Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P40212 (RL13B_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
60S ribosomal protein L13-B
Gene names
Name:RPL13B
Synonyms:RPL13
Ordered Locus Names:YMR142C
ORF Names:YM9375.11C
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length199 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S). Ref.3

Subcellular location

Cytoplasm Ref.4.

Miscellaneous

Present with 54200 molecules/cell in log phase SD medium.

There are 2 genes for L13 in yeast.

Sequence similarities

Belongs to the ribosomal protein L13e family.

Ontologies

Keywords
   Cellular componentCytoplasm
   Molecular functionRibonucleoprotein
Ribosomal protein
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcytoplasmic translation

Inferred by curator PubMed 11983894. Source: SGD

   Cellular_componentcytosolic large ribosomal subunit

Inferred from direct assay PubMed 11983894. Source: SGD

   Molecular_functionstructural constituent of ribosome

Inferred by curator PubMed 11983894. Source: SGD

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 19919960S ribosomal protein L13-B
PRO_0000192939

Amino acid modifications

Modified residue1441Phosphothreonine Ref.6
Modified residue1521Phosphothreonine Ref.6

Sequences

Sequence LengthMass (Da)Tools
P40212 [UniParc].

Last modified February 1, 1995. Version 1.
Checksum: BEA3B423EE76EF23

FASTA19922,525
        10         20         30         40         50         60 
MAISKNLPIL KNHFRKHWQE RVKVHFDQAG KKVSRRNARA ARAAKIAPRP LDLLRPVVRA 

        70         80         90        100        110        120 
PTVKYNRKVR AGRGFTLAEV KAAGLTAAYA RTIGIAVDHR RQNRNQEIFD ANVQRLKEYQ 

       130        140        150        160        170        180 
SKIIVFPRDG KAPEAEQVLS AAATFPIAQP ATDVEARAVQ DNGESAFRTL RLARSEKKFR 

       190 
GIREKRAREK AEAEAEKKK 

« Hide

References

« Hide 'large scale' references
[1]"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII."
Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P. expand/collapse author list , Skelton J., Walsh S.V., Whitehead S., Barrell B.G.
Nature 387:90-93(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[2]"The reference genome sequence of Saccharomyces cerevisiae: Then and now."
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.
G3 (Bethesda) 4:389-398(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[3]"The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
Planta R.J., Mager W.H.
Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NOMENCLATURE, SUBUNIT.
[4]"Global analysis of protein localization in budding yeast."
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., Weissman J.S., O'Shea E.K.
Nature 425:686-691(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
[5]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[6]"Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-144 AND THR-152, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z47071 Genomic DNA. Translation: CAA87356.1.
BK006946 Genomic DNA. Translation: DAA10038.1.
PIRS50398.
RefSeqNP_013862.1. NM_001182644.1.

3D structure databases

ProteinModelPortalP40212.
SMRP40212. Positions 2-195.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid35318. 96 interactions.
DIPDIP-2591N.
IntActP40212. 61 interactions.
MINTMINT-8285395.
STRING4932.YMR142C.

Proteomic databases

MaxQBP40212.
PeptideAtlasP40212.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYMR142C; YMR142C; YMR142C.
GeneID855173.
KEGGsce:YMR142C.

Organism-specific databases

CYGDYMR142c.
SGDS000004750. RPL13B.

Phylogenomic databases

GeneTreeENSGT00390000007818.
HOGENOMHOG000170452.
KOK02873.
OMAGKGNNMI.
OrthoDBEOG7W9S6G.

Enzyme and pathway databases

BioCycYEAST:G3O-32834-MONOMER.

Gene expression databases

GenevestigatorP40212.

Family and domain databases

InterProIPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
[Graphical view]
PANTHERPTHR11722. PTHR11722. 1 hit.
PfamPF01294. Ribosomal_L13e. 1 hit.
[Graphical view]
PROSITEPS01104. RIBOSOMAL_L13E. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio978614.

Entry information

Entry nameRL13B_YEAST
AccessionPrimary (citable) accession number: P40212
Secondary accession number(s): D6VZW4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: May 14, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome XIII

Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries