ID ATM1_YEAST Reviewed; 690 AA. AC P40416; D6W0C8; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-FEB-1996, sequence version 2. DT 24-JAN-2024, entry version 203. DE RecName: Full=Iron-sulfur clusters transporter ATM1, mitochondrial {ECO:0000305}; DE EC=7.-.-.- {ECO:0000269|PubMed:25006243}; DE Flags: Precursor; GN Name=ATM1 {ECO:0000312|SGD:S000004916}; Synonyms=MDY {ECO:0000305}; GN OrderedLocusNames=YMR301C; ORFNames=YM9952.03C; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], SUBCELLULAR LOCATION, AND TOPOLOGY. RC STRAIN=JK9-3D alpha; RX PubMed=7828591; DOI=10.1002/j.1460-2075.1995.tb06989.x; RA Leighton J., Schatz G.; RT "An ABC transporter in the mitochondrial inner membrane is required for RT normal growth of yeast."; RL EMBO J. 14:188-195(1995). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=9428742; DOI=10.1016/s0014-5793(97)01414-2; RA Kispal G., Csere P., Guiard B., Lill R.; RT "The ABC transporter Atm1p is required for mitochondrial iron RT homeostasis."; RL FEBS Lett. 418:346-350(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=9169872; RA Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., RA Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., RA Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P., RA Skelton J., Walsh S.V., Whitehead S., Barrell B.G.; RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII."; RL Nature 387:90-93(1997). RN [4] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [5] RP FUNCTION. RX PubMed=10406803; DOI=10.1093/emboj/18.14.3981; RA Kispal G., Csere P., Prohl C., Lill R.; RT "The mitochondrial proteins Atm1p and Nfs1p are essential for biogenesis of RT cytosolic Fe/S proteins."; RL EMBO J. 18:3981-3989(1999). RN [6] RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. RX PubMed=14562106; DOI=10.1038/nature02046; RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., RA O'Shea E.K., Weissman J.S.; RT "Global analysis of protein expression in yeast."; RL Nature 425:737-741(2003). RN [7] RP HOMODIMERIZATION, AND MUTAGENESIS OF LYS-475 AND GLU-598. RX PubMed=15225610; DOI=10.1016/j.febslet.2004.05.051; RA Chloupkova M., Reaves S.K., LeBard L.M., Koeller D.M.; RT "The mitochondrial ABC transporter Atm1p functions as a homodimer."; RL FEBS Lett. 569:65-69(2004). RN [8] RP FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, SUBCELLULAR RP LOCATION, TOPOLOGY, AND MUTAGENESIS OF ARG-216 AND LYS-475. RX PubMed=25006243; DOI=10.1074/jbc.m114.553438; RA Schaedler T.A., Thornton J.D., Kruse I., Schwarzlaender M., Meyer A.J., RA van Veen H.W., Balk J.; RT "A conserved mitochondrial ATP-binding cassette transporter exports RT glutathione polysulfide for cytosolic metal cofactor assembly."; RL J. Biol. Chem. 289:23264-23274(2014). RN [9] RP FUNCTION, AND DISRUPTION PHENOTYPE. RX PubMed=31040179; DOI=10.1074/jbc.ra119.008600; RA Pandey A.K., Pain J., Dancis A., Pain D.; RT "Mitochondria export iron-sulfur and sulfur intermediates to the cytoplasm RT for iron-sulfur cluster assembly and tRNA thiolation in yeast."; RL J. Biol. Chem. 294:9489-9502(2019). RN [10] RP X-RAY CRYSTALLOGRAPHY (3.06 ANGSTROMS) OF 98-690 IN COMPLEX WITH RP GLUTATHIONE, FUNCTION, SUBCELLULAR LOCATION, TOPOLOGY, SUBUNIT, AND RP MUTAGENESIS OF 666-LEU--LEU-690. RX PubMed=24604199; DOI=10.1126/science.1246729; RA Srinivasan V., Pierik A.J., Lill R.; RT "Crystal structures of nucleotide-free and glutathione-bound mitochondrial RT ABC transporter Atm1."; RL Science 343:1137-1140(2014). CC -!