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Protein

Uncharacterized protein YbiI

Gene

ybiI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri39 – 6325dksA C4-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciEcoCyc:EG12421-MONOMER.
ECOL316407:JW0788-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbiI
Gene namesi
Name:ybiI
Ordered Locus Names:b0803, JW0788
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12421. ybiI.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8888Uncharacterized protein YbiIPRO_0000187551Add
BLAST

Proteomic databases

PaxDbiP41039.

Interactioni

Protein-protein interaction databases

BioGridi4259954. 15 interactions.
IntActiP41039. 13 interactions.
STRINGi511145.b0803.

Structurei

Secondary structure

1
88
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64Combined sources
Helixi9 – 157Combined sources
Helixi18 – 269Combined sources
Beta strandi32 – 343Combined sources
Turni40 – 423Combined sources
Helixi48 – 536Combined sources
Helixi61 – 7010Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KGONMR-A1-88[»]
ProteinModelPortaliP41039.
SMRiP41039. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP41039.

Family & Domainsi

Sequence similaritiesi

Contains 1 dksA C4-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri39 – 6325dksA C4-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG4105KSC. Bacteria.
COG1734. LUCA.
HOGENOMiHOG000141757.
InParanoidiP41039.
OMAiTHCEECE.
OrthoDBiEOG6F81VH.
PhylomeDBiP41039.

Family and domain databases

InterProiIPR020460. Znf_C4-type_bac.
IPR000962. Znf_DskA_TraR.
IPR020458. Znf_DskA_TraR_CS.
[Graphical view]
PfamiPF01258. zf-dskA_traR. 1 hit.
[Graphical view]
PRINTSiPR00618. DKSAZNFINGER.
PROSITEiPS01102. ZF_DKSA_1. 1 hit.
PS51128. ZF_DKSA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P41039-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASGWANDDA VNEQINSTIE DAIARARGEI PRGESLDECE ECGAPIPQAR
60 70 80
REAIPGVRLC IHCQQEKDLQ KPAYTGYNRR GSKDSQLR
Length:88
Mass (Da):9,756
Last modified:February 1, 1995 - v1
Checksum:iB8BF3F51C1BAF060
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73890.1.
AP009048 Genomic DNA. Translation: BAA35469.1.
PIRiC64817.
RefSeqiNP_415324.1. NC_000913.3.
WP_000146343.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73890; AAC73890; b0803.
BAA35469; BAA35469; BAA35469.
GeneIDi945434.
KEGGiecj:JW0788.
eco:b0803.
PATRICi32116809. VBIEscCol129921_0830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73890.1.
AP009048 Genomic DNA. Translation: BAA35469.1.
PIRiC64817.
RefSeqiNP_415324.1. NC_000913.3.
WP_000146343.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KGONMR-A1-88[»]
ProteinModelPortaliP41039.
SMRiP41039. Positions 1-88.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259954. 15 interactions.
IntActiP41039. 13 interactions.
STRINGi511145.b0803.

Proteomic databases

PaxDbiP41039.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73890; AAC73890; b0803.
BAA35469; BAA35469; BAA35469.
GeneIDi945434.
KEGGiecj:JW0788.
eco:b0803.
PATRICi32116809. VBIEscCol129921_0830.

Organism-specific databases

EchoBASEiEB2320.
EcoGeneiEG12421. ybiI.

Phylogenomic databases

eggNOGiENOG4105KSC. Bacteria.
COG1734. LUCA.
HOGENOMiHOG000141757.
InParanoidiP41039.
OMAiTHCEECE.
OrthoDBiEOG6F81VH.
PhylomeDBiP41039.

Enzyme and pathway databases

BioCyciEcoCyc:EG12421-MONOMER.
ECOL316407:JW0788-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP41039.
PROiP41039.

Family and domain databases

InterProiIPR020460. Znf_C4-type_bac.
IPR000962. Znf_DskA_TraR.
IPR020458. Znf_DskA_TraR_CS.
[Graphical view]
PfamiPF01258. zf-dskA_traR. 1 hit.
[Graphical view]
PRINTSiPR00618. DKSAZNFINGER.
PROSITEiPS01102. ZF_DKSA_1. 1 hit.
PS51128. ZF_DKSA_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of the rhlE gene of Escherichia coli."
    Ohmori H.
    Jpn. J. Genet. 69:1-12(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBII_ECOLI
AccessioniPrimary (citable) accession number: P41039
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: January 20, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.