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Protein

Transcription antiterminator LicT

Gene

licT

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t.

GO - Molecular functioni

GO - Biological processi

  • positive regulation of transcription, DNA-templated Source: CACAO
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU39080-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription antiterminator LicT
Gene namesi
Name:licT
Ordered Locus Names:BSU39080
ORF Names:N15A
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002042471 – 277Transcription antiterminator LicTAdd BLAST277

Post-translational modificationi

Phosphorylated.By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP39805.
PRIDEiP39805.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021096.

Structurei

Secondary structure

1277
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 8Combined sources6
Beta strandi11 – 15Combined sources5
Beta strandi21 – 25Combined sources5
Beta strandi27 – 30Combined sources4
Helixi41 – 43Combined sources3
Beta strandi45 – 51Combined sources7
Helixi57 – 59Combined sources3
Helixi63 – 65Combined sources3
Helixi68 – 85Combined sources18
Helixi92 – 109Combined sources18
Helixi119 – 125Combined sources7
Helixi127 – 144Combined sources18
Helixi150 – 164Combined sources15
Helixi170 – 190Combined sources21
Helixi199 – 217Combined sources19
Helixi227 – 235Combined sources9
Helixi237 – 254Combined sources18
Helixi260 – 274Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1H99X-ray1.55A57-277[»]
1L1CNMR-A/B1-55[»]
1TLVX-ray1.95A57-274[»]
ProteinModelPortaliP39805.
SMRiP39805.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP39805.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini65 – 170PRD 1PROSITE-ProRule annotationAdd BLAST106
Domaini171 – 277PRD 2PROSITE-ProRule annotationAdd BLAST107

Sequence similaritiesi

Contains 2 PRD domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CID. Bacteria.
COG3711. LUCA.
HOGENOMiHOG000223756.
InParanoidiP39805.
KOiK03488.
OMAiYPDEYAI.
PhylomeDBiP39805.

Family and domain databases

Gene3Di1.10.1790.10. 2 hits.
2.30.24.10. 1 hit.
InterProiIPR004341. CAT_RNA-bd_dom.
IPR011608. PRD.
IPR001550. Transcrpt_antitermin_CS.
[Graphical view]
PfamiPF03123. CAT_RBD. 1 hit.
PF00874. PRD. 2 hits.
[Graphical view]
SMARTiSM01061. CAT_RBD. 1 hit.
[Graphical view]
SUPFAMiSSF50151. SSF50151. 1 hit.
SSF63520. SSF63520. 2 hits.
PROSITEiPS00654. PRD_1. 1 hit.
PS51372. PRD_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39805-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIAKVINNN VISVVNEQGK ELVVMGRGLA FQKKSGDDVD EARIEKVFTL
60 70 80 90 100
DNKDVSEKFK TLLYDIPIEC MEVSEEIISY AKLQLGKKLN DSIYVSLTDH
110 120 130 140 150
INFAIQRNQK GLDIKNALLW ETKRLYKDEF AIGKEALVMV KNKTGVSLPE
160 170 180 190 200
DEAGFIALHI VNAELNEEMP NIINITKVMQ EILSIVKYHF KIEFNEESLH
210 220 230 240 250
YYRFVTHLKF FAQRLFNGTH MESQDDFLLD TVKEKYHRAY ECTKKIQTYI
260 270
EREYEHKLTS DELLYLTIHI ERVVKQA
Length:277
Mass (Da):32,317
Last modified:February 1, 1995 - v1
Checksum:iE494702FD9B4C4A4
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti79S → H in BAA11696 (PubMed:8969509).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z28340 Genomic DNA. Translation: CAA82194.1.
D83026 Genomic DNA. Translation: BAA11696.1.
AL009126 Genomic DNA. Translation: CAB15944.2.
X00754 Genomic DNA. Translation: CAA25326.1.
PIRiS47216.
RefSeqiNP_391787.2. NC_000964.3.
WP_003242598.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15944; CAB15944; BSU39080.
GeneIDi937503.
KEGGibsu:BSU39080.
PATRICi18979874. VBIBacSub10457_4099.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z28340 Genomic DNA. Translation: CAA82194.1.
D83026 Genomic DNA. Translation: BAA11696.1.
AL009126 Genomic DNA. Translation: CAB15944.2.
X00754 Genomic DNA. Translation: CAA25326.1.
PIRiS47216.
RefSeqiNP_391787.2. NC_000964.3.
WP_003242598.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1H99X-ray1.55A57-277[»]
1L1CNMR-A/B1-55[»]
1TLVX-ray1.95A57-274[»]
ProteinModelPortaliP39805.
SMRiP39805.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021096.

Proteomic databases

PaxDbiP39805.
PRIDEiP39805.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15944; CAB15944; BSU39080.
GeneIDi937503.
KEGGibsu:BSU39080.
PATRICi18979874. VBIBacSub10457_4099.

Phylogenomic databases

eggNOGiENOG4105CID. Bacteria.
COG3711. LUCA.
HOGENOMiHOG000223756.
InParanoidiP39805.
KOiK03488.
OMAiYPDEYAI.
PhylomeDBiP39805.

Enzyme and pathway databases

BioCyciBSUB:BSU39080-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP39805.

Family and domain databases

Gene3Di1.10.1790.10. 2 hits.
2.30.24.10. 1 hit.
InterProiIPR004341. CAT_RNA-bd_dom.
IPR011608. PRD.
IPR001550. Transcrpt_antitermin_CS.
[Graphical view]
PfamiPF03123. CAT_RBD. 1 hit.
PF00874. PRD. 2 hits.
[Graphical view]
SMARTiSM01061. CAT_RBD. 1 hit.
[Graphical view]
SUPFAMiSSF50151. SSF50151. 1 hit.
SSF63520. SSF63520. 2 hits.
PROSITEiPS00654. PRD_1. 1 hit.
PS51372. PRD_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLICT_BACSU
AccessioniPrimary (citable) accession number: P39805
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 2, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.