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P40212

- RL13B_YEAST

UniProt

P40212 - RL13B_YEAST

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Protein

60S ribosomal protein L13-B

Gene

RPL13B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: SGD

GO - Biological processi

  1. cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-32834-MONOMER.
ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.
REACT_232946. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_252688. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_257951. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13-B
Gene namesi
Name:RPL13B
Synonyms:RPL13
Ordered Locus Names:YMR142C
ORF Names:YM9375.11C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XIII

Organism-specific databases

CYGDiYMR142c.
SGDiS000004750. RPL13B.

Subcellular locationi

Cytoplasm 1 Publication

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19919960S ribosomal protein L13-BPRO_0000192939Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei144 – 1441Phosphothreonine1 Publication
Modified residuei152 – 1521Phosphothreonine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP40212.
PeptideAtlasiP40212.

Expressioni

Gene expression databases

GenevestigatoriP40212.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi35318. 97 interactions.
DIPiDIP-2591N.
IntActiP40212. 61 interactions.
MINTiMINT-8285395.
STRINGi4932.YMR142C.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4CUWelectron microscopy3.70L1-199[»]
ProteinModelPortaliP40212.
SMRiP40212. Positions 2-195.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13e family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000007818.
HOGENOMiHOG000170452.
InParanoidiP40212.
KOiK02873.
OMAiGKGNNMI.
OrthoDBiEOG7W9S6G.

Family and domain databases

InterProiIPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
[Graphical view]
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiPF01294. Ribosomal_L13e. 1 hit.
[Graphical view]
PROSITEiPS01104. RIBOSOMAL_L13E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P40212-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAISKNLPIL KNHFRKHWQE RVKVHFDQAG KKVSRRNARA ARAAKIAPRP
60 70 80 90 100
LDLLRPVVRA PTVKYNRKVR AGRGFTLAEV KAAGLTAAYA RTIGIAVDHR
110 120 130 140 150
RQNRNQEIFD ANVQRLKEYQ SKIIVFPRDG KAPEAEQVLS AAATFPIAQP
160 170 180 190
ATDVEARAVQ DNGESAFRTL RLARSEKKFR GIREKRAREK AEAEAEKKK
Length:199
Mass (Da):22,525
Last modified:February 1, 1995 - v1
Checksum:iBEA3B423EE76EF23
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z47071 Genomic DNA. Translation: CAA87356.1.
BK006946 Genomic DNA. Translation: DAA10038.1.
PIRiS50398.
RefSeqiNP_013862.1. NM_001182644.1.

Genome annotation databases

EnsemblFungiiYMR142C; YMR142C; YMR142C.
GeneIDi855173.
KEGGisce:YMR142C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z47071 Genomic DNA. Translation: CAA87356.1 .
BK006946 Genomic DNA. Translation: DAA10038.1 .
PIRi S50398.
RefSeqi NP_013862.1. NM_001182644.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4CUW electron microscopy 3.70 L 1-199 [» ]
ProteinModelPortali P40212.
SMRi P40212. Positions 2-195.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 35318. 97 interactions.
DIPi DIP-2591N.
IntActi P40212. 61 interactions.
MINTi MINT-8285395.
STRINGi 4932.YMR142C.

Proteomic databases

MaxQBi P40212.
PeptideAtlasi P40212.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YMR142C ; YMR142C ; YMR142C .
GeneIDi 855173.
KEGGi sce:YMR142C.

Organism-specific databases

CYGDi YMR142c.
SGDi S000004750. RPL13B.

Phylogenomic databases

GeneTreei ENSGT00390000007818.
HOGENOMi HOG000170452.
InParanoidi P40212.
KOi K02873.
OMAi GKGNNMI.
OrthoDBi EOG7W9S6G.

Enzyme and pathway databases

BioCyci YEAST:G3O-32834-MONOMER.
Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.
REACT_232946. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_252688. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_257951. Peptide chain elongation.

Miscellaneous databases

NextBioi 978614.

Gene expression databases

Genevestigatori P40212.

Family and domain databases

InterProi IPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
[Graphical view ]
PANTHERi PTHR11722. PTHR11722. 1 hit.
Pfami PF01294. Ribosomal_L13e. 1 hit.
[Graphical view ]
PROSITEi PS01104. RIBOSOMAL_L13E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
    Planta R.J., Mager W.H.
    Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE, SUBUNIT.
  4. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  6. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
    Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
    Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-144 AND THR-152, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRL13B_YEAST
AccessioniPrimary (citable) accession number: P40212
Secondary accession number(s): D6VZW4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 26, 2014
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 54200 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for L13 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

External Data

Dasty 3