- FUNCTION: Performs an essential function in the generation of CC cytoplasmic iron-sulfur proteins by mediating the ATP-dependent export CC of Fe/S cluster precursors synthesized by NFS1 and other mitochondrial CC proteins (PubMed:10406803, PubMed:31040179, PubMed:25006243). CC Hydrolyzes ATP (PubMed:25006243, PubMed:24604199). Binds glutathione CC and may function by transporting a glutathione-conjugated iron-sulfur CC compound (PubMed:24604199, PubMed:25006243, PubMed:31040179). CC {ECO:0000269|PubMed:10406803, ECO:0000269|PubMed:24604199, CC ECO:0000269|PubMed:25006243, ECO:0000269|PubMed:31040179}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=109 uM for glutathione disulfide {ECO:0000269|PubMed:25006243}; CC Vmax=27.4 pmol/min/mg enzyme {ECO:0000269|PubMed:25006243}; CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:24604199}. CC -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane CC {ECO:0000269|PubMed:24604199, ECO:0000269|PubMed:7828591}; Multi-pass CC membrane protein {ECO:0000255|PROSITE-ProRule:PRU00441, CC ECO:0000269|PubMed:24604199, ECO:0000269|PubMed:25006243, CC ECO:0000269|PubMed:7828591}. CC -!- DISRUPTION PHENOTYPE: Impairs cytosolic iron-sulfur (Fe-S) cluster CC assembly and decreases cytosolic tRNA thiolation. CC {ECO:0000269|PubMed:31040179}. CC -!- MISCELLANEOUS: Present with 3250 molecules/cell in log phase SD medium. CC {ECO:0000269|PubMed:14562106}. CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. ABCB family. CC Heavy Metal importer (TC 3.A.1.210) subfamily. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; X82612; CAA57938.1; -; Genomic_DNA. DR EMBL; X81715; CAA57359.1; -; Genomic_DNA. DR EMBL; Z49212; CAA89134.1; -; Genomic_DNA. DR EMBL; BK006946; DAA10202.1; -; Genomic_DNA. DR PIR; S54211; S54211. DR RefSeq; NP_014030.1; NM_001182810.1. DR PDB; 4MYC; X-ray; 3.06 A; A/B/C=98-690. DR PDB; 4MYH; X-ray; 3.38 A; A/B/C=98-690. DR PDB; 7PSL; EM; 3.30 A; A/B=92-690. DR PDB; 7PSM; EM; 3.40 A; A/B=92-690. DR PDB; 7PSN; EM; 2.90 A; A/B=92-690. DR PDBsum; 4MYC; -. DR PDBsum; 4MYH; -. DR PDBsum; 7PSL; -. DR PDBsum; 7PSM; -. DR PDBsum; 7PSN; -. DR AlphaFoldDB; P40416; -. DR EMDB; EMD-13613; -. DR EMDB; EMD-13614; -. DR EMDB; EMD-13615; -. DR SMR; P40416; -. DR BioGRID; 35481; 100. DR DIP; DIP-7617N; -. DR IntAct; P40416; 8. DR MINT; P40416; -. DR STRING; 4932.YMR301C; -. DR TCDB; 3.A.1.210.1; the atp-binding cassette (abc) superfamily. DR iPTMnet; P40416; -. DR MaxQB; P40416; -. DR PaxDb; 4932-YMR301C; -. DR PeptideAtlas; P40416; -. DR EnsemblFungi; YMR301C_mRNA; YMR301C; YMR301C. DR GeneID; 855347; -. DR KEGG; sce:YMR301C; -. DR AGR; SGD:S000004916; -. DR SGD; S000004916; ATM1. DR VEuPathDB; FungiDB:YMR301C; -. DR eggNOG; KOG0057; Eukaryota. DR GeneTree; ENSGT00940000156281; -. DR HOGENOM; CLU_000604_84_1_1; -. DR InParanoid; P40416; -. DR OMA; VFHIIPI; -. DR OrthoDB; 2876209at2759; -. DR BioCyc; YEAST:G3O-32967-MONOMER; -. DR Reactome; R-SCE-1369007; Mitochondrial ABC transporters. DR BioGRID-ORCS; 855347; 8 hits in 10 CRISPR screens. DR PRO; PR:P40416; -. DR Proteomes; UP000002311; Chromosome XIII. DR RNAct; P40416; Protein. DR GO; GO:0005743; C:mitochondrial inner membrane; IDA:SGD. DR GO; GO:0005739; C:mitochondrion; HDA:SGD. DR GO; GO:0140359; F:ABC-type transporter activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATP hydrolysis activity; IDA:UniProtKB. DR GO; GO:0042626; F:ATPase-coupled transmembrane transporter activity; IDA:SGD. DR GO; GO:0006879; P:intracellular iron ion homeostasis; IBA:GO_Central. