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Protein

40S ribosomal protein S29-B

Gene

RPS29B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.1 Publication

Miscellaneous

Present with 5410 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for uS14 in yeast.Curated

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi21ZincSequence analysis1
Metal bindingi24ZincSequence analysis1
Metal bindingi39ZincSequence analysis1
Metal bindingi42ZincSequence analysis1

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD
  • zinc ion binding Source: GO_Central

GO - Biological processi

  • cytoplasmic translation Source: SGD

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-29477-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S29-B1 Publication
Alternative name(s):
S36
Small ribosomal subunit protein uS14-B1 Publication
YS29
Gene namesi
Name:RPS29B1 Publication
Synonyms:RPS36B, YS29B
Ordered Locus Names:YDL061C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome IV

Organism-specific databases

EuPathDBiFungiDB:YDL061C
SGDiS000002219 RPS29B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001310332 – 5640S ribosomal protein S29-BAdd BLAST55

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei25PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP41058
PaxDbiP41058
PRIDEiP41058

PTM databases

CarbonylDBiP41058
iPTMnetiP41058

Interactioni

Subunit structurei

Component of the small ribosomal subunit (SSU). Mature yeast ribosomes consist of a small (40S) and a large (60S) subunit. The 40S small subunit contains 1 molecule of ribosomal RNA (18S rRNA) and 33 different proteins (encoded by 57 genes). The large 60S subunit contains 3 rRNA molecules (25S, 5.8S and 5S rRNA) and 46 different proteins (encoded by 81 genes) (PubMed:9559554, PubMed:22096102).1 Publication1 Publication

Protein-protein interaction databases

BioGridi31997, 193 interactors
DIPiDIP-5230N
IntActiP41058, 8 interactors
STRINGi4932.YDL061C

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K5Xmodel-N21-49[»]
4V4Belectron microscopy11.70AN21-56[»]
4V92electron microscopy3.70d5-56[»]
ProteinModelPortaliP41058
SMRiP41058
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP41058

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

GeneTreeiENSGT00390000005814
HOGENOMiHOG000231300
InParanoidiP41058
KOiK02980
OMAiLIWKYGL
OrthoDBiEOG092C5WBL

Family and domain databases

InterProiView protein in InterPro
IPR001209 Ribosomal_S14
IPR018271 Ribosomal_S14_CS
PfamiView protein in Pfam
PF00253 Ribosomal_S14, 1 hit
PROSITEiView protein in PROSITE
PS00527 RIBOSOMAL_S14, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P41058-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHENVWFSH PRRFGKGSRQ CRVCSSHTGL VRKYDLNICR QCFREKANDI

GFHKYR
Length:56
Mass (Da):6,728
Last modified:January 23, 2007 - v3
Checksum:iF1AAE8CCE0E62552
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti7W → G AA sequence (PubMed:18782943).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D14677 Genomic DNA Translation: BAA03508.1
Z74109 Genomic DNA Translation: CAA98624.1
EF123148 mRNA Translation: ABM97492.1
BK006938 Genomic DNA Translation: DAA11795.1
PIRiS48504
RefSeqiNP_010222.1, NM_001180120.1

Genome annotation databases

EnsemblFungiiYDL061C; YDL061C; YDL061C
GeneIDi851498
KEGGisce:YDL061C

Similar proteinsi

Entry informationi

Entry nameiRS29B_YEAST
AccessioniPrimary (citable) accession number: P41058
Secondary accession number(s): A2TBP5, D6VRT5, P05761
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: March 28, 2018
This is version 142 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health