S., Kojima K., Suzuki K., Ozaki K., Higo K.
    Nucleic Acids Res. 32:D388-D392(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-9.
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRLA0_ORYSJ
AccessioniPrimary (citable) accession number: P41095
Secondary accession number(s): Q7EZR2, Q7EZR7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: July 22, 2015
This is version 86 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.