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Protein

D-allose-binding periplasmic protein

Gene

alsB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Part of the binding-protein-dependent transport system AlsBAC for D-allose.1 Publication

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:YJCX-MONOMER.
ECOL316407:JW4049-MONOMER.
MetaCyc:YJCX-MONOMER.

Protein family/group databases

TCDBi3.A.1.2.6. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
D-allose-binding periplasmic protein
Short name:
ALBP
Gene namesi
Name:alsB
Synonyms:yjcX
Ordered Locus Names:b4088, JW4049
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12458. alsB.

Subcellular locationi

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • membrane Source: UniProtKB
  • outer membrane-bounded periplasmic space Source: EcoCyc
  • plasma membrane Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Add BLAST23
ChainiPRO_000003171924 – 311D-allose-binding periplasmic proteinAdd BLAST288

Proteomic databases

PaxDbiP39265.
PRIDEiP39265.

Interactioni

Protein-protein interaction databases

BioGridi4262681. 9 interactors.
IntActiP39265. 6 interactors.
STRINGi511145.b4088.

Structurei

Secondary structure

1311
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi26 – 32Combined sources7
Beta strandi34 – 36Combined sources3
Helixi37 – 53Combined sources17
Beta strandi57 – 61Combined sources5
Helixi68 – 79Combined sources12
Beta strandi81 – 88Combined sources8
Beta strandi91 – 94Combined sources4
Helixi97 – 105Combined sources9
Beta strandi109 – 115Combined sources7
Helixi119 – 124Combined sources6
Beta strandi130 – 134Combined sources5
Helixi137 – 152Combined sources16
Helixi153 – 155Combined sources3
Beta strandi157 – 163Combined sources7
Helixi169 – 183Combined sources15
Beta strandi188 – 195Combined sources8
Helixi200 – 213Combined sources14
Beta strandi219 – 224Combined sources6
Helixi225 – 237Combined sources13
Turni241 – 243Combined sources3
Beta strandi244 – 250Combined sources7
Helixi253 – 260Combined sources8
Beta strandi266 – 269Combined sources4
Helixi272 – 288Combined sources17
Beta strandi295 – 297Combined sources3
Beta strandi300 – 303Combined sources4
Beta strandi307 – 309Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GUBX-ray3.10A24-311[»]
1GUDX-ray1.70A/B24-311[»]
1RPJX-ray1.80A24-311[»]
ProteinModelPortaliP39265.
SMRiP39265.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP39265.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105E9V. Bacteria.
COG1879. LUCA.
HOGENOMiHOG000212345.
InParanoidiP39265.
KOiK10549.
OMAiNVEAFIT.
PhylomeDBiP39265.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P39265-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKYLKYFSG TLVGLMLSTS AFAAAEYAVV LKTLSNPFWV DMKKGIEDEA
60 70 80 90 100
KTLGVSVDIF ASPSEGDFQS QLQLFEDLSN KNYKGIAFAP LSSVNLVMPV
110 120 130 140 150
ARAWKKGIYL VNLDEKIDMD NLKKAGGNVE AFVTTDNVAV GAKGASFIID
160 170 180 190 200
KLGAEGGEVA IIEGKAGNAS GEARRNGATE AFKKASQIKL VASQPADWDR
210 220 230 240 250
IKALDVATNV LQRNPNIKAI YCANDTMAMG VAQAVANAGK TGKVLVVGTD
260 270 280 290 300
GIPEARKMVE AGQMTATVAQ NPADIGATGL KLMVDAEKSG KVIPLDKAPE
310
FKLVDSILVT Q
Length:311
Mass (Da):32,910
Last modified:February 1, 1995 - v1
Checksum:i1A60E05BD1846068
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti16M → I in CAA57686 (PubMed:8576032).Curated1
Sequence conflicti125 – 130AGGNVE → LAQCGS in CAA57686 (PubMed:8576032).Curated6

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA96987.1.
U00096 Genomic DNA. Translation: AAC77049.1.
AP009048 Genomic DNA. Translation: BAE78091.1.
X82203 Genomic DNA. Translation: CAA57686.1.
PIRiS56316.
RefSeqiNP_418512.1. NC_000913.3.
WP_001046187.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77049; AAC77049; b4088.
BAE78091; BAE78091; BAE78091.
GeneIDi948604.
KEGGiecj:JW4049.
eco:b4088.
PATRICi32123733. VBIEscCol129921_4215.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA96987.1.
U00096 Genomic DNA. Translation: AAC77049.1.
AP009048 Genomic DNA. Translation: BAE78091.1.
X82203 Genomic DNA. Translation: CAA57686.1.
PIRiS56316.
RefSeqiNP_418512.1. NC_000913.3.
WP_001046187.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GUBX-ray3.10A24-311[»]
1GUDX-ray1.70A/B24-311[»]
1RPJX-ray1.80A24-311[»]
ProteinModelPortaliP39265.
SMRiP39265.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262681. 9 interactors.
IntActiP39265. 6 interactors.
STRINGi511145.b4088.

Protein family/group databases

TCDBi3.A.1.2.6. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP39265.
PRIDEiP39265.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77049; AAC77049; b4088.
BAE78091; BAE78091; BAE78091.
GeneIDi948604.
KEGGiecj:JW4049.
eco:b4088.
PATRICi32123733. VBIEscCol129921_4215.

Organism-specific databases

EchoBASEiEB2352.
EcoGeneiEG12458. alsB.

Phylogenomic databases

eggNOGiENOG4105E9V. Bacteria.
COG1879. LUCA.
HOGENOMiHOG000212345.
InParanoidiP39265.
KOiK10549.
OMAiNVEAFIT.
PhylomeDBiP39265.

Enzyme and pathway databases

BioCyciEcoCyc:YJCX-MONOMER.
ECOL316407:JW4049-MONOMER.
MetaCyc:YJCX-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP39265.
PROiP39265.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiALSB_ECOLI
AccessioniPrimary (citable) accession number: P39265
Secondary accession number(s): Q2M6L5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 2, 2016
This is version 132 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.