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P39944

- UBP5_YEAST

UniProt

P39944 - UBP5_YEAST

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Protein
Ubiquitin carboxyl-terminal hydrolase 5
Gene
UBP5, YER144C
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei455 – 4551Nucleophile By similarity
Active sitei761 – 7611Proton acceptor By similarity

GO - Molecular functioni

  1. protein binding Source: IntAct
  2. ubiquitin-specific protease activity Source: SGD

GO - Biological processi

  1. protein deubiquitination Source: SGD
  2. ubiquitin-dependent protein catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Keywords - Biological processi

Ubl conjugation pathway

Enzyme and pathway databases

BioCyciYEAST:G3O-30305-MONOMER.

Protein family/group databases

MEROPSiC19.006.

Names & Taxonomyi

Protein namesi
Recommended name:
Ubiquitin carboxyl-terminal hydrolase 5 (EC:3.4.19.12)
Alternative name(s):
Deubiquitinating enzyme 5
Ubiquitin thioesterase 5
Ubiquitin-specific-processing protease 5
Gene namesi
Name:UBP5
Ordered Locus Names:YER144C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome V

Organism-specific databases

CYGDiYER144c.
SGDiS000000946. UBP5.

Subcellular locationi

GO - Cellular componenti

  1. cellular bud neck Source: SGD
  2. incipient cellular bud site Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 805805Ubiquitin carboxyl-terminal hydrolase 5
PRO_0000080590Add
BLAST

Proteomic databases

MaxQBiP39944.
PaxDbiP39944.

Expressioni

Gene expression databases

GenevestigatoriP39944.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
HOF1Q050803EBI-19847,EBI-5412

Protein-protein interaction databases

BioGridi36893. 29 interactions.
DIPiDIP-1716N.
IntActiP39944. 7 interactions.
MINTiMINT-409937.
STRINGi4932.YER144C.

Structurei

3D structure databases

ProteinModelPortaliP39944.
SMRiP39944. Positions 445-803.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini159 – 283125Rhodanese
Add
BLAST
Domaini446 – 804359USP
Add
BLAST

Sequence similaritiesi

Belongs to the peptidase C19 family.
Contains 1 rhodanese domain.
Contains 1 USP domain.

Phylogenomic databases

eggNOGiCOG5533.
GeneTreeiENSGT00750000117363.
HOGENOMiHOG000248489.
KOiK11839.
OMAiKGISANE.
OrthoDBiEOG7R2BSX.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR018200. Pept_C19ubi-hydrolase_C_CS.
IPR001394. Peptidase_C19_UCH.
IPR001763. Rhodanese-like_dom.
IPR028889. UCH/PAN2.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF00443. UCH. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
PS00972. USP_1. 1 hit.
PS00973. USP_2. 1 hit.
PS50235. USP_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39944-1 [UniParc]FASTAAdd to Basket

