P39880 (CUX1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 130.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Homeobox protein cut-like 1 Alternative name(s): CCAAT displacement protein Short name=CDP Homeobox protein cux-1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1505 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Probably has a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer By similarity. |
| Subunit structure | Interacts with BANP By similarity. |
| Subcellular location | |
| Miscellaneous | Asn-1290 may participate in regulating DNA-binding activity by promoting homo- and heterodimerization. |
| Sequence similarities | Belongs to the CUT homeobox family. Contains 3 CUT DNA-binding domains. Contains 1 homeobox DNA-binding domain. |
Ontologies
Alternative products
| This entry describes 11 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform 1 (identifier: P39880-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P39880-2) The sequence of this isoform differs from the canonical sequence as follows: 632-653: Missing. | ||||||
| Isoform 3 (identifier: P39880-3) The sequence of this isoform differs from the canonical sequence as follows: 1-10: MLCVAGARLK → MAANVGSMFQYWKRFDLQQLQ | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: P39880-4) The sequence of this isoform differs from the canonical sequence as follows: 408-509: Missing. | ||||||
| Isoform 6 (identifier: P39880-5) The sequence of this isoform differs from the canonical sequence as follows: 632-687: Missing. | ||||||
| Isoform 7 (identifier: P39880-6) The sequence of this isoform differs from the canonical sequence as follows: 408-509: Missing. 632-687: Missing. | ||||||
| Isoform 11 (identifier: P39880-9) The sequence of this isoform differs from the canonical sequence as follows: 1-10: MLCVAGARLK → MAANVGSMFQYWKRFDLQQLQ 90-135: Missing. 409-667: SARRKGKDQP...TRIRASETGS → RCAELQVRIT...NGAAAGDLWQ 668-1505: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q13948-1) Also known as: CASP; The sequence of this isoform can be found in the external entry Q13948. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Isoform 8 (identifier: Q13948-2) The sequence of this isoform can be found in the external entry Q13948. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 9 (identifier: Q13948-9) The sequence of this isoform can be found in the external entry Q13948. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 10 (identifier: Q13948-10) The sequence of this isoform can be found in the external entry Q13948. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1505 | 1505 | Homeobox protein cut-like 1 | PRO_0000202393 | |||||
Regions | |||||||||
| DNA binding | 542 – 629 | 88 | CUT 1 | ||||||
| DNA binding | 934 – 1021 | 88 | CUT 2 | ||||||
| DNA binding | 1117 – 1204 | 88 | CUT 3 | ||||||
| DNA binding | 1244 – 1303 | 60 | Homeobox | ||||||
| Coiled coil | 7 – 363 | 357 | Potential | ||||||
| Coiled coil | 669 – 725 | 57 | Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 763 | 1 | Phosphoserine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 10 | 10 | MLCVAGARLK → MAANVGSMFQYWKRFDLQQL Q in isoform 3 and isoform 11. | VSP_015747 | |||||
| Alternative sequence | 90 – 135 | 46 | Missing in isoform 11. | VSP_045924 | |||||
| Alternative sequence | 408 – 509 | 102 | Missing in isoform 5 and isoform 7. | VSP_017358 | |||||
| Alternative sequence | 409 – 667 | 259 | SARRK…SETGS → RCAELQVRITEAVATATEQR ELIARLEQDLSIIQSIQRPD AEGAAEHRLEKIPEPIKEAT ALFYGPAAPASGALPEGQVD SLLSIISSQRERFRARNQEL EAENRLAQHTLQALQSELDS LRADNIKLFEKIKFLQSYPG RGSGSDDTELRYSSQYEERL DPFSSFSKRERQRKYLSLSP WDKATLSMGRLVLSNKMART IGFFYTLFLHCLVFLVLYKL AWSESMERDCATFCAKKFAD HLHKFHENDNGAAAGDLWQ in isoform 11. | VSP_045925 | |||||
| Alternative sequence | 632 – 687 | 56 | Missing in isoform 6 and isoform 7. | VSP_017359 | |||||
| Alternative sequence | 632 – 653 | 22 | Missing in isoform 2. | VSP_002310 | |||||
| Alternative sequence | 668 – 1505 | 838 | Missing in isoform 11. | VSP_045926 | |||||
Experimental info | |||||||||
| Sequence conflict | 5 | 1 | A → R in M74099. Ref.1 | ||||||
| Sequence conflict | 145 | 1 | K → I in BAG53691. Ref.2 | ||||||
| Sequence conflict | 260 | 1 | A → V in BAG53691. Ref.2 | ||||||
| Sequence conflict | 704 – 705 | 2 | DA → EP in M74099. Ref.1 | ||||||
| Sequence conflict | 844 | 1 | E → R in M74099. Ref.1 | ||||||
| Sequence conflict | 1436 | 1 | S → T in M74099. Ref.1 | ||||||
Sequences
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Human CCAAT displacement protein is homologous to the Drosophila homeoprotein, cut." Neufeld E.J., Skalnik D.G., Lievens P.M.-J., Orkin S.H. Nat. Genet. 1:50-55(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2). Tissue: Umbilical vein. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 11). Tissue: Brain. |
