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Protein

Uncharacterized oxidoreductase YjhC

Gene

yjhC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • oxidation-reduction process Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciEcoCyc:G7901-MONOMER.
ECOL316407:JW5769-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized oxidoreductase YjhC (EC:1.-.-.-)
Gene namesi
Name:yjhC
Ordered Locus Names:b4280, JW5769
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12545. yjhC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 372372Uncharacterized oxidoreductase YjhCPRO_0000091781Add
BLAST

Proteomic databases

PaxDbiP39353.
PRIDEiP39353.

Interactioni

Protein-protein interaction databases

BioGridi4261650. 8 interactions.
DIPiDIP-12617N.
IntActiP39353. 2 interactions.
MINTiMINT-1283412.
STRINGi511145.b4280.

Structurei

3D structure databases

ProteinModelPortaliP39353.
SMRiP39353. Positions 2-366.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Gfo/Idh/MocA family.Curated

Phylogenomic databases

eggNOGiENOG4107RJ5. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000244297.
InParanoidiP39353.
OMAiFLIHETQ.
OrthoDBiEOG66MQKQ.
PhylomeDBiP39353.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR004104. OxRdtase_C.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
PF02894. GFO_IDH_MocA_C. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

P39353-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINYGVVGVG YFGAELARFM NMHDNAKITC VYDPENGENI ARELQCINMS
60 70 80 90 100
SLDALVSSKL VDCVIVATPN YLHKEPVIKA AKNKKHVFCE KPIALSYEDC
110 120 130 140 150
VDMVKACKEA GVTFMAGHIM NFFNGVQYAR KLIKEGVIGE ILSCHTKRNG
160 170 180 190 200
WENKQERLSW KKMKEQSGGH LYHHIHELDC VQHLLGEIPE TVTMIGGNLA
210 220 230 240 250
HSGPGFGNED DMLFMTLEFP SGKLATLEWG SAFNWPEHYV IINGTKGSIK
260 270 280 290 300
IDMQETAGSL RIGGQTKHFL VHETQEEDDD RRKGNMTSEM DGAIAYGHPG
310 320 330 340 350
KKTPLWLASL IRKETLFLHN ILCGAKPEED YIDLLNGEAA MSAIATADAA
360 370
TLSRSQDRKV KISEIIKHTS VM
Length:372
Mass (Da):41,384
Last modified:December 15, 1998 - v2
Checksum:i34B2E535EADC2ABE
GO

Sequence cautioni

The sequence AAA97176.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97176.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77236.2.
AP009048 Genomic DNA. Translation: BAE78274.1.
PIRiS56505.
RefSeqiNP_418700.2. NC_000913.3.
WP_000611568.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77236; AAC77236; b4280.
BAE78274; BAE78274; BAE78274.
GeneIDi948808.
KEGGiecj:JW5769.
eco:b4280.
PATRICi32124133. VBIEscCol129921_4410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97176.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77236.2.
AP009048 Genomic DNA. Translation: BAE78274.1.
PIRiS56505.
RefSeqiNP_418700.2. NC_000913.3.
WP_000611568.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39353.
SMRiP39353. Positions 2-366.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261650. 8 interactions.
DIPiDIP-12617N.
IntActiP39353. 2 interactions.
MINTiMINT-1283412.
STRINGi511145.b4280.

Proteomic databases

PaxDbiP39353.
PRIDEiP39353.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77236; AAC77236; b4280.
BAE78274; BAE78274; BAE78274.
GeneIDi948808.
KEGGiecj:JW5769.
eco:b4280.
PATRICi32124133. VBIEscCol129921_4410.

Organism-specific databases

EchoBASEiEB2433.
EcoGeneiEG12545. yjhC.

Phylogenomic databases

eggNOGiENOG4107RJ5. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000244297.
InParanoidiP39353.
OMAiFLIHETQ.
OrthoDBiEOG66MQKQ.
PhylomeDBiP39353.

Enzyme and pathway databases

BioCyciEcoCyc:G7901-MONOMER.
ECOL316407:JW5769-MONOMER.

Miscellaneous databases

PROiP39353.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR004104. OxRdtase_C.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
PF02894. GFO_IDH_MocA_C. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYJHC_ECOLI
AccessioniPrimary (citable) accession number: P39353
Secondary accession number(s): Q2M632
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 15, 1998
Last modified: January 20, 2016
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.