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Protein

40S ribosomal protein S29-B

Gene

RPS29B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.1 Publication

Miscellaneous

Present with 5410 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for uS14 in yeast.Curated

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi21ZincSequence analysis1
Metal bindingi24ZincSequence analysis1
Metal bindingi39ZincSequence analysis1
Metal bindingi42ZincSequence analysis1

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD
  • zinc ion binding Source: GO_Central

GO - Biological processi

  • cytoplasmic translation Source: SGD

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-29477-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S29-B1 Publication
Alternative name(s):
S36
Small ribosomal subunit protein uS14-B1 Publication
YS29
Gene namesi
Name:RPS29B1 Publication
Synonyms:RPS36B, YS29B
Ordered Locus Names:YDL061C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome IV

Organism-specific databases

EuPathDBiFungiDB:YDL061C.
SGDiS000002219. RPS29B.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: SGD

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001310332 – 5640S ribosomal protein S29-BAdd BLAST55

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei25PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP41058.
PRIDEiP41058.

PTM databases

iPTMnetiP41058.

Interactioni

Subunit structurei

Component of the small ribosomal subunit (SSU). Mature yeast ribosomes consist of a small (40S) and a large (60S) subunit. The 40S small subunit contains 1 molecule of ribosomal RNA (18S rRNA) and 33 different proteins (encoded by 57 genes). The large 60S subunit contains 3 rRNA molecules (25S, 5.8S and 5S rRNA) and 46 different proteins (encoded by 81 genes) (PubMed:9559554, PubMed:22096102).1 Publication1 Publication

Protein-protein interaction databases

BioGridi31997. 191 interactors.
DIPiDIP-5230N.
IntActiP41058. 7 interactors.
MINTiMINT-492502.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K5Xmodel-N21-49[»]
4V4Belectron microscopy11.70AN21-56[»]
4V92electron microscopy3.70d5-56[»]
ProteinModelPortaliP41058.
SMRiP41058.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP41058.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000231300.
InParanoidiP41058.
KOiK02980.
OMAiCGTHEAV.
OrthoDBiEOG092C5WBL.

Family and domain databases

InterProiView protein in InterPro
IPR001209. Ribosomal_S14.
IPR018271. Ribosomal_S14_CS.
PfamiView protein in Pfam
PF00253. Ribosomal_S14. 1 hit.
PROSITEiView protein in PROSITE
PS00527. RIBOSOMAL_S14. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P41058-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHENVWFSH PRRFGKGSRQ CRVCSSHTGL VRKYDLNICR QCFREKANDI

GFHKYR
Length:56
Mass (Da):6,728
Last modified:January 23, 2007 - v3
Checksum:iF1AAE8CCE0E62552
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti7W → G AA sequence (PubMed:18782943).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D14677 Genomic DNA. Translation: BAA03508.1.
Z74109 Genomic DNA. Translation: CAA98624.1.
EF123148 mRNA. Translation: ABM97492.1.
BK006938 Genomic DNA. Translation: DAA11795.1.
PIRiS48504.
RefSeqiNP_010222.1. NM_001180120.1.

Genome annotation databases

EnsemblFungiiYDL061C; YDL061C; YDL061C.
GeneIDi851498.
KEGGisce:YDL061C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D14677 Genomic DNA. Translation: BAA03508.1.
Z74109 Genomic DNA. Translation: CAA98624.1.
EF123148 mRNA. Translation: ABM97492.1.
BK006938 Genomic DNA. Translation: DAA11795.1.
PIRiS48504.
RefSeqiNP_010222.1. NM_001180120.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K5Xmodel-N21-49[»]
4V4Belectron microscopy11.70AN21-56[»]
4V92electron microscopy3.70d5-56[»]
ProteinModelPortaliP41058.
SMRiP41058.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31997. 191 interactors.
DIPiDIP-5230N.
IntActiP41058. 7 interactors.
MINTiMINT-492502.

PTM databases

iPTMnetiP41058.

Proteomic databases

MaxQBiP41058.
PRIDEiP41058.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYDL061C; YDL061C; YDL061C.
GeneIDi851498.
KEGGisce:YDL061C.

Organism-specific databases

EuPathDBiFungiDB:YDL061C.
SGDiS000002219. RPS29B.

Phylogenomic databases

HOGENOMiHOG000231300.
InParanoidiP41058.
KOiK02980.
OMAiCGTHEAV.
OrthoDBiEOG092C5WBL.

Enzyme and pathway databases

BioCyciYEAST:G3O-29477-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP41058.
PROiPR:P41058.

Family and domain databases

InterProiView protein in InterPro
IPR001209. Ribosomal_S14.
IPR018271. Ribosomal_S14_CS.
PfamiView protein in Pfam
PF00253. Ribosomal_S14. 1 hit.
PROSITEiView protein in PROSITE
PS00527. RIBOSOMAL_S14. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS29B_YEAST
AccessioniPrimary (citable) accession number: P41058
Secondary accession number(s): A2TBP5, D6VRT5, P05761
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: April 12, 2017
This is version 135 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome IV
    Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.