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Protein

RutC family protein YjgH

Gene

yjgH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7879-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
RutC family protein YjgH
Gene namesi
Name:yjgH
Ordered Locus Names:b4248, JW4206
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12527 yjgH

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001703251 – 131RutC family protein YjgHAdd BLAST131

Proteomic databases

PaxDbiP39332
PRIDEiP39332

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
ptaP0A9M82EBI-561380,EBI-555015

Protein-protein interaction databases

BioGridi4262944, 22 interactors
DIPiDIP-12603N
IntActiP39332, 1 interactor
STRINGi316385.ECDH10B_4442

Structurei

Secondary structure

1131
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 7Combined sources3
Turni14 – 20Combined sources7
Beta strandi23 – 27Combined sources5
Beta strandi30 – 36Combined sources7
Helixi49 – 65Combined sources17
Turni66 – 68Combined sources3
Helixi71 – 73Combined sources3
Beta strandi74 – 83Combined sources10
Helixi84 – 86Combined sources3
Helixi88 – 98Combined sources11
Beta strandi101 – 103Combined sources3
Beta strandi108 – 111Combined sources4
Beta strandi119 – 127Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1PF5X-ray2.50A1-131[»]
ProteinModelPortaliP39332
SMRiP39332
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP39332

Family & Domainsi

Sequence similaritiesi

Belongs to the RutC family.Curated

Phylogenomic databases

eggNOGiENOG4108UQ8 Bacteria
COG0251 LUCA
HOGENOMiHOG000267215
InParanoidiP39332
OMAiRHALYEE
PhylomeDBiP39332

Family and domain databases

CDDicd02198 YjgH_like, 1 hit
Gene3Di3.30.1330.40, 1 hit
InterProiView protein in InterPro
IPR035959 RutC-like_sf
IPR006175 YjgF/YER057c/UK114
IPR038743 YjgH_like
PANTHERiPTHR11803 PTHR11803, 1 hit
PfamiView protein in Pfam
PF01042 Ribonuc_L-PSP, 1 hit
SUPFAMiSSF55298 SSF55298, 1 hit

Sequencei

Sequence statusi: Complete.

P39332-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVERTAVFPA GRHSLYAEHR YSAAIRSGDL LFVSGQVGSR EDGTPEPDFQ
60 70 80 90 100
QQVRLAFDNL HATLAAAGCT FDDIIDVTSF HTDPENQFED IMTVKNEIFS
110 120 130
APPYPNWTAV GVTWLAGFDF EIKVIARIPE Q
Length:131
Mass (Da):14,590
Last modified:February 1, 1995 - v1
Checksum:i343A68BFAE3D0849
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA Translation: AAA97145.1
U00096 Genomic DNA Translation: AAC77205.1
AP009048 Genomic DNA Translation: BAE78246.1
PIRiS56474
RefSeqiNP_418669.1, NC_000913.3
WP_000230281.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC77205; AAC77205; b4248
BAE78246; BAE78246; BAE78246
GeneIDi948769
KEGGiecj:JW4206
eco:b4248
PATRICifig|511145.12.peg.4379

Similar proteinsi

Entry informationi

Entry nameiYJGH_ECOLI
AccessioniPrimary (citable) accession number: P39332
Secondary accession number(s): Q2M660
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: May 23, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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