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P40628

- HMGH_IIV6

UniProt

P40628 - HMGH_IIV6

Protein

High mobility group protein homolog

Gene

EF1

Organism
Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 69 (01 Oct 2014)
      Sequence version 2 (14 Dec 2011)
      Previous versions | rss
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    Functioni

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi54 – 12269HMG box 1PROSITE-ProRule annotationAdd
    BLAST
    DNA bindingi126 – 19772HMG box 2PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW

    Keywords - Ligandi

    DNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    High mobility group protein homolog
    Gene namesi
    Name:EF1
    Ordered Locus Names:401R
    OrganismiInvertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
    Taxonomic identifieri176652 [NCBI]
    Taxonomic lineageiVirusesdsDNA viruses, no RNA stageIridoviridaeIridovirus
    Virus hostiAcheta domesticus (House cricket) [TaxID: 6997]
    Chilo suppressalis (striped riceborer) [TaxID: 168631]
    Gryllus bimaculatus (Two-spotted cricket) [TaxID: 6999]
    Gryllus campestris [TaxID: 58607]
    Spodoptera frugiperda (Fall armyworm) [TaxID: 7108]
    ProteomesiUP000001359: Genome

    Subcellular locationi

    Host nucleus Curated

    GO - Cellular componenti

    1. host cell nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 242242High mobility group protein homologPRO_0000048594Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliP40628.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 2 HMG box DNA-binding domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Family and domain databases

    Gene3Di1.10.30.10. 2 hits.
    InterProiIPR009071. HMG_box_dom.
    [Graphical view]
    PfamiPF00505. HMG_box. 1 hit.
    [Graphical view]
    SMARTiSM00398. HMG. 2 hits.
    [Graphical view]
    SUPFAMiSSF47095. SSF47095. 2 hits.
    PROSITEiPS50118. HMG_BOX_2. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P40628-1 [UniParc]FASTAAdd to Basket

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    MKSKKELMDA LNKLVITEIC SIFPDIQRVW EDQEFQKKFA STIGVKPKDV    50
    TNVPKRNKSS YLFFCQEIRP SIVAEMPDIK PNQVMVHLGK KWSELPLEDR 100
    KKYDVMAVED RKRYLASKEA NKKLNKPVKI SGYLQFCADE RKIKLKFPDL 150
    TTKDITAKLG GMWNDYKKNN PQYLKSKYGY EIVEQHYDYE KNEIDKENII 200
    PSSHRRKMVP SIPVSICSSN VKAIQELIGT TKSSKKNKEI KV 242
    Length:242
    Mass (Da):28,182
    Last modified:December 14, 2011 - v2
    Checksum:iEE2343DA27F92282
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti132 – 1321G → A in AAK82261. (PubMed:11448171)Curated
    Sequence conflicti142 – 1432KI → QGL in AAK82261. (PubMed:11448171)Curated
    Sequence conflicti215 – 24228SICSS…KEIKV → LVFVLAM in AAA17843. (PubMed:8121799)CuratedAdd
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L22300 Unassigned DNA. Translation: AAA17843.1.
    AF303741 Genomic DNA. Translation: AAK82261.1.
    PIRiS71905.
    RefSeqiNP_149864.1. NC_003038.1.

    Genome annotation databases

    GeneIDi1733017.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L22300 Unassigned DNA. Translation: AAA17843.1 .
    AF303741 Genomic DNA. Translation: AAK82261.1 .
    PIRi S71905.
    RefSeqi NP_149864.1. NC_003038.1.

    3D structure databases

    ProteinModelPortali P40628.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1733017.

    Family and domain databases

    Gene3Di 1.10.30.10. 2 hits.
    InterProi IPR009071. HMG_box_dom.
    [Graphical view ]
    Pfami PF00505. HMG_box. 1 hit.
    [Graphical view ]
    SMARTi SM00398. HMG. 2 hits.
    [Graphical view ]
    SUPFAMi SSF47095. SSF47095. 2 hits.
    PROSITEi PS50118. HMG_BOX_2. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification of genes encoding zinc finger proteins, non-histone chromosomal HMG protein homologue, and a putative GTP phosphohydrolase in the genome of Chilo iridescent virus."
      Schnitzler P., Hug M., Handermann M., Janssen W., Koonin E.V., Delius H., Darai C.
      Nucleic Acids Res. 22:158-166(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus."
      Jakob N.J., Mueller K., Bahr U., Darai G.
      Virology 286:182-196(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiHMGH_IIV6
    AccessioniPrimary (citable) accession number: P40628
    Secondary accession number(s): Q91FC4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: December 14, 2011
    Last modified: October 1, 2014
    This is version 69 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3