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Protein

Uncharacterized HTH-type transcriptional regulator YjhI

Gene

yjhI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi27 – 46H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • negative regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7912-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YjhI
Gene namesi
Name:yjhI
Ordered Locus Names:b4299, JW4261
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12551 yjhI

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002017731 – 262Uncharacterized HTH-type transcriptional regulator YjhIAdd BLAST262

Proteomic databases

PaxDbiP39360
PRIDEiP39360

Interactioni

Protein-protein interaction databases

BioGridi4260971, 12 interactors
IntActiP39360, 9 interactors
STRINGi316385.ECDH10B_4500

Structurei

3D structure databases

ProteinModelPortaliP39360
SMRiP39360
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 66HTH iclR-typePROSITE-ProRule annotationAdd BLAST61
Domaini81 – 251IclR-EDPROSITE-ProRule annotationAdd BLAST171

Phylogenomic databases

eggNOGiENOG4106P37 Bacteria
ENOG410XNU2 LUCA
HOGENOMiHOG000107041
InParanoidiP39360
OMAiAPIRGYG
PhylomeDBiP39360

Family and domain databases

Gene3Di1.10.10.10, 1 hit
3.30.450.40, 1 hit
InterProiView protein in InterPro
IPR029016 GAF-like_dom_sf
IPR014757 Tscrpt_reg_IclR_C
IPR005471 Tscrpt_reg_IclR_N
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF01614 IclR, 1 hit
SMARTiView protein in SMART
SM00346 HTH_ICLR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51077 HTH_ICLR, 1 hit
PS51078 ICLR_ED, 1 hit

Sequencei

Sequence statusi: Complete.

P39360-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRKGCNSLV RAEKILTHIA WVGMASYMEL LNKFQYPKSS LLNLLNVMVD
60 70 80 90 100
CGFLIKNKNG YYSLGIKNYE LGCQALHRQN IFEVTKRPMQ ELSLKSGLVC
110 120 130 140 150
HLGAMESISA IYLDKIESPD SVPTSKSWIG KKLELHITAL GKALLAWKTR
160 170 180 190 200
EELDYFLEAL TLTPHTRNTF TDKKLFLEEL QKTRLRGWAI DNEESTYGAV
210 220 230 240 250
CLSMPVFNMY NRVNYAISLS GDPVVYSGNK IDSYLELLRK CAEQISYGLG
260
YRNENEHLRK GN
Length:262
Mass (Da):29,877
Last modified:February 1, 1995 - v1
Checksum:i5597EAC9E0B946C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA Translation: AAA97195.1
U00096 Genomic DNA Translation: AAC77255.1
AP009048 Genomic DNA Translation: BAE78290.1
PIRiS56524
RefSeqiNP_418719.1, NC_000913.3
WP_000251798.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC77255; AAC77255; b4299
BAE78290; BAE78290; BAE78290
GeneIDi949100
KEGGiecj:JW4261
eco:b4299
PATRICifig|1411691.4.peg.2398

Entry informationi

Entry nameiYJHI_ECOLI
AccessioniPrimary (citable) accession number: P39360
Secondary accession number(s): Q2M616
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: March 28, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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