Reviewed, UniProtKB/Swiss-Prot P39332 (YJGH_ECOLI)

Names and origin

Protein names

Recommended name:
    UPF0076 protein yjgH

Gene names

Name:	yjgH
Ordered Locus Names:	b4248, JW4206

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	131 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the UPF0076 (UK114) family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
pta	P0A9M8	1	EBI-561380,EBI-555015

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 131

131

UPF0076 protein yjgH

PRO_0000170325

Secondary structure

1

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131

Helix Strand Turn

Details...

Beta strand

5 – 7

3

Turn

14 – 20

7

Beta strand

23 – 27

5

Beta strand

30 – 36

7

Helix

49 – 65

17

Turn

66 – 68

3

Helix

71 – 73

3

Beta strand

74 – 83

10

Helix

84 – 86

3

Helix

88 – 98

11

Beta strand

101 – 103

3

Beta strand

108 – 111

4

Beta strand

113 – 115

3

Beta strand

119 – 127

9

Sequences

	Sequence		Length	Mass (Da)
	P39332-1 [UniParc]. Last modified February 1, 1995. Version 1. Checksum: 343A68BFAE3D0849	FASTA	131	14,590
	10 20 30 40 50 60 MVERTAVFPA GRHSLYAEHR YSAAIRSGDL LFVSGQVGSR EDGTPEPDFQ QQVRLAFDNL 70 80 90 100 110 120 HATLAAAGCT FDDIIDVTSF HTDPENQFED IMTVKNEIFS APPYPNWTAV GVTWLAGFDF 130 EIKVIARIPE Q

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes." Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R. Nucleic Acids Res. 23:2105-2119(1995) [PubMed: 7610040] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"The 2.5A crystal structure of protein yjgH from E. coli." Midwest center for structural genomics (MCSG) Submitted (JAN-2005) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 1-131.

Cross-references

Sequence databases

EMBLGenBankDDBJ

U14003 Genomic DNA. Translation: AAA97145.1.
U00096 Genomic DNA. Translation: AAC77205.1.
AP009048 Genomic DNA. Translation: BAE78246.1.

PIR

S56474.

RefSeq

AP_004745.1.
NP_418669.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1PF5	X-ray	2.50	A	1-131	[»]

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-12603N.

IntAct

P39332. 1 interaction.

STRING

P39332.

Genome annotation databases

GeneID

948769.

GenomeReviews

Gene locus JW4206 in contig AP009048_GR.
Gene locus b4248 in contig U00096_GR.

KEGG

ecj:JW4206.
eco:b4248.

Organism-specific databases

EchoBASE

EB2417.

EcoGene

EG12527. yjgH.

CMR

Search...

Phylogenomic databases

HOGENOM

HBG695954.

OMA

GVNWLAG.

Enzyme and pathway databases

BioCyc

EcoCyc:G7879-MON.
ECOL168927:B4248-MON.

Gene expression databases

Genevestigator

P39332.

Family and domain databases

InterPro

IPR013813. Endoribo_LPSP/chorism_mut-like.
IPR006175. EndoRNase_L-PSP.
[Graphical view]

Gene3D

G3DSA:3.30.1330.40. Endoribo_LPSP/chorism_mut-like. 1 hit.

PANTHER

PTHR11803. Endoribon_LPSP. 1 hit.

Pfam

PF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]

PROSITE

PS01094. UPF0076. False negative.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

YJGH_ECOLI

Accession

Primary (citable) accession number: P39332
Secondary accession number(s): Q2M660

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1995
Last sequence update:	February 1, 1995
Last modified:	December 15, 2009
This is version 75 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)