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Protein

RutC family protein YjgH

Gene

yjgH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7879-MONOMER.
ECOL316407:JW4206-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RutC family protein YjgH
Gene namesi
Name:yjgH
Ordered Locus Names:b4248, JW4206
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12527. yjgH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001703251 – 131RutC family protein YjgHAdd BLAST131

Proteomic databases

PaxDbiP39332.
PRIDEiP39332.

Interactioni

Protein-protein interaction databases

BioGridi4262944. 4 interactors.
DIPiDIP-12603N.
IntActiP39332. 1 interactor.
MINTiMINT-1305302.
STRINGi511145.b4248.

Structurei

Secondary structure

1131
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 7Combined sources3
Turni14 – 20Combined sources7
Beta strandi23 – 27Combined sources5
Beta strandi30 – 36Combined sources7
Helixi49 – 65Combined sources17
Turni66 – 68Combined sources3
Helixi71 – 73Combined sources3
Beta strandi74 – 83Combined sources10
Helixi84 – 86Combined sources3
Helixi88 – 98Combined sources11
Beta strandi101 – 103Combined sources3
Beta strandi108 – 111Combined sources4
Beta strandi119 – 127Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1PF5X-ray2.50A1-131[»]
ProteinModelPortaliP39332.
SMRiP39332.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP39332.

Family & Domainsi

Sequence similaritiesi

Belongs to the RutC family.Curated

Phylogenomic databases

eggNOGiENOG4108UQ8. Bacteria.
COG0251. LUCA.
HOGENOMiHOG000267215.
InParanoidiP39332.
OMAiVGVNWLA.
PhylomeDBiP39332.

Family and domain databases

Gene3Di3.30.1330.40. 1 hit.
InterProiIPR013813. Endoribo_LPSP/chorism_mut-like.
IPR006175. YjgF/YER057c/UK114.
[Graphical view]
PANTHERiPTHR11803. PTHR11803. 1 hit.
PfamiPF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]
SUPFAMiSSF55298. SSF55298. 1 hit.

Sequencei

Sequence statusi: Complete.

P39332-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVERTAVFPA GRHSLYAEHR YSAAIRSGDL LFVSGQVGSR EDGTPEPDFQ
60 70 80 90 100
QQVRLAFDNL HATLAAAGCT FDDIIDVTSF HTDPENQFED IMTVKNEIFS
110 120 130
APPYPNWTAV GVTWLAGFDF EIKVIARIPE Q
Length:131
Mass (Da):14,590
Last modified:February 1, 1995 - v1
Checksum:i343A68BFAE3D0849
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97145.1.
U00096 Genomic DNA. Translation: AAC77205.1.
AP009048 Genomic DNA. Translation: BAE78246.1.
PIRiS56474.
RefSeqiNP_418669.1. NC_000913.3.
WP_000230281.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77205; AAC77205; b4248.
BAE78246; BAE78246; BAE78246.
GeneIDi948769.
KEGGiecj:JW4206.
eco:b4248.
PATRICi32124069. VBIEscCol129921_4379.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97145.1.
U00096 Genomic DNA. Translation: AAC77205.1.
AP009048 Genomic DNA. Translation: BAE78246.1.
PIRiS56474.
RefSeqiNP_418669.1. NC_000913.3.
WP_000230281.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1PF5X-ray2.50A1-131[»]
ProteinModelPortaliP39332.
SMRiP39332.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262944. 4 interactors.
DIPiDIP-12603N.
IntActiP39332. 1 interactor.
MINTiMINT-1305302.
STRINGi511145.b4248.

Proteomic databases

PaxDbiP39332.
PRIDEiP39332.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77205; AAC77205; b4248.
BAE78246; BAE78246; BAE78246.
GeneIDi948769.
KEGGiecj:JW4206.
eco:b4248.
PATRICi32124069. VBIEscCol129921_4379.

Organism-specific databases

EchoBASEiEB2417.
EcoGeneiEG12527. yjgH.

Phylogenomic databases

eggNOGiENOG4108UQ8. Bacteria.
COG0251. LUCA.
HOGENOMiHOG000267215.
InParanoidiP39332.
OMAiVGVNWLA.
PhylomeDBiP39332.

Enzyme and pathway databases

BioCyciEcoCyc:G7879-MONOMER.
ECOL316407:JW4206-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP39332.
PROiP39332.

Family and domain databases

Gene3Di3.30.1330.40. 1 hit.
InterProiIPR013813. Endoribo_LPSP/chorism_mut-like.
IPR006175. YjgF/YER057c/UK114.
[Graphical view]
PANTHERiPTHR11803. PTHR11803. 1 hit.
PfamiPF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]
SUPFAMiSSF55298. SSF55298. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYJGH_ECOLI
AccessioniPrimary (citable) accession number: P39332
Secondary accession number(s): Q2M660
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 2, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.