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P40628

- HMGH_IIV6

UniProt

P40628 - HMGH_IIV6

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Protein

High mobility group protein homolog

Gene
EF1, 401R
Organism
Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Status
Reviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi54 – 12269HMG box 1Add
BLAST
DNA bindingi126 – 19772HMG box 2Add
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
High mobility group protein homolog
Gene namesi
Name:EF1
Ordered Locus Names:401R
OrganismiInvertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Taxonomic identifieri176652 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageIridoviridaeIridovirus
Virus hostiAcheta domesticus (House cricket) [TaxID: 6997]
Chilo suppressalis (striped riceborer) [TaxID: 168631]
Gryllus bimaculatus (Two-spotted cricket) [TaxID: 6999]
Gryllus campestris [TaxID: 58607]
Spodoptera frugiperda (Fall armyworm) [TaxID: 7108]
ProteomesiUP000001359: Genome

Subcellular locationi

Host nucleus Reviewed prediction

GO - Cellular componenti

  1. host cell nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Host nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 242242High mobility group protein homologPRO_0000048594Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP40628.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Repeat

Family and domain databases

Gene3Di1.10.30.10. 2 hits.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 2 hits.
PROSITEiPS50118. HMG_BOX_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P40628-1 [UniParc]FASTAAdd to Basket

« Hide

MKSKKELMDA LNKLVITEIC SIFPDIQRVW EDQEFQKKFA STIGVKPKDV    50
TNVPKRNKSS YLFFCQEIRP SIVAEMPDIK PNQVMVHLGK KWSELPLEDR 100
KKYDVMAVED RKRYLASKEA NKKLNKPVKI SGYLQFCADE RKIKLKFPDL 150
TTKDITAKLG GMWNDYKKNN PQYLKSKYGY EIVEQHYDYE KNEIDKENII 200
PSSHRRKMVP SIPVSICSSN VKAIQELIGT TKSSKKNKEI KV 242
Length:242
Mass (Da):28,182
Last modified:December 14, 2011 - v2
Checksum:iEE2343DA27F92282
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti132 – 1321G → A in AAK82261. 1 Publication
Sequence conflicti142 – 1432KI → QGL in AAK82261. 1 Publication
Sequence conflicti215 – 24228SICSS…KEIKV → LVFVLAM in AAA17843. 1 PublicationAdd
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L22300 Unassigned DNA. Translation: AAA17843.1.
AF303741 Genomic DNA. Translation: AAK82261.1.
PIRiS71905.
RefSeqiNP_149864.1. NC_003038.1.

Genome annotation databases

GeneIDi1733017.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L22300 Unassigned DNA. Translation: AAA17843.1 .
AF303741 Genomic DNA. Translation: AAK82261.1 .
PIRi S71905.
RefSeqi NP_149864.1. NC_003038.1.

3D structure databases

ProteinModelPortali P40628.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1733017.

Family and domain databases

Gene3Di 1.10.30.10. 2 hits.
InterProi IPR009071. HMG_box_dom.
[Graphical view ]
Pfami PF00505. HMG_box. 1 hit.
[Graphical view ]
SMARTi SM00398. HMG. 2 hits.
[Graphical view ]
SUPFAMi SSF47095. SSF47095. 2 hits.
PROSITEi PS50118. HMG_BOX_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of genes encoding zinc finger proteins, non-histone chromosomal HMG protein homologue, and a putative GTP phosphohydrolase in the genome of Chilo iridescent virus."
    Schnitzler P., Hug M., Handermann M., Janssen W., Koonin E.V., Delius H., Darai C.
    Nucleic Acids Res. 22:158-166(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus."
    Jakob N.J., Mueller K., Bahr U., Darai G.
    Virology 286:182-196(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiHMGH_IIV6
AccessioniPrimary (citable) accession number: P40628
Secondary accession number(s): Q91FC4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 14, 2011
Last modified: June 11, 2014
This is version 68 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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