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Protein

Putative metabolite transport protein YjhB

Gene

yjhB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YJHB-MONOMER.
ECOL316407:JW5768-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative metabolite transport protein YjhB
Gene namesi
Name:yjhB
Ordered Locus Names:b4279, JW5768
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12544. yjhB.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 20CytoplasmicSequence analysisAdd BLAST20
Transmembranei21 – 41Helical; Name=1Sequence analysisAdd BLAST21
Topological domaini42 – 53PeriplasmicSequence analysisAdd BLAST12
Transmembranei54 – 74Helical; Name=2Sequence analysisAdd BLAST21
Topological domaini75 – 80CytoplasmicSequence analysis6
Transmembranei81 – 101Helical; Name=3Sequence analysisAdd BLAST21
Topological domaini102PeriplasmicSequence analysis1
Transmembranei103 – 123Helical; Name=4Sequence analysisAdd BLAST21
Topological domaini124 – 139CytoplasmicSequence analysisAdd BLAST16
Transmembranei140 – 160Helical; Name=5Sequence analysisAdd BLAST21
Topological domaini161 – 164PeriplasmicSequence analysis4
Transmembranei165 – 185Helical; Name=6Sequence analysisAdd BLAST21
Topological domaini186 – 214CytoplasmicSequence analysisAdd BLAST29
Transmembranei215 – 235Helical; Name=7Sequence analysisAdd BLAST21
Topological domaini236 – 250PeriplasmicSequence analysisAdd BLAST15
Transmembranei251 – 271Helical; Name=8Sequence analysisAdd BLAST21
Topological domaini272 – 282CytoplasmicSequence analysisAdd BLAST11
Transmembranei283 – 303Helical; Name=9Sequence analysisAdd BLAST21
Topological domaini304 – 307PeriplasmicSequence analysis4
Transmembranei308 – 328Helical; Name=10Sequence analysisAdd BLAST21
Topological domaini329 – 344CytoplasmicSequence analysisAdd BLAST16
Transmembranei345 – 365Helical; Name=11Sequence analysisAdd BLAST21
Topological domaini366 – 371PeriplasmicSequence analysis6
Transmembranei372 – 392Helical; Name=12Sequence analysisAdd BLAST21
Topological domaini393 – 405CytoplasmicSequence analysisAdd BLAST13

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000504871 – 405Putative metabolite transport protein YjhBAdd BLAST405

Proteomic databases

PaxDbiP39352.
PRIDEiP39352.

Interactioni

Protein-protein interaction databases

BioGridi4262721. 206 interactors.
STRINGi511145.b4279.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4J09X-ray1.90B101-106[»]
ProteinModelPortaliP39352.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105JHE. Bacteria.
ENOG410XSSD. LUCA.
HOGENOMiHOG000074791.
InParanoidiP39352.
OMAiWDFFAVS.
PhylomeDBiP39352.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39352-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAWYKQVN PPQRKALFSA WLGYVFDGFD FMMIFYILHI IKADLGITDI
60 70 80 90 100
QATLIGTVAF IARPIGGGFF GAMADKYGRK PMMMWAIFIY SVGTGLSGIA
110 120 130 140 150
TNLYMLAVCR FIVGLGMSGE YACASTYAVE SWPKNLQSKA SAFLVSGFSV
160 170 180 190 200
GNIIAAQIIP QFAEVYGWRN SFFIGLLPVL LVLWIRKSAP ESQEWIEDKY
210 220 230 240 250
KDKSTFLSVF RKPHLSISMI VFLVCFCLFG ANWPINGLLP SYLADNGVNT
260 270 280 290 300
VVISTLMTIA GLGTLTGTIF FGFVGDKIGV KKAFVVGLIT SFIFLCPLFF
310 320 330 340 350
ISVKNSSLIG LCLFGLMFTN LGIAGLVPKF IYDYFPTKLR GLGTGLIYNL
360 370 380 390 400
GATGGMAAPV LATYISGYYG LGVSLFIVTV AFSALLILLV GFDIPGKIYK

LSVAK
Length:405
Mass (Da):44,104
Last modified:December 15, 1998 - v2
Checksum:iA8F45D9298EB09EE
GO

Sequence cautioni

The sequence AAA97175 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97175.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77235.2.
AP009048 Genomic DNA. Translation: BAE78273.1.
PIRiS56504.
RefSeqiNP_418699.4. NC_000913.3.
WP_000179691.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77235; AAC77235; b4279.
BAE78273; BAE78273; BAE78273.
GeneIDi948807.
KEGGiecj:JW5768.
eco:b4279.
PATRICi32124131. VBIEscCol129921_4409.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97175.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77235.2.
AP009048 Genomic DNA. Translation: BAE78273.1.
PIRiS56504.
RefSeqiNP_418699.4. NC_000913.3.
WP_000179691.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4J09X-ray1.90B101-106[»]
ProteinModelPortaliP39352.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262721. 206 interactors.
STRINGi511145.b4279.

Proteomic databases

PaxDbiP39352.
PRIDEiP39352.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77235; AAC77235; b4279.
BAE78273; BAE78273; BAE78273.
GeneIDi948807.
KEGGiecj:JW5768.
eco:b4279.
PATRICi32124131. VBIEscCol129921_4409.

Organism-specific databases

EchoBASEiEB2432.
EcoGeneiEG12544. yjhB.

Phylogenomic databases

eggNOGiENOG4105JHE. Bacteria.
ENOG410XSSD. LUCA.
HOGENOMiHOG000074791.
InParanoidiP39352.
OMAiWDFFAVS.
PhylomeDBiP39352.

Enzyme and pathway databases

BioCyciEcoCyc:YJHB-MONOMER.
ECOL316407:JW5768-MONOMER.

Miscellaneous databases

PROiP39352.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJHB_ECOLI
AccessioniPrimary (citable) accession number: P39352
Secondary accession number(s): Q2M633
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 15, 1998
Last modified: November 30, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.