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Protein

Putative sgc region transcriptional regulator

Gene

sgcR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Putative transcriptional regulator for the sgcREAQCX region.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi22 – 41H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7913-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative sgc region transcriptional regulator
Gene namesi
Name:sgcR
Synonyms:yjhJ
Ordered Locus Names:b4300, JW4262
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12552 sgcR

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000502671 – 260Putative sgc region transcriptional regulatorAdd BLAST260

Proteomic databases

PaxDbiP39361
PRIDEiP39361

Interactioni

Protein-protein interaction databases

BioGridi426097718 interactors.
DIPiDIP-10880N
IntActiP39361 1 interactor.
STRINGi316385.ECDH10B_4501

Structurei

3D structure databases

ProteinModelPortaliP39361
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 61HTH deoR-typePROSITE-ProRule annotationAdd BLAST57

Phylogenomic databases

eggNOGiENOG4108PQ7 Bacteria
COG1349 LUCA
HOGENOMiHOG000028629
OMAiRLIMPDP
PhylomeDBiP39361

Family and domain databases

InterProiView protein in InterPro
IPR014036 DeoR_C
IPR001034 DeoR_HTH
IPR037171 NagB/RpiA_transferase-like
IPR018356 Tscrpt_reg_HTH_DeoR_CS
PfamiView protein in Pfam
PF00455 DeoRC, 1 hit
PF08220 HTH_DeoR, 1 hit
SMARTiView protein in SMART
SM00420 HTH_DEOR, 1 hit
SUPFAMiSSF100950 SSF100950, 1 hit
PROSITEiView protein in PROSITE
PS00894 HTH_DEOR_1, 1 hit
PS51000 HTH_DEOR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P39361-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQQRPDRIK QMLHYLWQHR HLSTQQAMEL FGYAEATVRR DFQYIVNQYP
60 70 80 90 100
GMIRGHGCLD FDDSTDDKEY VFDVKRTLQS VAKREIAALA RTMIKDGDCF
110 120 130 140 150
FLDSGSTCLE LAKCLADARV KVICNDIKIA NELGCFPHVE SYIIGGLIRP
160 170 180 190 200
GYFSVGESLA LEMINAFSVE RAFISCDALS LETGITNATM FEVGVKTRII
210 220 230 240 250
QRSREVILMA DHSKFDAVEP HAVATLSCIK TIISDSGLPE TIAQRYQRAG
260
CQLFLPHSIK
Length:260
Mass (Da):29,268
Last modified:February 1, 1995 - v1
Checksum:i3DF397A5EFFCD5F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA Translation: AAA97196.1
U00096 Genomic DNA Translation: AAC77256.1
AP009048 Genomic DNA Translation: BAE78291.1
PIRiS56525
RefSeqiNP_418720.1, NC_000913.3
WP_000082780.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC77256; AAC77256; b4300
BAE78291; BAE78291; BAE78291
GeneIDi946830
KEGGiecj:JW4262
eco:b4300
PATRICifig|1411691.4.peg.2397

Similar proteinsi

Entry informationi

Entry nameiSGCR_ECOLI
AccessioniPrimary (citable) accession number: P39361
Secondary accession number(s): Q2M615
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: March 28, 2018
This is version 124 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome