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Protein

Putative metabolite transport protein YjhB

Gene

yjhB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YJHB-MONOMER.
ECOL316407:JW5768-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative metabolite transport protein YjhB
Gene namesi
Name:yjhB
Ordered Locus Names:b4279, JW5768
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12544. yjhB.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2020CytoplasmicSequence analysisAdd
BLAST
Transmembranei21 – 4121Helical; Name=1Sequence analysisAdd
BLAST
Topological domaini42 – 5312PeriplasmicSequence analysisAdd
BLAST
Transmembranei54 – 7421Helical; Name=2Sequence analysisAdd
BLAST
Topological domaini75 – 806CytoplasmicSequence analysis
Transmembranei81 – 10121Helical; Name=3Sequence analysisAdd
BLAST
Topological domaini102 – 1021PeriplasmicSequence analysis
Transmembranei103 – 12321Helical; Name=4Sequence analysisAdd
BLAST
Topological domaini124 – 13916CytoplasmicSequence analysisAdd
BLAST
Transmembranei140 – 16021Helical; Name=5Sequence analysisAdd
BLAST
Topological domaini161 – 1644PeriplasmicSequence analysis
Transmembranei165 – 18521Helical; Name=6Sequence analysisAdd
BLAST
Topological domaini186 – 21429CytoplasmicSequence analysisAdd
BLAST
Transmembranei215 – 23521Helical; Name=7Sequence analysisAdd
BLAST
Topological domaini236 – 25015PeriplasmicSequence analysisAdd
BLAST
Transmembranei251 – 27121Helical; Name=8Sequence analysisAdd
BLAST
Topological domaini272 – 28211CytoplasmicSequence analysisAdd
BLAST
Transmembranei283 – 30321Helical; Name=9Sequence analysisAdd
BLAST
Topological domaini304 – 3074PeriplasmicSequence analysis
Transmembranei308 – 32821Helical; Name=10Sequence analysisAdd
BLAST
Topological domaini329 – 34416CytoplasmicSequence analysisAdd
BLAST
Transmembranei345 – 36521Helical; Name=11Sequence analysisAdd
BLAST
Topological domaini366 – 3716PeriplasmicSequence analysis
Transmembranei372 – 39221Helical; Name=12Sequence analysisAdd
BLAST
Topological domaini393 – 40513CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 405405Putative metabolite transport protein YjhBPRO_0000050487Add
BLAST

Proteomic databases

PaxDbiP39352.

Interactioni

Protein-protein interaction databases

BioGridi4262721. 206 interactions.
STRINGi511145.b4279.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4J09X-ray1.90B101-106[»]
ProteinModelPortaliP39352.
SMRiP39352. Positions 38-381.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105JHE. Bacteria.
ENOG410XSSD. LUCA.
HOGENOMiHOG000074791.
InParanoidiP39352.
OMAiCFPESKQ.
OrthoDBiEOG64JFK2.
PhylomeDBiP39352.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39352-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAWYKQVN PPQRKALFSA WLGYVFDGFD FMMIFYILHI IKADLGITDI
60 70 80 90 100
QATLIGTVAF IARPIGGGFF GAMADKYGRK PMMMWAIFIY SVGTGLSGIA
110 120 130 140 150
TNLYMLAVCR FIVGLGMSGE YACASTYAVE SWPKNLQSKA SAFLVSGFSV
160 170 180 190 200
GNIIAAQIIP QFAEVYGWRN SFFIGLLPVL LVLWIRKSAP ESQEWIEDKY
210 220 230 240 250
KDKSTFLSVF RKPHLSISMI VFLVCFCLFG ANWPINGLLP SYLADNGVNT
260 270 280 290 300
VVISTLMTIA GLGTLTGTIF FGFVGDKIGV KKAFVVGLIT SFIFLCPLFF
310 320 330 340 350
ISVKNSSLIG LCLFGLMFTN LGIAGLVPKF IYDYFPTKLR GLGTGLIYNL
360 370 380 390 400
GATGGMAAPV LATYISGYYG LGVSLFIVTV AFSALLILLV GFDIPGKIYK

LSVAK
Length:405
Mass (Da):44,104
Last modified:December 15, 1998 - v2
Checksum:iA8F45D9298EB09EE
GO

Sequence cautioni

The sequence AAA97175.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97175.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77235.2.
AP009048 Genomic DNA. Translation: BAE78273.1.
PIRiS56504.
RefSeqiNP_418699.4. NC_000913.3.
WP_000179691.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77235; AAC77235; b4279.
BAE78273; BAE78273; BAE78273.
GeneIDi948807.
KEGGiecj:JW5768.
eco:b4279.
PATRICi32124131. VBIEscCol129921_4409.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97175.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77235.2.
AP009048 Genomic DNA. Translation: BAE78273.1.
PIRiS56504.
RefSeqiNP_418699.4. NC_000913.3.
WP_000179691.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4J09X-ray1.90B101-106[»]
ProteinModelPortaliP39352.
SMRiP39352. Positions 38-381.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262721. 206 interactions.
STRINGi511145.b4279.

Proteomic databases

PaxDbiP39352.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77235; AAC77235; b4279.
BAE78273; BAE78273; BAE78273.
GeneIDi948807.
KEGGiecj:JW5768.
eco:b4279.
PATRICi32124131. VBIEscCol129921_4409.

Organism-specific databases

EchoBASEiEB2432.
EcoGeneiEG12544. yjhB.

Phylogenomic databases

eggNOGiENOG4105JHE. Bacteria.
ENOG410XSSD. LUCA.
HOGENOMiHOG000074791.
InParanoidiP39352.
OMAiCFPESKQ.
OrthoDBiEOG64JFK2.
PhylomeDBiP39352.

Enzyme and pathway databases

BioCyciEcoCyc:YJHB-MONOMER.
ECOL316407:JW5768-MONOMER.

Miscellaneous databases

PROiP39352.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYJHB_ECOLI
AccessioniPrimary (citable) accession number: P39352
Secondary accession number(s): Q2M633
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 15, 1998
Last modified: January 20, 2016
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.