Skip Header

 
Contribute Send feedback

Reviewed, UniProtKB/Swiss-Prot P39755 (NDHF_BACSU)

Last modified November 25, 2008. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Probable NADH-quinone oxidoreductase subunit 5
    EC=1.6.99.5
Alternative name(s):
    NADH dehydrogenase subunit 5
Gene names
Name: ndhF
Synonyms: ybxE
Ordered Locus Names: BSU01830
OrganismBacillus subtilis [Complete proteome] [HAMAP]
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacillalesBacillaceaeBacillus

Protein attributes

Sequence length505 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Catalytic activity

NADH + quinone = NAD(+) + quinol.

Subcellular location

Cell membrane; Multi-pass membrane protein.

Sequence similarities

Belongs to the complex I subunit 5 family.

Ontologies

Keywords

   Cellular componentCell membrane
Membrane
   DomainTransmembrane
   LigandNAD
   Molecular functionOxidoreductase
   PTMQuinone
   Technical termComplete proteome

Gene Ontology (GO)

   Biological processATP synthesis coupled electron transport

Inferred from electronic annotation. Source: InterPro

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionNADH dehydrogenase (ubiquinone) activity

Inferred from electronic annotation. Source: InterPro

quinone binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 505505Probable NADH-quinone oxidoreductase subunit 5
PRO_0000118225

Regions

Transmembrane9 – 2921 Potential
Transmembrane37 – 5721 Potential
Transmembrane68 – 8821 Potential
Transmembrane123 – 14321 Potential
Transmembrane162 – 18221 Potential
Transmembrane204 – 22421 Potential
Transmembrane232 – 25221 Potential
Transmembrane259 – 27921 Potential
Transmembrane303 – 32321 Potential
Transmembrane355 – 37521 Potential
Transmembrane410 – 43021 Potential
Transmembrane446 – 46621 Potential

Sequences

Sequence LengthMass (Da)Tools
P39755-1 [UniParc].

Last modified November 1, 1995. Version 2.
Checksum: B62D1EE3B6004358

FASTA50555,468
        10         20         30         40         50         60 
MLVSLSLSSL LTLFFIMLMA SGISGLLFLH PRVPLSFVRI HIGILALPLL VSLLILANSG 

        70         80         90        100        110        120 
VSGNVGPWHL DSLACLMTFF VLAIGFIIQR FSVRYLMGDR SYRKYFTLFT FTTGAASMTW 

       130        140        150        160        170        180 
LSGDLRLMVL FWGATLVGLT LLIRLNSAWQ VASEAAKISG RLFLLSWFSL FFAMMWLFHA 

       190        200        210        220        230        240 
TGQWQLSLVV TNESLAGLGE WERTGIQLLI VLAVIIPAAQ WPFQRWLVES IVAPTPVSAI 

       250        260        270        280        290        300 
MHAGLVNAGG IILTRFSPLF HGGIASIILL LLASISVLIG TGISLVQVDY KRQLVGSTIG 

       310        320        330        340        350        360 
QMGFMLIQCA LGAYIAAIIH LILHGLFKAT LFLQAGSAVG RHEVSTRTNE RTSYLWVMAG 

       370        380        390        400        410        420 
RILSLVIGVA FWLTAPGDGY HLISALILGW SLSVSWDQLV AFGEGRIGRI AGLTVLGGAA 

       430        440        450        460        470        480 
LVYFIIHHLF YKWLHTTIFQ SVQPPMSAVM IVVCLLLFGS ALGTWVARHR SSVFFAVLYL 

       490        500 
WLVRLGEAKP KSVESHPDYL KQYIS 

« Hide

References

« Hide 'large scale' references
[1]"Diverse capacities for the adaptive response to DNA alkylation in Bacillus species and strains."
Morohoshi F., Munakata N.
Mutat. Res. 337:97-110(1995) [PubMed: 7565865] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome."
Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H.
Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[3]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[4]Morohoshi F., Munakata N.
Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-91.
Strain: 168.

Cross-references

Sequence databases

U28323 Genomic DNA. Translation: AAA70186.1.
AB006424 Genomic DNA. Translation: BAA33076.1.
Z99104 Genomic DNA. Translation: CAB11959.1.
D21197 Genomic DNA. Translation: BAA21007.1.
PIRC69666.
RefSeqNP_388064.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID938593.
GenomeReviewsGene locus BSU01830 in contig AL009126_GR.
KEGGbsu:BSU01830.
NMPDRfig|224308.1.peg.183.

Organism-specific databases

SubtiListBG10949. ndhF. [Micado]
CMRSearch...

Phylogenomic databases

HOGENOMP39755.

Enzyme and pathway databases

BioCycBSUB224308:BSU0183-MON.

Family and domain databases

InterProIPR003916. NADHub_OxRdtase_5.
IPR001750. Oxidored_q1.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSPR01434. NADHDHGNASE5.
ProtoNetSearch...

Entry information

Entry nameNDHF_BACSU
AccessionPrimary (citable) accession number: P39755
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: November 1, 1995
Last modified: November 25, 2008
This is version 60 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents