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Protein

Inner membrane protein YjgN

Gene

yjgN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7887-MONOMER.
ECOL316407:JW5759-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YjgN
Gene namesi
Name:yjgN
Ordered Locus Names:b4257, JW5759
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12533. yjgN.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 24CytoplasmicSequence analysisAdd BLAST24
Transmembranei25 – 45HelicalSequence analysisAdd BLAST21
Topological domaini46 – 73PeriplasmicSequence analysisAdd BLAST28
Transmembranei74 – 94HelicalSequence analysisAdd BLAST21
Topological domaini95CytoplasmicSequence analysis1
Transmembranei96 – 116HelicalSequence analysisAdd BLAST21
Topological domaini117 – 142PeriplasmicSequence analysisAdd BLAST26
Transmembranei143 – 163HelicalSequence analysisAdd BLAST21
Topological domaini164 – 175CytoplasmicSequence analysisAdd BLAST12
Transmembranei176 – 196HelicalSequence analysisAdd BLAST21
Topological domaini197 – 228PeriplasmicSequence analysisAdd BLAST32
Transmembranei229 – 249HelicalSequence analysisAdd BLAST21
Topological domaini250 – 278CytoplasmicSequence analysisAdd BLAST29
Transmembranei279 – 299HelicalSequence analysisAdd BLAST21
Topological domaini300 – 333PeriplasmicSequence analysisAdd BLAST34
Transmembranei334 – 354HelicalSequence analysisAdd BLAST21
Topological domaini355 – 398CytoplasmicSequence analysisAdd BLAST44

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001697681 – 398Inner membrane protein YjgNAdd BLAST398

Proteomic databases

PaxDbiP39338.
PRIDEiP39338.

Interactioni

Protein-protein interaction databases

BioGridi4263245. 4 interactors.
STRINGi511145.b4257.

Structurei

3D structure databases

ProteinModelPortaliP39338.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108M3P. Bacteria.
COG4269. LUCA.
HOGENOMiHOG000127441.
OMAiLRAWWVM.

Family and domain databases

InterProiIPR010295. DUF898.
[Graphical view]
PfamiPF05987. DUF898. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39338-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQVINEMDV PSHSFVFHGT GERYFLICVV NVLLTIITLG IYLPWALMKC
60 70 80 90 100
KRYLYANMEV NGQRFSYGIT GGNVFVSCLF FVFFYFAILM TVSADMPLVG
110 120 130 140 150
CVLTLLLLVL LIFMAAKGLR HQALMTSLNG VRFSFNCSMK GFWWVTFFLP
160 170 180 190 200
ILMAIGMGTV FFISTKMLPA NSSSSVIISM VLMAIVGIVS IGIFNGTLYS
210 220 230 240 250
LVMSFLWSNT SFGIHRFKVK LDTTYCIKYA ILAFLALLPF LAVAGYIIFD
260 270 280 290 300
QILNAYDSSV YANDDIENLQ QFMEMQRKMI IAQLIYYFGI AVSTSYLTVS
310 320 330 340 350
LRNHFMSNLS LNDGRIRFRL TLTYHGMLYR MCALVVISGI TGGLAYPLLK
360 370 380 390
IWMIDWQAKN TYLLGDLDDL PLINKEEQPD KGFLASISRG VMPSLPFL
Length:398
Mass (Da):44,900
Last modified:October 11, 2004 - v5
Checksum:i7F78F19C29E49342
GO

Sequence cautioni

The sequence AAA97154 differs from that shown. Reason: Frameshift at positions 10, 16, 96 and 199.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97153.1. Frameshift.
U14003 Genomic DNA. Translation: AAA97154.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48246.1.
AP009048 Genomic DNA. Translation: BAE78254.1.
PIRiD65238.
S56482.
RefSeqiWP_000079634.1. NZ_LN832404.1.
YP_026288.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48246; AAT48246; b4257.
BAE78254; BAE78254; BAE78254.
GeneIDi948784.
KEGGiecj:JW5759.
eco:b4257.
PATRICi32124085. VBIEscCol129921_4387.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97153.1. Frameshift.
U14003 Genomic DNA. Translation: AAA97154.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48246.1.
AP009048 Genomic DNA. Translation: BAE78254.1.
PIRiD65238.
S56482.
RefSeqiWP_000079634.1. NZ_LN832404.1.
YP_026288.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP39338.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263245. 4 interactors.
STRINGi511145.b4257.

Proteomic databases

PaxDbiP39338.
PRIDEiP39338.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48246; AAT48246; b4257.
BAE78254; BAE78254; BAE78254.
GeneIDi948784.
KEGGiecj:JW5759.
eco:b4257.
PATRICi32124085. VBIEscCol129921_4387.

Organism-specific databases

EchoBASEiEB2423.
EcoGeneiEG12533. yjgN.

Phylogenomic databases

eggNOGiENOG4108M3P. Bacteria.
COG4269. LUCA.
HOGENOMiHOG000127441.
OMAiLRAWWVM.

Enzyme and pathway databases

BioCyciEcoCyc:G7887-MONOMER.
ECOL316407:JW5759-MONOMER.

Miscellaneous databases

PROiP39338.

Family and domain databases

InterProiIPR010295. DUF898.
[Graphical view]
PfamiPF05987. DUF898. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJGN_ECOLI
AccessioniPrimary (citable) accession number: P39338
Secondary accession number(s): P39339
, P76811, Q2M652, Q6BEW8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 105 of the entry and version 5 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.