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Protein

High mobility group protein homolog

Gene

EF1

Organism
Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi54 – 12269HMG box 1PROSITE-ProRule annotationAdd
BLAST
DNA bindingi126 – 19772HMG box 2PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
High mobility group protein homolog
Gene namesi
Name:EF1
Ordered Locus Names:401R
OrganismiInvertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Taxonomic identifieri176652 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageIridoviridaeIridovirus
Virus hostiAcheta domesticus (House cricket) [TaxID: 6997]
Chilo suppressalis (striped riceborer) [TaxID: 168631]
Gryllus bimaculatus (Two-spotted cricket) [TaxID: 6999]
Gryllus campestris [TaxID: 58607]
Spodoptera frugiperda (Fall armyworm) [TaxID: 7108]
ProteomesiUP000001359: Genome

Subcellular locationi

Host nucleus Curated

GO - Cellular componenti

  1. host cell nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Host nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 242242High mobility group protein homologPRO_0000048594Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP40628.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 2 HMG box DNA-binding domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Family and domain databases

Gene3Di1.10.30.10. 2 hits.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 2 hits.
PROSITEiPS50118. HMG_BOX_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P40628-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKSKKELMDA LNKLVITEIC SIFPDIQRVW EDQEFQKKFA STIGVKPKDV
60 70 80 90 100
TNVPKRNKSS YLFFCQEIRP SIVAEMPDIK PNQVMVHLGK KWSELPLEDR
110 120 130 140 150
KKYDVMAVED RKRYLASKEA NKKLNKPVKI SGYLQFCADE RKIKLKFPDL
160 170 180 190 200
TTKDITAKLG GMWNDYKKNN PQYLKSKYGY EIVEQHYDYE KNEIDKENII
210 220 230 240
PSSHRRKMVP SIPVSICSSN VKAIQELIGT TKSSKKNKEI KV
Length:242
Mass (Da):28,182
Last modified:December 14, 2011 - v2
Checksum:iEE2343DA27F92282
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti132 – 1321G → A in AAK82261. (PubMed:11448171)Curated
Sequence conflicti142 – 1432KI → QGL in AAK82261. (PubMed:11448171)Curated
Sequence conflicti215 – 24228SICSS…KEIKV → LVFVLAM in AAA17843. (PubMed:8121799)CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L22300 Unassigned DNA. Translation: AAA17843.1.
AF303741 Genomic DNA. Translation: AAK82261.1.
PIRiS71905.
RefSeqiNP_149864.1. NC_003038.1.

Genome annotation databases

GeneIDi1733017.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L22300 Unassigned DNA. Translation: AAA17843.1.
AF303741 Genomic DNA. Translation: AAK82261.1.
PIRiS71905.
RefSeqiNP_149864.1. NC_003038.1.

3D structure databases

ProteinModelPortaliP40628.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1733017.

Family and domain databases

Gene3Di1.10.30.10. 2 hits.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 2 hits.
PROSITEiPS50118. HMG_BOX_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of genes encoding zinc finger proteins, non-histone chromosomal HMG protein homologue, and a putative GTP phosphohydrolase in the genome of Chilo iridescent virus."
    Schnitzler P., Hug M., Handermann M., Janssen W., Koonin E.V., Delius H., Darai C.
    Nucleic Acids Res. 22:158-166(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus."
    Jakob N.J., Mueller K., Bahr U., Darai G.
    Virology 286:182-196(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiHMGH_IIV6
AccessioniPrimary (citable) accession number: P40628
Secondary accession number(s): Q91FC4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 14, 2011
Last modified: January 7, 2015
This is version 71 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.