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Protein

D-allose-binding periplasmic protein

Gene

alsB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Part of the binding-protein-dependent transport system AlsBAC for D-allose.1 Publication

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:YJCX-MONOMER.
ECOL316407:JW4049-MONOMER.
MetaCyc:YJCX-MONOMER.

Protein family/group databases

TCDBi3.A.1.2.6. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
D-allose-binding periplasmic protein
Short name:
ALBP
Gene namesi
Name:alsB
Synonyms:yjcX
Ordered Locus Names:b4088, JW4049
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12458. alsB.

Subcellular locationi

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • membrane Source: UniProtKB
  • outer membrane-bounded periplasmic space Source: EcoCyc
  • plasma membrane Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Add
BLAST
Chaini24 – 311288D-allose-binding periplasmic proteinPRO_0000031719Add
BLAST

Proteomic databases

PaxDbiP39265.
PRIDEiP39265.

Interactioni

Protein-protein interaction databases

BioGridi4262681. 9 interactions.
IntActiP39265. 6 interactions.
STRINGi511145.b4088.

Structurei

Secondary structure

1
311
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi26 – 327Combined sources
Beta strandi34 – 363Combined sources
Helixi37 – 5317Combined sources
Beta strandi57 – 615Combined sources
Helixi68 – 7912Combined sources
Beta strandi81 – 888Combined sources
Beta strandi91 – 944Combined sources
Helixi97 – 1059Combined sources
Beta strandi109 – 1157Combined sources
Helixi119 – 1246Combined sources
Beta strandi130 – 1345Combined sources
Helixi137 – 15216Combined sources
Helixi153 – 1553Combined sources
Beta strandi157 – 1637Combined sources
Helixi169 – 18315Combined sources
Beta strandi188 – 1958Combined sources
Helixi200 – 21314Combined sources
Beta strandi219 – 2246Combined sources
Helixi225 – 23713Combined sources
Turni241 – 2433Combined sources
Beta strandi244 – 2507Combined sources
Helixi253 – 2608Combined sources
Beta strandi266 – 2694Combined sources
Helixi272 – 28817Combined sources
Beta strandi295 – 2973Combined sources
Beta strandi300 – 3034Combined sources
Beta strandi307 – 3093Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GUBX-ray3.10A24-311[»]
1GUDX-ray1.70A/B24-311[»]
1RPJX-ray1.80A24-311[»]
ProteinModelPortaliP39265.
SMRiP39265. Positions 24-311.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP39265.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105E9V. Bacteria.
COG1879. LUCA.
HOGENOMiHOG000212345.
InParanoidiP39265.
KOiK10549.
OMAiNVEAFIT.
OrthoDBiEOG62ZJ2K.
PhylomeDBiP39265.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P39265-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKYLKYFSG TLVGLMLSTS AFAAAEYAVV LKTLSNPFWV DMKKGIEDEA
60 70 80 90 100
KTLGVSVDIF ASPSEGDFQS QLQLFEDLSN KNYKGIAFAP LSSVNLVMPV
110 120 130 140 150
ARAWKKGIYL VNLDEKIDMD NLKKAGGNVE AFVTTDNVAV GAKGASFIID
160 170 180 190 200
KLGAEGGEVA IIEGKAGNAS GEARRNGATE AFKKASQIKL VASQPADWDR
210 220 230 240 250
IKALDVATNV LQRNPNIKAI YCANDTMAMG VAQAVANAGK TGKVLVVGTD
260 270 280 290 300
GIPEARKMVE AGQMTATVAQ NPADIGATGL KLMVDAEKSG KVIPLDKAPE
310
FKLVDSILVT Q
Length:311
Mass (Da):32,910
Last modified:February 1, 1995 - v1
Checksum:i1A60E05BD1846068
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti16 – 161M → I in CAA57686 (PubMed:8576032).Curated
Sequence conflicti125 – 1306AGGNVE → LAQCGS in CAA57686 (PubMed:8576032).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA96987.1.
U00096 Genomic DNA. Translation: AAC77049.1.
AP009048 Genomic DNA. Translation: BAE78091.1.
X82203 Genomic DNA. Translation: CAA57686.1.
PIRiS56316.
RefSeqiNP_418512.1. NC_000913.3.
WP_001046187.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77049; AAC77049; b4088.
BAE78091; BAE78091; BAE78091.
GeneIDi948604.
KEGGiecj:JW4049.
eco:b4088.
PATRICi32123733. VBIEscCol129921_4215.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA96987.1.
U00096 Genomic DNA. Translation: AAC77049.1.
AP009048 Genomic DNA. Translation: BAE78091.1.
X82203 Genomic DNA. Translation: CAA57686.1.
PIRiS56316.
RefSeqiNP_418512.1. NC_000913.3.
WP_001046187.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GUBX-ray3.10A24-311[»]
1GUDX-ray1.70A/B24-311[»]
1RPJX-ray1.80A24-311[»]
ProteinModelPortaliP39265.
SMRiP39265. Positions 24-311.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262681. 9 interactions.
IntActiP39265. 6 interactions.
STRINGi511145.b4088.

Protein family/group databases

TCDBi3.A.1.2.6. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP39265.
PRIDEiP39265.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77049; AAC77049; b4088.
BAE78091; BAE78091; BAE78091.
GeneIDi948604.
KEGGiecj:JW4049.
eco:b4088.
PATRICi32123733. VBIEscCol129921_4215.

Organism-specific databases

EchoBASEiEB2352.
EcoGeneiEG12458. alsB.

Phylogenomic databases

eggNOGiENOG4105E9V. Bacteria.
COG1879. LUCA.
HOGENOMiHOG000212345.
InParanoidiP39265.
KOiK10549.
OMAiNVEAFIT.
OrthoDBiEOG62ZJ2K.
PhylomeDBiP39265.

Enzyme and pathway databases

BioCyciEcoCyc:YJCX-MONOMER.
ECOL316407:JW4049-MONOMER.
MetaCyc:YJCX-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP39265.
PROiP39265.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression."
    Soerensen K.I., Hove-Jensen B.
    J. Bacteriol. 178:1003-1011(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-130.
    Strain: K12.
  5. "The D-allose operon of Escherichia coli K-12."
    Kim C., Song S., Park C.
    J. Bacteriol. 179:7631-7637(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  6. "Structure of D-allose binding protein from Escherichia coli bound to D-allose at 1.8-A resolution."
    Chaudhuri B.N., Ko J., Park C., Jones T.A., Mowbray S.L.
    J. Mol. Biol. 286:1519-1531(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS).

Entry informationi

Entry nameiALSB_ECOLI
AccessioniPrimary (citable) accession number: P39265
Secondary accession number(s): Q2M6L5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: July 6, 2016
This is version 129 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.