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Protein

Uncharacterized protein YjiN

Gene

yjiN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7933-MONOMER.
ECOL316407:JW4299-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YjiN
Gene namesi
Name:yjiN
Ordered Locus Names:b4336, JW4299
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12575. yjiN.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei13 – 3321HelicalSequence analysisAdd
BLAST
Transmembranei42 – 6221HelicalSequence analysisAdd
BLAST
Transmembranei403 – 42321HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 426426Uncharacterized protein YjiNPRO_0000169793Add
BLAST

Proteomic databases

PaxDbiP39385.
PRIDEiP39385.

Interactioni

Protein-protein interaction databases

BioGridi4262758. 7 interactions.
DIPiDIP-12640N.
IntActiP39385. 1 interaction.
STRINGi511145.b4336.

Structurei

3D structure databases

ProteinModelPortaliP39385.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4106BRA. Bacteria.
COG2733. LUCA.
HOGENOMiHOG000150757.
InParanoidiP39385.
OMAiWGPPIGR.
OrthoDBiEOG6SNDQT.
PhylomeDBiP39385.

Family and domain databases

InterProiIPR007383. DUF445.
[Graphical view]
PfamiPF04286. DUF445. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39385-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKLIELRRA KRLALSLLLI AAATFVVTLF LPPNFWVSGV KAIAEAAMVG
60 70 80 90 100
ALADWFAVVA LFRRVPIPII SRHTAIIPRN KDRIGENLGQ FVQEKFLDTQ
110 120 130 140 150
SLVALIRRHE PALLIGNWFS QPENARRVGQ HLLQIMSGFL ELTDDARIQR
160 170 180 190 200
LLKRAVHRAI DKVDLSGTSA LMLESMTKND RHQVLLDTLI AQLIALLQRD
210 220 230 240 250
KSRKFIAQQI VRWLESEHPL KAKILPTEWL GEHSAELVSD AVNSLLDDIS
260 270 280 290 300
RDRAHQIRHA FDRATFALID KLKNDPEMAA RADAVKSYLK EDEAFNRYLS
310 320 330 340 350
ELWGDLREWL KVDINSEDSR VKERIARAGQ WFGETLIADD ALRASLNGHL
360 370 380 390 400
EQAAHRVAPE FSAFLTRHIS DTVKSWDARD MSRQIELNIG KDLQFIRVNG
410 420
TLVGGCIGLI LYLLSQLPAL FPLGNF
Length:426
Mass (Da):48,242
Last modified:February 1, 1995 - v1
Checksum:iE885826ED210B58D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97232.1.
U00096 Genomic DNA. Translation: AAC77292.1.
AP009048 Genomic DNA. Translation: BAE78329.1.
PIRiS56561.
RefSeqiNP_418756.1. NC_000913.3.
WP_001037419.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77292; AAC77292; b4336.
BAE78329; BAE78329; BAE78329.
GeneIDi948860.
KEGGiecj:JW4299.
eco:b4336.
PATRICi32124278. VBIEscCol129921_4482.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97232.1.
U00096 Genomic DNA. Translation: AAC77292.1.
AP009048 Genomic DNA. Translation: BAE78329.1.
PIRiS56561.
RefSeqiNP_418756.1. NC_000913.3.
WP_001037419.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39385.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262758. 7 interactions.
DIPiDIP-12640N.
IntActiP39385. 1 interaction.
STRINGi511145.b4336.

Proteomic databases

PaxDbiP39385.
PRIDEiP39385.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77292; AAC77292; b4336.
BAE78329; BAE78329; BAE78329.
GeneIDi948860.
KEGGiecj:JW4299.
eco:b4336.
PATRICi32124278. VBIEscCol129921_4482.

Organism-specific databases

EchoBASEiEB2463.
EcoGeneiEG12575. yjiN.

Phylogenomic databases

eggNOGiENOG4106BRA. Bacteria.
COG2733. LUCA.
HOGENOMiHOG000150757.
InParanoidiP39385.
OMAiWGPPIGR.
OrthoDBiEOG6SNDQT.
PhylomeDBiP39385.

Enzyme and pathway databases

BioCyciEcoCyc:G7933-MONOMER.
ECOL316407:JW4299-MONOMER.

Miscellaneous databases

PROiP39385.

Family and domain databases

InterProiIPR007383. DUF445.
[Graphical view]
PfamiPF04286. DUF445. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYJIN_ECOLI
AccessioniPrimary (citable) accession number: P39385
Secondary accession number(s): Q2M5X7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: January 20, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.