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P40628 (HMGH_IIV6) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
High mobility group protein homolog
Gene names
Name:EF1
Ordered Locus Names:401R
OrganismInvertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus) [Reference proteome]
Taxonomic identifier176652 [NCBI]
Taxonomic lineageVirusesdsDNA viruses, no RNA stageIridoviridaeIridovirus
Virus hostAcheta domesticus (House cricket) [TaxID: 6997]
Chilo suppressalis (striped riceborer) [TaxID: 168631]
Gryllus bimaculatus (Two-spotted cricket) [TaxID: 6999]
Gryllus campestris [TaxID: 58607]
Spodoptera frugiperda (Fall armyworm) [TaxID: 7108]

Protein attributes

Sequence length242 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Host nucleus Potential.

Sequence similarities

Contains 2 HMG box DNA-binding domains.

Ontologies

Keywords
   Cellular componentHost nucleus
   DomainRepeat
   LigandDNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componenthost cell nucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 242242High mobility group protein homolog
PRO_0000048594

Regions

DNA binding54 – 12269HMG box 1
DNA binding126 – 19772HMG box 2

Experimental info

Sequence conflict1321G → A in AAK82261. Ref.2
Sequence conflict142 – 1432KI → QGL in AAK82261. Ref.2
Sequence conflict215 – 24228SICSS…KEIKV → LVFVLAM in AAA17843. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P40628 [UniParc].

Last modified December 14, 2011. Version 2.
Checksum: EE2343DA27F92282

FASTA24228,182
        10         20         30         40         50         60 
MKSKKELMDA LNKLVITEIC SIFPDIQRVW EDQEFQKKFA STIGVKPKDV TNVPKRNKSS 

        70         80         90        100        110        120 
YLFFCQEIRP SIVAEMPDIK PNQVMVHLGK KWSELPLEDR KKYDVMAVED RKRYLASKEA 

       130        140        150        160        170        180 
NKKLNKPVKI SGYLQFCADE RKIKLKFPDL TTKDITAKLG GMWNDYKKNN PQYLKSKYGY 

       190        200        210        220        230        240 
EIVEQHYDYE KNEIDKENII PSSHRRKMVP SIPVSICSSN VKAIQELIGT TKSSKKNKEI 


KV 

« Hide

References

« Hide 'large scale' references
[1]"Identification of genes encoding zinc finger proteins, non-histone chromosomal HMG protein homologue, and a putative GTP phosphohydrolase in the genome of Chilo iridescent virus."
Schnitzler P., Hug M., Handermann M., Janssen W., Koonin E.V., Delius H., Darai C.
Nucleic Acids Res. 22:158-166(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus."
Jakob N.J., Mueller K., Bahr U., Darai G.
Virology 286:182-196(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
L22300 Unassigned DNA. Translation: AAA17843.1.
AF303741 Genomic DNA. Translation: AAK82261.1.
PIRS71905.
RefSeqNP_149864.1. NC_003038.1.

3D structure databases

ProteinModelPortalP40628.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1733017.

Family and domain databases

Gene3D1.10.30.10. 2 hits.
InterProIPR009071. HMG_box_dom.
[Graphical view]
PfamPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTSM00398. HMG. 2 hits.
[Graphical view]
SUPFAMSSF47095. SSF47095. 2 hits.
PROSITEPS50118. HMG_BOX_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameHMGH_IIV6
AccessionPrimary (citable) accession number: P40628
Secondary accession number(s): Q91FC4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 14, 2011
Last modified: June 11, 2014
This is version 68 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families