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Protein

40S ribosomal protein S29-B

Gene

RPS29B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi21 – 211ZincSequence analysis
Metal bindingi24 – 241ZincSequence analysis
Metal bindingi39 – 391ZincSequence analysis
Metal bindingi42 – 421ZincSequence analysis

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD
  • zinc ion binding Source: GO_Central

GO - Biological processi

  • cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-29477-MONOMER.
ReactomeiR-SCE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SCE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SCE-72689. Formation of a pool of free 40S subunits.
R-SCE-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-SCE-72702. Ribosomal scanning and start codon recognition.
R-SCE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SCE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SCE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S29-B
Alternative name(s):
S36
YS29
Gene namesi
Name:RPS29B
Synonyms:RPS36B, YS29B
Ordered Locus Names:YDL061C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome IV

Organism-specific databases

EuPathDBiFungiDB:YDL061C.
SGDiS000002219. RPS29B.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved2 Publications
Chaini2 – 565540S ribosomal protein S29-BPRO_0000131033Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei25 – 251PhosphoserineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP41058.

PTM databases

iPTMnetiP41058.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi31997. 48 interactions.
DIPiDIP-5230N.
IntActiP41058. 7 interactions.
MINTiMINT-492502.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K5Xmodel-N21-49[»]
4V4Belectron microscopy11.70AN21-56[»]
4V92electron microscopy3.70d5-56[»]
ProteinModelPortaliP41058.
SMRiP41058. Positions 4-56.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP41058.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S14P family.Curated

Phylogenomic databases

HOGENOMiHOG000231300.
InParanoidiP41058.
KOiK02980.
OMAiCGTHEAV.
OrthoDBiEOG092C5WBL.

Family and domain databases

InterProiIPR001209. Ribosomal_S14.
IPR018271. Ribosomal_S14_CS.
[Graphical view]
PfamiPF00253. Ribosomal_S14. 1 hit.
[Graphical view]
PROSITEiPS00527. RIBOSOMAL_S14. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P41058-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHENVWFSH PRRFGKGSRQ CRVCSSHTGL VRKYDLNICR QCFREKANDI

GFHKYR
Length:56
Mass (Da):6,728
Last modified:January 23, 2007 - v3
Checksum:iF1AAE8CCE0E62552
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti7 – 71W → G AA sequence (PubMed:18782943).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D14677 Genomic DNA. Translation: BAA03508.1.
Z74109 Genomic DNA. Translation: CAA98624.1.
EF123148 mRNA. Translation: ABM97492.1.
BK006938 Genomic DNA. Translation: DAA11795.1.
PIRiS48504.
RefSeqiNP_010222.1. NM_001180120.1.

Genome annotation databases

EnsemblFungiiYDL061C; YDL061C; YDL061C.
GeneIDi851498.
KEGGisce:YDL061C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D14677 Genomic DNA. Translation: BAA03508.1.
Z74109 Genomic DNA. Translation: CAA98624.1.
EF123148 mRNA. Translation: ABM97492.1.
BK006938 Genomic DNA. Translation: DAA11795.1.
PIRiS48504.
RefSeqiNP_010222.1. NM_001180120.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K5Xmodel-N21-49[»]
4V4Belectron microscopy11.70AN21-56[»]
4V92electron microscopy3.70d5-56[»]
ProteinModelPortaliP41058.
SMRiP41058. Positions 4-56.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31997. 48 interactions.
DIPiDIP-5230N.
IntActiP41058. 7 interactions.
MINTiMINT-492502.

PTM databases

iPTMnetiP41058.

Proteomic databases

MaxQBiP41058.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYDL061C; YDL061C; YDL061C.
GeneIDi851498.
KEGGisce:YDL061C.

Organism-specific databases

EuPathDBiFungiDB:YDL061C.
SGDiS000002219. RPS29B.

Phylogenomic databases

HOGENOMiHOG000231300.
InParanoidiP41058.
KOiK02980.
OMAiCGTHEAV.
OrthoDBiEOG092C5WBL.

Enzyme and pathway databases

BioCyciYEAST:G3O-29477-MONOMER.
ReactomeiR-SCE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SCE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SCE-72689. Formation of a pool of free 40S subunits.
R-SCE-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-SCE-72702. Ribosomal scanning and start codon recognition.
R-SCE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SCE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SCE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

EvolutionaryTraceiP41058.
PROiP41058.

Family and domain databases

InterProiIPR001209. Ribosomal_S14.
IPR018271. Ribosomal_S14_CS.
[Graphical view]
PfamiPF00253. Ribosomal_S14. 1 hit.
[Graphical view]
PROSITEiPS00527. RIBOSOMAL_S14. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS29B_YEAST
AccessioniPrimary (citable) accession number: P41058
Secondary accession number(s): A2TBP5, D6VRT5, P05761
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 130 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 5410 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for S29 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome IV
    Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.