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IMP:UniProtKB. DR GO; GO:0140466; P:iron-sulfur cluster export from the mitochondrion; IMP:UniProtKB. DR GO; GO:1902497; P:iron-sulfur cluster transmembrane transport; IMP:UniProtKB. DR GO; GO:1990542; P:mitochondrial transmembrane transport; IDA:UniProtKB. DR GO; GO:0055085; P:transmembrane transport; IBA:GO_Central. DR CDD; cd18582; ABC_6TM_ATM1_ABCB7; 1. DR CDD; cd03253; ABCC_ATM1_transporter; 1. DR Gene3D; 1.20.1560.10; ABC transporter type 1, transmembrane domain; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR011527; ABC1_TM_dom. DR InterPro; IPR036640; ABC1_TM_sf. DR InterPro; IPR003439; ABC_transporter-like_ATP-bd. DR InterPro; IPR017871; ABC_transporter-like_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR039421; Type_1_exporter. DR PANTHER; PTHR24221; ATP-BINDING CASSETTE SUB-FAMILY B; 1. DR PANTHER; PTHR24221:SF402; IRON-SULFUR CLUSTERS TRANSPORTER ABCB7, MITOCHONDRIAL; 1. DR Pfam; PF00664; ABC_membrane; 1. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF90123; ABC transporter transmembrane region; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1. DR PROSITE; PS50929; ABC_TM1F; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 1: Evidence at protein level; KW 3D-structure; ATP-binding; Membrane; Mitochondrion; KW Mitochondrion inner membrane; Nucleotide-binding; Reference proteome; KW Transit peptide; Translocase; Transmembrane; Transmembrane helix; KW Transport. FT TRANSIT 1..26 FT /note="Mitochondrion" FT /evidence="ECO:0000255" FT CHAIN 27..690 FT /note="Iron-sulfur clusters transporter ATM1, FT mitochondrial" FT /id="PRO_0000000258" FT TOPO_DOM 27..110 FT /note="Mitochondrial matrix" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT TRANSMEM 111..132 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 133..155 FT /note="Mitochondrial intermembrane" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT TRANSMEM 156..179 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 180..228 FT /note="Mitochondrial matrix" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT TRANSMEM 229..252 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 253 FT /note="Mitochondrial intermembrane" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT TRANSMEM 254..274 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 275..340 FT /note="Mitochondrial matrix" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT TRANSMEM 341..359 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 360..374 FT /note="Mitochondrial intermembrane" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT TRANSMEM 375..396 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 397..690 FT /note="Mitochondrial matrix" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0000269|PubMed:25006243" FT DOMAIN 111..401 FT /note="ABC transmembrane type-1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00441" FT DOMAIN 436..672 FT /note="ABC transporter" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434" FT BINDING 280..284 FT /ligand="glutathione" FT /ligand_id="ChEBI:CHEBI:57925" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0007744|PDB:4MYH" FT BINDING 343..346 FT /ligand="glutathione" FT /ligand_id="ChEBI:CHEBI:57925" FT /evidence="ECO:0000269|PubMed:24604199, FT ECO:0007744|PDB:4MYH" FT BINDING 393 FT /ligand="glutathione" FT /ligand_id="ChEBI:CHEBI:57925" FT /evidence="ECO:0000250|UniProtKB:Q2G506" FT BINDING 445 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000250|UniProtKB:Q9NP58" FT BINDING 469..480 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434" FT MUTAGEN 216 FT /note="R->Q: Decreases ATP hydrolysis. Decreases FT transporter activity." FT /evidence="ECO:0000269|PubMed:25006243" FT MUTAGEN 475 FT /note="K->M: Loss of function; significant decrease in FT ATP-binding; no homodimerization." FT /evidence="ECO:0000269|PubMed:15225610" FT MUTAGEN 475 FT /note="Missing: Decreases ATP hydrolysis. Decreases FT transporter activity." FT /evidence="ECO:0000269|PubMed:25006243" FT MUTAGEN 598 FT /note="E->A: Loss of function; slight decrease in FT ATP-binding." FT /evidence="ECO:0000269|PubMed:15225610" FT