| [3] | "The DNA sequence of human chromosome 7." Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L. Wilson R.K.Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Duodenum. |
| [5] | "Large-scale sequencing of two regions in human chromosome 7q22: analysis of 650 kb of genomic sequence around the EPO and CUTL1 loci reveals 17 genes." Gloeckner G., Scherer S., Schattevoy R., Boright A.P., Weber J., Tsui L.-C., Rosenthal A. Genome Res. 8:1060-1073(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 48-224 (ISOFORMS 1/2/3). |
| [6] | "Exon/intron structure and alternative transcripts of the CUTL1 gene." Rong Zeng W., Soucie E., Sung Moon N., Martin-Soudant N., Berube G., Leduy L., Nepveu A. Gene 241:75-85(2000) [PubMed] [Europe PMC] [Abstract] Cited for: ALTERNATIVE SPLICING (ISOFORMS 5; 6 AND 7). |
| [7] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Embryonic kidney. |
| [8] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [9] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Leukemic T-cell. |
| [10] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-763, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M74099 mRNA. No translation available. AK122726 mRNA. Translation: BAG53691.1. AC005072 Genomic DNA. No translation available. AC005086 Genomic DNA. Translation: AAP22331.1. AC005088 Genomic DNA. No translation available. AC005096 Genomic DNA. Translation: AAS07410.1. AC005103 Genomic DNA. Translation: AAS07388.1. AC092788 Genomic DNA. Translation: AAS07523.1. BC066592 mRNA. Translation: AAH66592.1. AF047825 Genomic DNA. Translation: AAC78778.1. |
| IPI | IPI00026673. IPI00419894. IPI00472247. IPI00736943. IPI00741668. IPI00742111. IPI00982754. |
| RefSeq | NP_001189472.1. NM_001202543.1. NP_001189473.1. NM_001202544.1. NP_001189474.1. NM_001202545.1. NP_852477.1. NM_181500.2. NP_853530.2. NM_181552.3. |
| UniGene | Hs.191482. |
3D structure databases | |
| ProteinModelPortal | P39880. |
| SMR | P39880. Positions 547-635, 934-1024, 1116-1301. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P39880. 7 interactions. |
| MINT | MINT-271237. |
| STRING | 9606.ENSP00000292535. |
PTM databases | |
| PhosphoSite | P39880. |
Polymorphism databases | |
| DMDM | 296439379. |
Proteomic databases | |
| PRIDE | P39880. |
Protocols and materials databases | |
| DNASU | 1523. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000292535; ENSP00000292535; ENSG00000257923. ENST00000360264; ENSP00000353401; ENSG00000257923. ENST00000425244; ENSP00000409745; ENSG00000257923. ENST00000546411; ENSP00000450125; ENSG00000257923. ENST00000549414; ENSP00000446630; ENSG00000257923. ENST00000550008; ENSP00000447373; ENSG00000257923. ENST00000556210; ENSP00000451558; ENSG00000257923. ENST00000562419; ENSP00000456964; ENSG00000259938. ENST00000562858; ENSP00000456303; ENSG00000259938. ENST00000565244; ENSP00000456251; ENSG00000259938. ENST00000566988; ENSP00000455160; ENSG00000259938. ENST00000568052; ENSP00000458017; ENSG00000259938. ENST00000568166; ENSP00000456980; ENSG00000259938. ENST00000569498; ENSP00000455398; ENSG00000259938. |
| GeneID | 1523. |
| KEGG | hsa:1523. |
| UCSC | uc003uys.4. human. uc003uyx.4. human. |
Organism-specific databases | |
| CTD | 1523. |
| GeneCards | GC07P101459. |
| HGNC | HGNC:2557. CUX1. |
| HPA | HPA003277. HPA003317. |
| MIM | 116896. gene. |
| neXtProt | NX_P39880. |
| PharmGKB | PA162382924. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | HBG051268. |
| KO | K09313. |
| OMA | PPIETSK. |
Enzyme and pathway databases | |
| Reactome | REACT_116125. Disease. |
Gene expression databases | |
| ArrayExpress | P39880. |
| Bgee | P39880. |
| CleanEx | HS_CUX1. |
| Genevestigator | P39880. |
Family and domain databases | |
| Gene3D | 1.10.10.60. 1 hit. 1.10.260.40. 3 hits. |
| InterPro | IPR003350. Hmoeo_CUT. IPR017970. Homeobox_CS. IPR001356. Homeodomain. IPR009057. Homeodomain-like. IPR010982. Lambda_DNA-bd_dom. [Graphical view] |
| Pfam | PF02376. CUT. 3 hits. PF00046. Homeobox. 1 hit. [Graphical view] |
| SMART | SM00389. HOX. 1 hit. [Graphical view] |
| SUPFAM | SSF46689. Homeodomain_like. 1 hit. SSF47413. Lambda_like_DNA. 3 hits. |
| PROSITE | PS51042. CUT. 3 hits. PS00027. HOMEOBOX_1. 1 hit. PS50071. HOMEOBOX_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | CUX1. human. |
| GenomeRNAi | 1523. |
| NextBio | 35535424. |
| PMAP-CutDB | P39880. |
| SOURCE | Search... |
Entry information
| Entry name | CUX1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P39880 Secondary accession number(s): B3KV79 Q9UEV5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
