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Protein

Nuclear GTP-binding protein NUG1

Gene

NUG1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GTPase required for 60S ribosomal subunit export to the cytoplasm.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi213 – 216GTPSequence analysis4
Nucleotide bindingi287 – 294GTPSequence analysis8
Nucleotide bindingi336 – 339GTPSequence analysis4

GO - Molecular functioni

  • GTPase activity Source: SGD
  • GTP binding Source: UniProtKB-KW
  • RNA binding Source: SGD

GO - Biological processi

  • maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: SGD
  • protein transport Source: UniProtKB-KW
  • ribosomal large subunit export from nucleus Source: SGD
Complete GO annotation...

Keywords - Biological processi

Protein transport, Ribosome biogenesis, Transport

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciYEAST:G3O-30193-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear GTP-binding protein NUG1
Alternative name(s):
Nuclear GTPase 1
Gene namesi
Name:NUG1
Ordered Locus Names:YER006W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome V

Organism-specific databases

EuPathDBiFungiDB:YER006W.
SGDiS000000808. NUG1.

Subcellular locationi

GO - Cellular componenti

  • nucleolus Source: SGD
  • nucleus Source: SGD
  • preribosome, large subunit precursor Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001224521 – 520Nuclear GTP-binding protein NUG1Add BLAST520

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei337PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP40010.
PRIDEiP40010.

PTM databases

iPTMnetiP40010.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
LOC1P435864EBI-22449,EBI-22906
NOP4P378384EBI-22449,EBI-12122
RPF2P361607EBI-22449,EBI-15881

Protein-protein interaction databases

BioGridi36736. 161 interactors.
DIPiDIP-6291N.
IntActiP40010. 70 interactors.
MINTiMINT-597077.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JCTelectron microscopy3.08s1-520[»]
ProteinModelPortaliP40010.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini165 – 343CP-type GPROSITE-ProRule annotationAdd BLAST179

Domaini

In contrast to other GTP-binding proteins, this family is characterized by a circular permutation of the GTPase motifs described by a G4-G1-G3 pattern.

Sequence similaritiesi

Belongs to the TRAFAC class YlqF/YawG GTPase family.PROSITE-ProRule annotation
Contains 1 CP-type G (guanine nucleotide-binding) domain.PROSITE-ProRule annotation

Phylogenomic databases

GeneTreeiENSGT00810000125472.
HOGENOMiHOG000207716.
InParanoidiP40010.
KOiK14538.
OMAiVEQTTIV.
OrthoDBiEOG092C5HXV.

Family and domain databases

Gene3Di1.10.1580.10. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR030378. G_CP_dom.
IPR014813. Gnl3_N_dom.
IPR023179. GTP-bd_ortho_bundle.
IPR006073. GTP_binding_domain.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF08701. GN3L_Grn1. 1 hit.
PF01926. MMR_HSR1. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51721. G_CP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P40010-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVRKRQSRR TSTKLKEGIK KKASAHRKKE KKMAKKDVTW RSRSKKDPGI
60 70 80 90 100
PSNFPYKAKI LEEIEAKKMK DLEERELAKQ QRLEARKAAK EQGVDAMDED
110 120 130 140 150
MIEDDENGLA ALVESAQQAA AEYEGTPSND ADVRDDELDV IDYNIDFYGE
160 170 180 190 200
DVEGESELEK SRKAYDKIFK SVIDASDVIL YVLDARDPES TRSRKVEEAV
210 220 230 240 250
LQSQGKRLIL ILNKVDLIPP HVLEQWLNYL KSSFPTIPLR ASSGAVNGTS
260 270 280 290 300
FNRKLSQTTT ASALLESLKT YSNNSNLKRS IVVGVIGYPN VGKSSVINAL
310 320 330 340 350
LARRGGQSKA CPVGNEAGVT TSLREIKIDN KLKILDSPGI CFPSENKKRS
360 370 380 390 400
KVEHEAELAL LNALPAKHIV DPYPAVLMLV KRLAKSDEMT ESFKKLYEIP
410 420 430 440 450
PIPANDADTF TKHFLIHVAR KRGRLGKGGI PNLASAGLSV LNDWRDGKIL
460 470 480 490 500
GWVLPNTSAA ASQQDKQNLS TINTGTKQAP IAANESTIVS EWSKEFDLDG
510 520
LFSSLDKAID ASKDQDTMME
Length:520
Mass (Da):57,709
Last modified:February 1, 1995 - v1
Checksum:iF75E4860D114756A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18778 Genomic DNA. Translation: AAB64539.1.
BK006939 Genomic DNA. Translation: DAA07656.1.
PIRiS50464.
RefSeqiNP_010921.1. NM_001178897.1.

Genome annotation databases

EnsemblFungiiYER006W; YER006W; YER006W.
GeneIDi856723.
KEGGisce:YER006W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18778 Genomic DNA. Translation: AAB64539.1.
BK006939 Genomic DNA. Translation: DAA07656.1.
PIRiS50464.
RefSeqiNP_010921.1. NM_001178897.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JCTelectron microscopy3.08s1-520[»]
ProteinModelPortaliP40010.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi36736. 161 interactors.
DIPiDIP-6291N.
IntActiP40010. 70 interactors.
MINTiMINT-597077.

PTM databases

iPTMnetiP40010.

Proteomic databases

MaxQBiP40010.
PRIDEiP40010.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYER006W; YER006W; YER006W.
GeneIDi856723.
KEGGisce:YER006W.

Organism-specific databases

EuPathDBiFungiDB:YER006W.
SGDiS000000808. NUG1.

Phylogenomic databases

GeneTreeiENSGT00810000125472.
HOGENOMiHOG000207716.
InParanoidiP40010.
KOiK14538.
OMAiVEQTTIV.
OrthoDBiEOG092C5HXV.

Enzyme and pathway databases

BioCyciYEAST:G3O-30193-MONOMER.

Miscellaneous databases

PROiP40010.

Family and domain databases

Gene3Di1.10.1580.10. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR030378. G_CP_dom.
IPR014813. Gnl3_N_dom.
IPR023179. GTP-bd_ortho_bundle.
IPR006073. GTP_binding_domain.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF08701. GN3L_Grn1. 1 hit.
PF01926. MMR_HSR1. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51721. G_CP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNUG1_YEAST
AccessioniPrimary (citable) accession number: P40010
Secondary accession number(s): D3DLQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 2, 2016
This is version 140 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 7130 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome V
    Yeast (Saccharomyces cerevisiae) chromosome V: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.