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Protein

Inner membrane protein YjdF

Gene

yjdF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7825-MONOMER.
ECOL316407:JW4082-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YjdF
Gene namesi
Name:yjdF
Ordered Locus Names:b4121, JW4082
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12463. yjdF.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 77PeriplasmicSequence analysis
Transmembranei8 – 2821HelicalSequence analysisAdd
BLAST
Topological domaini29 – 313CytoplasmicSequence analysis
Transmembranei32 – 5221HelicalSequence analysisAdd
BLAST
Topological domaini53 – 553PeriplasmicSequence analysis
Transmembranei56 – 7621HelicalSequence analysisAdd
BLAST
Topological domaini77 – 13155CytoplasmicSequence analysisAdd
BLAST
Transmembranei132 – 15221HelicalSequence analysisAdd
BLAST
Topological domaini153 – 17725PeriplasmicSequence analysisAdd
BLAST
Transmembranei178 – 19821HelicalSequence analysisAdd
BLAST
Topological domaini199 – 20911CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 209209Inner membrane protein YjdFPRO_0000169729Add
BLAST

Proteomic databases

PaxDbiP39270.

Interactioni

Protein-protein interaction databases

BioGridi4262151. 10 interactions.
STRINGi511145.b4121.

Structurei

3D structure databases

ProteinModelPortaliP39270.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108R5S. Bacteria.
COG3647. LUCA.
HOGENOMiHOG000281612.
InParanoidiP39270.
KOiK08984.
OMAiAYPIAEY.
OrthoDBiEOG68SW2Z.
PhylomeDBiP39270.

Family and domain databases

InterProiIPR014509. UCP020606.
[Graphical view]
PfamiPF09997. DUF2238. 1 hit.
[Graphical view]
PIRSFiPIRSF020606. UCP020606. 1 hit.

Sequencei

Sequence statusi: Complete.

P39270-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRTLKPLIL NTSALTLTLI LIYTGISAHD KLTWLMEVTP VIIVVQLLLA
60 70 80 90 100
TARRYPLTPL LYTLIFLHAI ILMVGGQYTY AKVPVGFEVQ EWLGLSRNPY
110 120 130 140 150
DKLGHFFQGL VPALVAREIL VRGMYVRGRK MVAFLVCCVA LAISAMYELI
160 170 180 190 200
EWWAALAMGQ GADDFLGTQG DQWDTQSDMF CALLGALTTV IFLARFHCRQ

LRRFGLITG
Length:209
Mass (Da):23,442
Last modified:February 1, 1995 - v1
Checksum:iB5EEB5B779146DD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97021.1.
U00096 Genomic DNA. Translation: AAC77082.1.
AP009048 Genomic DNA. Translation: BAE78123.1.
M27058 Genomic DNA. No translation available.
PIRiS56350.
RefSeqiNP_418545.1. NC_000913.3.
WP_000198773.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77082; AAC77082; b4121.
BAE78123; BAE78123; BAE78123.
GeneIDi948634.
KEGGiecj:JW4082.
eco:b4121.
PATRICi32123807. VBIEscCol129921_4252.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97021.1.
U00096 Genomic DNA. Translation: AAC77082.1.
AP009048 Genomic DNA. Translation: BAE78123.1.
M27058 Genomic DNA. No translation available.
PIRiS56350.
RefSeqiNP_418545.1. NC_000913.3.
WP_000198773.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39270.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262151. 10 interactions.
STRINGi511145.b4121.

Proteomic databases

PaxDbiP39270.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77082; AAC77082; b4121.
BAE78123; BAE78123; BAE78123.
GeneIDi948634.
KEGGiecj:JW4082.
eco:b4121.
PATRICi32123807. VBIEscCol129921_4252.

Organism-specific databases

EchoBASEiEB2356.
EcoGeneiEG12463. yjdF.

Phylogenomic databases

eggNOGiENOG4108R5S. Bacteria.
COG3647. LUCA.
HOGENOMiHOG000281612.
InParanoidiP39270.
KOiK08984.
OMAiAYPIAEY.
OrthoDBiEOG68SW2Z.
PhylomeDBiP39270.

Enzyme and pathway databases

BioCyciEcoCyc:G7825-MONOMER.
ECOL316407:JW4082-MONOMER.

Miscellaneous databases

PROiP39270.

Family and domain databases

InterProiIPR014509. UCP020606.
[Graphical view]
PfamiPF09997. DUF2238. 1 hit.
[Graphical view]
PIRSFiPIRSF020606. UCP020606. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12."
    Bell P.J., Andrews S.C., Sivak M.N., Guest J.R.
    J. Bacteriol. 171:3494-3503(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: PRELIMINARY NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-57.
    Strain: K12.
  5. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYJDF_ECOLI
AccessioniPrimary (citable) accession number: P39270
Secondary accession number(s): Q2M6I3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: January 20, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.