MUTAGEN 666..690 FT /note="Missing: Impairs protein stability." FT /evidence="ECO:0000269|PubMed:24604199" FT CONFLICT 23 FT /note="I -> IRNHS (in Ref. 1; CAA57938)" FT /evidence="ECO:0000305" FT HELIX 94..99 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 105..139 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 146..148 FT /evidence="ECO:0007829|PDB:7PSM" FT HELIX 152..200 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 204..207 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 211..232 FT /evidence="ECO:0007829|PDB:7PSN" FT TURN 233..236 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 237..252 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 257..303 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 305..309 FT /evidence="ECO:0007829|PDB:7PSN" FT TURN 310..312 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 314..366 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 367..370 FT /evidence="ECO:0007829|PDB:4MYH" FT HELIX 372..395 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 400..413 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 430..432 FT /evidence="ECO:0007829|PDB:4MYC" FT STRAND 436..443 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 445..448 FT /evidence="ECO:0007829|PDB:7PSM" FT STRAND 451..459 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 461..468 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 473..475 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 476..482 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 489..495 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 500..502 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 505..508 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 511..515 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 523..525 FT /evidence="ECO:0007829|PDB:4MYC" FT HELIX 526..530 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 531..533 FT /evidence="ECO:0007829|PDB:4MYC" FT HELIX 539..548 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 552..557 FT /evidence="ECO:0007829|PDB:7PSN" FT TURN 559..563 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 565..567 FT /evidence="ECO:0007829|PDB:4MYC" FT HELIX 568..570 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 575..589 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 592..598 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 601..603 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 605..616 FT /evidence="ECO:0007829|PDB:7PSN" FT TURN 621..623 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 625..629 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 633..635 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 640..646 FT /evidence="ECO:0007829|PDB:7PSN" FT STRAND 649..654 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 656..660 FT /evidence="ECO:0007829|PDB:7PSN" FT HELIX 666..675 FT /evidence="ECO:0007829|PDB:7PSN" SQ SEQUENCE 690 AA; 77522 MW; 009757811D331343 CRC64; MLLLPRCPVI GRIVRSKFRS GLIRNHSPVI FTVSKLSTQR PLLFNSAVNL WNQAQKDITH KKSVEQFSSA PKVKTQVKKT SKAPTLSELK ILKDLFRYIW PKGNNKVRIR VLIALGLLIS AKILNVQVPF FFKQTIDSMN IAWDDPTVAL PAAIGLTILC YGVARFGSVL FGELRNAVFA KVAQNAIRTV SLQTFQHLMK LDLGWHLSRQ TGGLTRAMDR GTKGISQVLT AMVFHIIPIS FEISVVCGIL TYQFGASFAA ITFSTMLLYS IFTIKTTAWR THFRRDANKA DNKAASVALD SLINFEAVKY FNNEKYLADK YNGSLMNYRD SQIKVSQSLA FLNSGQNLIF TTALTAMMYM GCTGVIGGNL TVGDLVLINQ LVFQLSVPLN FLGSVYRDLK QSLIDMETLF KLRKNEVKIK NAERPLMLPE NVPYDITFEN VTFGYHPDRK ILKNASFTIP AGWKTAIVGS SGSGKSTILK LVFRFYDPES GRILINGRDI KEYDIDALRK VIGVVPQDTP LFNDTIWENV KFGRIDATDE EVITVVEKAQ LAPLIKKLPQ GFDTIVGERG LMISGGEKQR LAIARVLLKN ARIMFFDEAT SALDTHTEQA LLRTIRDNFT SGSRTSVYIA HRLRTIADAD KIIVLDNGRV REEGKHLELL AMPGSLYREL WTIQEDLDHL ENELKDQQEL //