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P40890

- VTH2_YEAST

UniProt

P40890 - VTH2_YEAST

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Protein

VPS10 homolog 2

Gene
VTH2, YJL222W, HRC1549, J0213
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.2 Publications

GO - Molecular functioni

  1. nucleotide binding Source: UniProtKB-KW
  2. signal sequence binding Source: SGD

GO - Biological processi

  1. Golgi to vacuole transport Source: SGD
  2. protein targeting to vacuole Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Receptor

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

Nucleotide-binding

Enzyme and pathway databases

BioCyciYEAST:G3O-31644-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
VPS10 homolog 2
Alternative name(s):
Sortilin VTH2
Gene namesi
Name:VTH2
Ordered Locus Names:YJL222W
ORF Names:HRC1549, J0213
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome X

Organism-specific databases

CYGDiYJL222w.
SGDiS000003758. VTH2.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini22 – 13691348Lumenal Reviewed predictionAdd
BLAST
Transmembranei1370 – 139021Helical; Reviewed predictionAdd
BLAST
Topological domaini1391 – 1549159Cytoplasmic Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. Golgi apparatus Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 Reviewed predictionAdd
BLAST
Chaini22 – 15491528VPS10 homolog 2PRO_0000014331Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi479 – 4791N-linked (GlcNAc...) Reviewed prediction
Glycosylationi769 – 7691N-linked (GlcNAc...) Reviewed prediction
Glycosylationi986 – 9861N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiP40890.
PaxDbiP40890.

Expressioni

Gene expression databases

GenevestigatoriP40890.

Interactioni

Protein-protein interaction databases

BioGridi33560. 12 interactions.
DIPiDIP-6665N.
IntActiP40890. 1 interaction.
MINTiMINT-636859.
STRINGi4932.YJL222W.

Structurei

3D structure databases

ProteinModelPortaliP40890.
SMRiP40890. Positions 898-1343.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati57 – 6812BNR 1Add
BLAST
Repeati101 – 11212BNR 2Add
BLAST
Repeati159 – 17012BNR 3Add
BLAST
Repeati228 – 23912BNR 4Add
BLAST
Repeati393 – 40412BNR 5Add
BLAST
Repeati465 – 47612BNR 6Add
BLAST
Repeati511 – 52212BNR 7Add
BLAST
Repeati740 – 75112BNR 8Add
BLAST
Repeati837 – 84812BNR 9Add
BLAST
Repeati1040 – 105112BNR 10Add
BLAST
Repeati1119 – 113012BNR 11Add
BLAST
Repeati1160 – 117112BNR 12Add
BLAST

Sequence similaritiesi

Contains 12 BNR repeats.

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG281049.
GeneTreeiENSGT00510000046443.
HOGENOMiHOG000169063.
OMAiCHERERV.
OrthoDBiEOG7DVDKD.

Family and domain databases

Gene3Di2.120.10.10. 2 hits.
InterProiIPR011040. Sialidases.
IPR006581. VPS10.
[Graphical view]
SMARTiSM00602. VPS10. 2 hits.
[Graphical view]
SUPFAMiSSF50939. SSF50939. 3 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P40890-1 [UniParc]FASTAAdd to Basket