« Hide

MGSEQALSEV VESAKERFGR LRHLVQKFLD DDDVPQECLP LLQECAEIWS    50
SYVDACQDIT MQAPKEDANR LSKGFLRLNE TAFLYYMIVY TLLEDTLPRL 100
KEFSSNKDQN VRNLYGERIQ LLHNDPNIER IRNVIENYPK FIQLQTIEPG 150
KLSSMLHFHG DALLLIDVRP RSEFVRAHIK CKNIICIDPA SFKDSFTDQQ 200
IESVSLITSP HSDITFFSNR DKFKFIILYT DTQLHNNFQQ RQTRILAKIL 250
SQNSVIKPLS GTKILILENG FSNWVKLGGA YQSSVSETAH LTSSSSTPAF 300
GSPQVPTGLF NQKSLSPNKD KSMPMVSMNT QPLLTTVQRP QLPLYYSDLP 350
IIPQPSPNRN SPTVQKFSPH PPTTLSKLNT PSTIQNKANT VERISPDIRA 400
AQAHAYLPPA SNVFSPRIPP LPQQNLSSSR QTILNNSQVL DLDLIVGLEN 450
IGNCCYMNCI LQCLVGTHDL VRMFLDNTYL NFINFDSSRG SKGLLAKNFA 500
ILVNNMHRHG AFTPPNVRTI PVQTIQFKKI CGHINPMYSD SMQQDCQEFC 550
QFLLDGLHED LNQNGSKKHL KQLSDEEERM REKMSIRKAS ALEWERFLLT 600
DFSAIIDLFQ GQYASRLQCQ VCEHTSTTYQ TFSVLSVPVP RVKTCNILDC 650
FREFTKCERL GVDEQWSCPK CLKKQPSTKQ LKITRLPKKL IINLKRFDNQ 700
MNKNNVFVQY PYSLDLTPYW ARDFNHEAIV NEDIPTRGQV PPFRYRLYGV 750
ACHSGSLYGG HYTSYVYKGP KKGWYFFDDS LYRPITFSTE FITPSAYVLF 800
YERIF 805
Length:805
Mass (Da):92,261
Last modified:February 1, 1995 - v1
Checksum:i884054A66370DFF7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U10082 Genomic DNA. Translation: AAC48928.1.
U18917 Genomic DNA. Translation: AAB64671.1.
BK006939 Genomic DNA. Translation: DAA07805.1.
PIRiS50277.
RefSeqiNP_011071.3. NM_001179034.3.

Genome annotation databases

EnsemblFungiiYER144C; YER144C; YER144C.
GeneIDi856887.
KEGGisce:YER144C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U10082 Genomic DNA. Translation: AAC48928.1 .
U18917 Genomic DNA. Translation: AAB64671.1 .
BK006939 Genomic DNA. Translation: DAA07805.1 .
PIRi S50277.
RefSeqi NP_011071.3. NM_001179034.3.

3D structure databases

ProteinModelPortali P39944.
SMRi P39944. Positions 445-803.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 36893. 29 interactions.
DIPi DIP-1716N.
IntActi P39944. 7 interactions.
MINTi MINT-409937.
STRINGi 4932.YER144C.

Protein family/group databases

MEROPSi C19.006.

Proteomic databases

MaxQBi P39944.
PaxDbi P39944.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YER144C ; YER144C ; YER144C .
GeneIDi 856887.
KEGGi sce:YER144C.

Organism-specific databases

CYGDi YER144c.
SGDi S000000946. UBP5.

Phylogenomic databases

eggNOGi COG5533.
GeneTreei ENSGT00750000117363.
HOGENOMi HOG000248489.
KOi K11839.
OMAi KGISANE.
OrthoDBi EOG7R2BSX.

Enzyme and pathway databases

BioCyci YEAST:G3O-30305-MONOMER.

Miscellaneous databases

NextBioi 983284.

Gene expression databases

Genevestigatori P39944.

Family and domain databases

Gene3Di 3.40.250.10. 1 hit.
InterProi IPR018200. Pept_C19ubi-hydrolase_C_CS.
IPR001394. Peptidase_C19_UCH.
IPR001763. Rhodanese-like_dom.
IPR028889. UCH/PAN2.
[Graphical view ]
Pfami PF00581. Rhodanese. 1 hit.
PF00443. UCH. 1 hit.
[Graphical view ]
SMARTi SM00450. RHOD. 1 hit.
[Graphical view ]
SUPFAMi SSF52821. SSF52821. 1 hit.
PROSITEi PS50206. RHODANESE_3. 1 hit.
PS00972. USP_1. 1 hit.
PS00973. USP_2. 1 hit.
PS50235. USP_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "UBP5 encodes a putative yeast ubiquitin-specific protease that is related to the human Tre-2 oncogene product."
    Xiao W., Fontanie T., Tang M.
    Yeast 10:1497-1502(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiUBP5_YEAST
AccessioniPrimary (citable) accession number: P39944
Secondary accession number(s): D3DM51
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: June 11, 2014
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 300 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome V
    Yeast (Saccharomyces cerevisiae) chromosome V: entries and gene names

External Data

Dasty 3

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