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Protein

Uncharacterized protein YjdJ

Gene

yjdJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7829-MONOMER.
ECOL316407:JW4088-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YjdJ
Gene namesi
Name:yjdJ
Ordered Locus Names:b4127, JW4088
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12467. yjdJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001697321 – 90Uncharacterized protein YjdJAdd BLAST90

Proteomic databases

PaxDbiP39274.
PRIDEiP39274.

Interactioni

Protein-protein interaction databases

BioGridi4261769. 13 interactors.
DIPiDIP-12566N.
IntActiP39274. 3 interactors.
STRINGi511145.b4127.

Structurei

Secondary structure

190
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Beta strandi9 – 13Combined sources5
Beta strandi19 – 28Combined sources10
Turni29 – 31Combined sources3
Beta strandi32 – 40Combined sources9
Helixi42 – 44Combined sources3
Helixi49 – 63Combined sources15
Beta strandi67 – 69Combined sources3
Helixi73 – 81Combined sources9
Helixi83 – 88Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5I0CX-ray1.92A1-90[»]
ProteinModelPortaliP39274.
SMRiP39274.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 90N-acetyltransferasePROSITE-ProRule annotationAdd BLAST89

Sequence similaritiesi

Contains 1 N-acetyltransferase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410830R. Bacteria.
COG2388. LUCA.
HOGENOMiHOG000167986.
InParanoidiP39274.
KOiK06975.
OMAiNRKIIPL.
PhylomeDBiP39274.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
IPR031165. GNAT_YJDJ.
[Graphical view]
PfamiPF14542. Acetyltransf_CG. 1 hit.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 1 hit.
PROSITEiPS51729. GNAT_YJDJ. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P39274-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIREGHNKF YINDKQGKQI AEIVFVPTGE NLAIIEHTDV DESLKGQGIG
60 70 80 90
KQLVAKVVEK MRREKRKIIP LCPFAKHEFD KTREYDDIRS
Length:90
Mass (Da):10,468
Last modified:February 1, 1995 - v1
Checksum:i3A8FC370AACC06A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97027.1.
U00096 Genomic DNA. Translation: AAC77088.1.
AP009048 Genomic DNA. Translation: BAE78129.1.
PIRiS56356.
RefSeqiNP_418551.1. NC_000913.3.
WP_000405651.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77088; AAC77088; b4127.
BAE78129; BAE78129; BAE78129.
GeneIDi948647.
KEGGiecj:JW4088.
eco:b4127.
PATRICi32123819. VBIEscCol129921_4258.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97027.1.
U00096 Genomic DNA. Translation: AAC77088.1.
AP009048 Genomic DNA. Translation: BAE78129.1.
PIRiS56356.
RefSeqiNP_418551.1. NC_000913.3.
WP_000405651.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5I0CX-ray1.92A1-90[»]
ProteinModelPortaliP39274.
SMRiP39274.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261769. 13 interactors.
DIPiDIP-12566N.
IntActiP39274. 3 interactors.
STRINGi511145.b4127.

Proteomic databases

PaxDbiP39274.
PRIDEiP39274.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77088; AAC77088; b4127.
BAE78129; BAE78129; BAE78129.
GeneIDi948647.
KEGGiecj:JW4088.
eco:b4127.
PATRICi32123819. VBIEscCol129921_4258.

Organism-specific databases

EchoBASEiEB2360.
EcoGeneiEG12467. yjdJ.

Phylogenomic databases

eggNOGiENOG410830R. Bacteria.
COG2388. LUCA.
HOGENOMiHOG000167986.
InParanoidiP39274.
KOiK06975.
OMAiNRKIIPL.
PhylomeDBiP39274.

Enzyme and pathway databases

BioCyciEcoCyc:G7829-MONOMER.
ECOL316407:JW4088-MONOMER.

Miscellaneous databases

PROiP39274.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
IPR031165. GNAT_YJDJ.
[Graphical view]
PfamiPF14542. Acetyltransf_CG. 1 hit.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 1 hit.
PROSITEiPS51729. GNAT_YJDJ. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJDJ_ECOLI
AccessioniPrimary (citable) accession number: P39274
Secondary accession number(s): Q2M6H7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 2, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.