« Hide

MALFRALYII WVFLLIPLSN AEEFTPKVTR TLSRYVFDIV NFDDSNTLIR     50
AEEDSVEISF DAGENWKTID EIEEPIESFV VDPFRGHDRA FAFVKTAPKF 100
YVTDDQGKSW RPLTIPISEK ASNYFCDVTT HPIKKKHLII RCDLLTIKNS 150
GLMYVGREIY TTNDGVSFSQ VKPSFGKIDG HISTARCDFI KSSEDSDLGG 200
NDASILCLFR NTEYIESTGS TIDKSELILS ADGGETFKEL VQFKDKVVSR 250
YEILKHHVIV LTQDDMYNEM SSTNIWISND VSTFQVARTP TKIRHVNMGQ 300
IHEDSIGRIV LPVSRERDDE DSNQPGAAEV LISDSEGLKF LPINWIPNNQ 350
FGYINVAYPG FLKGTFFGSF HPFIEYSDRK RKYSRQKVRE ETKVSVDNGL 400
TWTNLKVVDR ENVDLFGCDV TKPERCSLQT HFYDLRNLNP SAGIMMISGI 450
VGDGSAYNWK EEKTFISRDS GLTWRLVHNS TGLYTTGDLG NIIMYIPYRS 500
NENGDVPSKF YYSLDQGKTW GEYDLIMPIY PYRLVSTISD GSGSKFILTG 550
TSITEDPIFI TYSIDFSAVF DYKSCEEGDF EDWNLADGKC VNGAKYKYRR 600
RKQDAQCLVK KAFKDLSLDE TPCNSCTGSD YECSFEFVRD AKGDCIPDYN 650
LIALSDICDK SKGKSVLVKP LQLIKGDKCK TPMKIESVDI PCDEIPKEGS 700
SDKEIVTTEN KFDFEIKFYQ YFDTVADESL VMLNSIGDAY ISHDGGQTIK 750
RFDTDGEKIV EIVFNPYFNS SAYLFGSKGN IFLTHDRGYS FMIAKLPEAR 800
QLGMPLDFSA KAQDTFIYYG GKNCESILSP ECHAVAYLTK DGGETFTEML 850
DNAIHCEFAG TLFKYPSNDD MVMCQVKEKF SQTRSLVSST DFFQDDRKTV 900
FENIIGYLST GGYIIVAVPH EDNELRAYVT NDGAEFTEAK FPYDEDIGKQ 950
DAFTILGSEE GSIFLHLATN LESGHDFGNL LKSNSNGTSF VTLEHAVNRN 1000
TFGYVDFEKV QGLEGIIITN IVSNSEKVGE NKEDEQLKTK ITFNDGSDWN 1050
FLKPPKKDSE GKKFPCDSVS LDKCSLHLHG YTERKDIRDT YSSGSALGMM 1100
FGVGNVGDRL LPYEECSTFL TTDGGETWTE VKKGPHQWEY GDHGGVLVLV 1150
PENAETDSIS YSTDFGKTWK DYKFCGDKVL VKDIITVPRD SALRFLLFGE 1200
AKNMGSGSFR TYTIDFRNIF ERQCEFDITG RKRADFKYSP LGSRTGCLFG 1250
HKTEFLRKTD EKCFIGNIPL SEFSRNVKNC PCTRQDFECD YNFYKASDGT 1300
CKLVKGLSSA NGADICKKEP DLIEYYDSSG YRKIPLSTCK GGLKLDAHLA 1350
PHPCPGKEKA FREKYSINTG AYALVFVTIL LVIFFVAWFV YDRGIRRNGG 1400
FSRFEEIRLG DDGLIENNRT DRVVNIIVRL GLCISLITKS AFQRAKAGTA 1450
QLSSKFRARF GNKKGATYSS LLHDQLSDEP DGFHEDSNDL SSFRGQGSNS 1500
EIEQEDVDTS QQEHTSRTDL LGASNIPDAL PARSASHESD LAAARSEDK 1549
Length:1,549
Mass (Da):174,402
Last modified:February 1, 1995 - v1
Checksum:iB260CF7C927B4E4F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z34098 Genomic DNA. Translation: CAA83988.1.
Z49497 Genomic DNA. Translation: CAA89519.1.
BK006943 Genomic DNA. Translation: DAA08591.1.
PIRiS50705.
RefSeqiNP_012313.1. NM_001181655.1.

Genome annotation databases

EnsemblFungiiYJL222W; YJL222W; YJL222W.
GeneIDi853233.
KEGGisce:YJL222W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z34098 Genomic DNA. Translation: CAA83988.1 .
Z49497 Genomic DNA. Translation: CAA89519.1 .
BK006943 Genomic DNA. Translation: DAA08591.1 .
PIRi S50705.
RefSeqi NP_012313.1. NM_001181655.1.

3D structure databases

ProteinModelPortali P40890.
SMRi P40890. Positions 898-1343.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 33560. 12 interactions.
DIPi DIP-6665N.
IntActi P40890. 1 interaction.
MINTi MINT-636859.
STRINGi 4932.YJL222W.

Proteomic databases

MaxQBi P40890.
PaxDbi P40890.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YJL222W ; YJL222W ; YJL222W .
GeneIDi 853233.
KEGGi sce:YJL222W.

Organism-specific databases

CYGDi YJL222w.
SGDi S000003758. VTH2.

Phylogenomic databases

eggNOGi NOG281049.
GeneTreei ENSGT00510000046443.
HOGENOMi HOG000169063.
OMAi CHERERV.
OrthoDBi EOG7DVDKD.

Enzyme and pathway databases

BioCyci YEAST:G3O-31644-MONOMER.

Miscellaneous databases

NextBioi 973452.

Gene expression databases

Genevestigatori P40890.

Family and domain databases

Gene3Di 2.120.10.10. 2 hits.
InterProi IPR011040. Sialidases.
IPR006581. VPS10.
[Graphical view ]
SMARTi SM00602. VPS10. 2 hits.
[Graphical view ]
SUPFAMi SSF50939. SSF50939. 3 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of a 40.2 kb DNA fragment located near the left telomere of yeast chromosome X."
    Vandenbol M., Durand P., Bolle P.-A., Dion C., Portetelle D., Hilger F.
    Yeast 10:1657-1662(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
    Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K.
    , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
    EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: FUNCTION.
  5. "Vps10p cycles between the late-Golgi and prevacuolar compartments in its function as the sorting receptor for multiple yeast vacuolar hydrolases."
    Cooper A.A., Stevens T.H.
    J. Cell Biol. 133:529-541(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiVTH2_YEAST
AccessioniPrimary (citable) accession number: P40890
Secondary accession number(s): D6VVX5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: June 11, 2014
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 279 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome X
    Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

External Data

Dasty 3

Similar proteinsi