Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YjiR

Gene

yjiR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Pyridoxal phosphate

Enzyme and pathway databases

BioCyciEcoCyc:G7936-MONOMER.
ECOL316407:JW4303-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YjiR
Gene namesi
Name:yjiR
Ordered Locus Names:b4340, JW4303
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12579. yjiR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 470470Uncharacterized HTH-type transcriptional regulator YjiRPRO_0000050709Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei313 – 3131N6-(pyridoxal phosphate)lysineBy similarity

Proteomic databases

PaxDbiP39389.
PRIDEiP39389.

Interactioni

Protein-protein interaction databases

BioGridi4261620. 10 interactions.
IntActiP39389. 4 interactions.
STRINGi511145.b4340.

Structurei

3D structure databases

ProteinModelPortaliP39389.
SMRiP39389. Positions 4-466.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6969HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated
Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000133006.
InParanoidiP39389.
OMAiDMPGLYY.
PhylomeDBiP39389.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39389-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRYQHLATL LAERIEQGLY RHGEKLPSVR SLSQEHGVSI STVQQAYQTL
60 70 80 90 100
ETMKLITPQP RSGYFVAQRK AQPPVPPMTR PVQRPVEITQ WDQVLDMLEA
110 120 130 140 150
HSDSSIVPLS KSTPDVEAPS LKPLWRELSR VVQHNLQTVL GYDLLAGQRV
160 170 180 190 200
LREQIARLML DSGSVVTADD IIITSGCHNS MSLALMAVCK PGDIVAVESP
210 220 230 240 250
CYYGSMQMLR GMGVKVIEIP TDPETGISVE ALELALEQWP IKGIILVPNC
260 270 280 290 300
NNPLGFIMPD ARKRAVLSLA QRHDIVIFED DVYGELATEY PRPRTIHSWD
310 320 330 340 350
IDGRVLLCSS FSKSIAPGLR VGWVAPGRYH DKLMHMKYAI SSFNVPSTQM
360 370 380 390 400
AAATFVLEGH YHRHIRRMRQ IYQRNLALYT CWIREYFPCE ICITRPKGGF
410 420 430 440 450
LLWIELPEQV DMVCVARQLC RMKIQVAAGS IFSASGKYRN CLRINCALPL
460 470
SETYREALKQ IGEAVYRAME
Length:470
Mass (Da):53,047
Last modified:February 1, 1995 - v1
Checksum:i0C65DA4DC69A4FDA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97236.1.
U00096 Genomic DNA. Translation: AAC77296.1.
AP009048 Genomic DNA. Translation: BAE78332.1.
PIRiS56565.
RefSeqiNP_418760.1. NC_000913.3.
WP_000199300.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77296; AAC77296; b4340.
BAE78332; BAE78332; BAE78332.
GeneIDi949089.
KEGGiecj:JW4303.
eco:b4340.
PATRICi32124288. VBIEscCol129921_4487.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97236.1.
U00096 Genomic DNA. Translation: AAC77296.1.
AP009048 Genomic DNA. Translation: BAE78332.1.
PIRiS56565.
RefSeqiNP_418760.1. NC_000913.3.
WP_000199300.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39389.
SMRiP39389. Positions 4-466.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261620. 10 interactions.
IntActiP39389. 4 interactions.
STRINGi511145.b4340.

Proteomic databases

PaxDbiP39389.
PRIDEiP39389.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77296; AAC77296; b4340.
BAE78332; BAE78332; BAE78332.
GeneIDi949089.
KEGGiecj:JW4303.
eco:b4340.
PATRICi32124288. VBIEscCol129921_4487.

Organism-specific databases

EchoBASEiEB2466.
EcoGeneiEG12579. yjiR.

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000133006.
InParanoidiP39389.
OMAiDMPGLYY.
PhylomeDBiP39389.

Enzyme and pathway databases

BioCyciEcoCyc:G7936-MONOMER.
ECOL316407:JW4303-MONOMER.

Miscellaneous databases

PROiP39389.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJIR_ECOLI
AccessioniPrimary (citable) accession number: P39389
Secondary accession number(s): Q2M5X4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: September 7, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.