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Protein

Uncharacterized fimbrial-like protein YgiL

Gene

ygiL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12363-MONOMER.
ECOL316407:JW3011-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized fimbrial-like protein YgiL
Gene namesi
Name:ygiL
Ordered Locus Names:b3043, JW3011
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12363. ygiL.

Subcellular locationi

GO - Cellular componenti

  • pilus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Fimbrium

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 183160Uncharacterized fimbrial-like protein YgiLPRO_0000009260Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi41 ↔ 80Sequence analysis

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP39834.

Interactioni

Protein-protein interaction databases

BioGridi4262962. 62 interactions.
IntActiP39834. 25 interactions.
STRINGi511145.b3043.

Structurei

3D structure databases

ProteinModelPortaliP39834.
SMRiP39834. Positions 28-183.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the fimbrial protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105H8W. Bacteria.
ENOG4111SNU. LUCA.
HOGENOMiHOG000260127.
InParanoidiP39834.
OMAiEDINVNM.
OrthoDBiEOG6GR38K.
PhylomeDBiP39834.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P39834-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAFKKSLLV AGVAMILSNN VFADEGHGIV KFKGEVISAP CSIKPGDEDL
60 70 80 90 100
TVNLGEVADT VLKSDQKSLA EPFTIHLQDC MLSQGGTTYS KAKVTFTTAN
110 120 130 140 150
TMTGQSDLLK NTKETEIGGA TGVGVRILDS QSGEVTLGTP VVITFNNTNS
160 170 180
YQELNFKARM ESPSKDATPG NVYAQADYKI AYE
Length:183
Mass (Da):19,494
Last modified:November 1, 1997 - v2
Checksum:i5DFD6042613C8504
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti3 – 31A → T (PubMed:1917833).Curated
Sequence conflicti15 – 151M → T (PubMed:1917833).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69211.1.
U00096 Genomic DNA. Translation: AAC76079.1.
AP009048 Genomic DNA. Translation: BAE77099.1.
M64472 Genomic DNA. No translation available.
PIRiA65092.
RefSeqiNP_417515.1. NC_000913.3.
WP_001272145.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76079; AAC76079; b3043.
BAE77099; BAE77099; BAE77099.
GeneIDi947522.
KEGGiecj:JW3011.
eco:b3043.
PATRICi32121498. VBIEscCol129921_3136.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69211.1.
U00096 Genomic DNA. Translation: AAC76079.1.
AP009048 Genomic DNA. Translation: BAE77099.1.
M64472 Genomic DNA. No translation available.
PIRiA65092.
RefSeqiNP_417515.1. NC_000913.3.
WP_001272145.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39834.
SMRiP39834. Positions 28-183.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262962. 62 interactions.
IntActiP39834. 25 interactions.
STRINGi511145.b3043.

Proteomic databases

PaxDbiP39834.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76079; AAC76079; b3043.
BAE77099; BAE77099; BAE77099.
GeneIDi947522.
KEGGiecj:JW3011.
eco:b3043.
PATRICi32121498. VBIEscCol129921_3136.

Organism-specific databases

EchoBASEiEB2266.
EcoGeneiEG12363. ygiL.

Phylogenomic databases

eggNOGiENOG4105H8W. Bacteria.
ENOG4111SNU. LUCA.
HOGENOMiHOG000260127.
InParanoidiP39834.
OMAiEDINVNM.
OrthoDBiEOG6GR38K.
PhylomeDBiP39834.

Enzyme and pathway databases

BioCyciEcoCyc:EG12363-MONOMER.
ECOL316407:JW3011-MONOMER.

Miscellaneous databases

PROiP39834.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
PfamiPF00419. Fimbrial. 1 hit.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "The Escherichia coli htrP gene product is essential for bacterial growth at high temperatures: mapping, cloning, sequencing, and transcriptional regulation of htrP."
    Raina S., Mabey L., Georgopoulos C.
    J. Bacteriol. 173:5999-6008(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-78.
  4. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
    Borodovsky M., Rudd K.E., Koonin E.V.
    Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYGIL_ECOLI
AccessioniPrimary (citable) accession number: P39834
Secondary accession number(s): Q2M9F7, Q46869
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: November 1, 1997
Last modified: April 13, 2016
This is version 104 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.