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Protein

Uncharacterized metal-dependent hydrolase YjjV

Gene

yjjV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

a divalent metal cation1 PublicationNote: Binds 2 divalent metal cations per subunit.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi9Divalent metal cation 11 Publication1
Metal bindingi11Divalent metal cation 11 Publication1
Metal bindingi97Divalent metal cation 11 Publication1
Metal bindingi97Divalent metal cation 21 Publication1
Metal bindingi133Divalent metal cation 21 Publication1
Metal bindingi157Divalent metal cation 21 Publication1
Metal bindingi207Divalent metal cation 11 Publication1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7952-MONOMER.
ECOL316407:JW4341-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized metal-dependent hydrolase YjjVCurated (EC:3.1.-.-Curated)
Gene namesi
Name:yjjV
Ordered Locus Names:b4378, JW4341
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12598. yjjV.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002019991 – 259Uncharacterized metal-dependent hydrolase YjjVAdd BLAST259

Proteomic databases

PaxDbiP39408.
PRIDEiP39408.

Interactioni

Protein-protein interaction databases

BioGridi4261644. 70 interactors.
DIPiDIP-12661N.
IntActiP39408. 4 interactors.
MINTiMINT-1227009.
STRINGi511145.b4378.

Structurei

Secondary structure

1259
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 8Combined sources4
Turni15 – 19Combined sources5
Helixi21 – 30Combined sources10
Beta strandi33 – 39Combined sources7
Helixi43 – 45Combined sources3
Helixi46 – 55Combined sources10
Beta strandi59 – 63Combined sources5
Helixi67 – 72Combined sources6
Helixi75 – 87Combined sources13
Beta strandi90 – 101Combined sources12
Helixi109 – 125Combined sources17
Beta strandi130 – 136Combined sources7
Helixi138 – 148Combined sources11
Beta strandi154 – 156Combined sources3
Helixi163 – 171Combined sources9
Beta strandi175 – 178Combined sources4
Helixi180 – 183Combined sources4
Turni185 – 187Combined sources3
Helixi190 – 196Combined sources7
Helixi199 – 201Combined sources3
Beta strandi202 – 204Combined sources3
Helixi223 – 225Combined sources3
Helixi226 – 236Combined sources11
Helixi241 – 256Combined sources16

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1ZZMX-ray1.80A1-259[»]
ProteinModelPortaliP39408.
SMRiP39408.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP39408.

Family & Domainsi

Sequence similaritiesi

Belongs to the TatD-type hydrolase family.Curated

Phylogenomic databases

eggNOGiENOG4105EYA. Bacteria.
COG0084. LUCA.
HOGENOMiHOG000201521.
InParanoidiP39408.
KOiK03424.
OMAiGVIHGFS.
PhylomeDBiP39408.

Family and domain databases

InterProiIPR018228. DNase_TatD-rel_CS.
IPR032466. Metal_Hydrolase.
IPR001130. TatD_family.
[Graphical view]
PANTHERiPTHR10060. PTHR10060. 1 hit.
PfamiPF01026. TatD_DNase. 1 hit.
[Graphical view]
PIRSFiPIRSF005902. DNase_TatD. 1 hit.
SUPFAMiSSF51556. SSF51556. 1 hit.
PROSITEiPS01137. TATD_1. 1 hit.
PS01090. TATD_2. 1 hit.
PS01091. TATD_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39408-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MICRFIDTHC HFDFPPFSGD EEASLQRAAQ AGVGKIIVPA TEAENFARVL
60 70 80 90 100
ALAENYQPLY AALGLHPGML EKHSDVSLEQ LQQALERRPA KVVAVGEIGL
110 120 130 140 150
DLFGDDPQFE RQQWLLDEQL KLAKRYDLPV ILHSRRTHDK LAMHLKRHDL
160 170 180 190 200
PRTGVVHGFS GSLQQAERFV QLGYKIGVGG TITYPRASKT RDVIAKLPLA
210 220 230 240 250
SLLLETDAPD MPLNGFQGQP NRPEQAARVF AVLCELRREP ADEIAQALLN

NTYTLFNVP
Length:259
Mass (Da):28,909
Last modified:November 1, 1995 - v2
Checksum:i9BFB42FAA760DC67
GO

Sequence cautioni

The sequence AAA97274 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97274.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77331.2.
AP009048 Genomic DNA. Translation: BAE78367.1.
PIRiS56602.
RefSeqiWP_000563040.1. NZ_LN832404.1.
YP_026291.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC77331; AAC77331; b4378.
BAE78367; BAE78367; BAE78367.
GeneIDi2847741.
KEGGiecj:JW4341.
eco:b4378.
PATRICi32124368. VBIEscCol129921_4524.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97274.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77331.2.
AP009048 Genomic DNA. Translation: BAE78367.1.
PIRiS56602.
RefSeqiWP_000563040.1. NZ_LN832404.1.
YP_026291.2. NC_000913.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1ZZMX-ray1.80A1-259[»]
ProteinModelPortaliP39408.
SMRiP39408.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261644. 70 interactors.
DIPiDIP-12661N.
IntActiP39408. 4 interactors.
MINTiMINT-1227009.
STRINGi511145.b4378.

Proteomic databases

PaxDbiP39408.
PRIDEiP39408.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77331; AAC77331; b4378.
BAE78367; BAE78367; BAE78367.
GeneIDi2847741.
KEGGiecj:JW4341.
eco:b4378.
PATRICi32124368. VBIEscCol129921_4524.

Organism-specific databases

EchoBASEiEB2483.
EcoGeneiEG12598. yjjV.

Phylogenomic databases

eggNOGiENOG4105EYA. Bacteria.
COG0084. LUCA.
HOGENOMiHOG000201521.
InParanoidiP39408.
KOiK03424.
OMAiGVIHGFS.
PhylomeDBiP39408.

Enzyme and pathway databases

BioCyciEcoCyc:G7952-MONOMER.
ECOL316407:JW4341-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP39408.
PROiP39408.

Family and domain databases

InterProiIPR018228. DNase_TatD-rel_CS.
IPR032466. Metal_Hydrolase.
IPR001130. TatD_family.
[Graphical view]
PANTHERiPTHR10060. PTHR10060. 1 hit.
PfamiPF01026. TatD_DNase. 1 hit.
[Graphical view]
PIRSFiPIRSF005902. DNase_TatD. 1 hit.
SUPFAMiSSF51556. SSF51556. 1 hit.
PROSITEiPS01137. TATD_1. 1 hit.
PS01090. TATD_2. 1 hit.
PS01091. TATD_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJJV_ECOLI
AccessioniPrimary (citable) accession number: P39408
Secondary accession number(s): P78143, Q2M5T9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 124 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.