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Protein

Uncharacterized protein YtfJ

Gene

ytfJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7871-MONOMER.
ECOL316407:JW4175-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YtfJ
Gene namesi
Name:ytfJ
Ordered Locus Names:b4216, JW4175
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12510. ytfJ.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 20201 PublicationAdd
BLAST
Chaini21 – 184164Uncharacterized protein YtfJPRO_0000013944Add
BLAST

Proteomic databases

EPDiP39187.
PaxDbiP39187.
PRIDEiP39187.

Interactioni

Protein-protein interaction databases

BioGridi4261015. 8 interactions.
STRINGi511145.b4216.

Structurei

3D structure databases

ProteinModelPortaliP39187.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_0045.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108UUE. Bacteria.
COG3054. LUCA.
HOGENOMiHOG000282789.
KOiK07109.
OMAiQFSYKNW.
OrthoDBiEOG6B628X.

Family and domain databases

InterProiIPR006513. CHP01626_YtfJ.
[Graphical view]
PfamiPF09695. YtfJ_HI0045. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01626. ytfJ_HI0045. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P39187-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLRKILALT CLLLPMMASA HQFETGQRVP PIGITDRGEL VLDKDQFSYK
60 70 80 90 100
TWNSAQLVGK VRVLQHIAGR TSAKEKNATL IEAIKSAKLP HDRYQTTTIV
110 120 130 140 150
NTDDAIPGSG MFVRSSLESN KKLYPWSQFI VDSNGVALGA WQLDEESSAV
160 170 180
VVLDKDGRVQ WAKDGALTPE EVQQVMDLLQ KLLK
Length:184
Mass (Da):20,421
Last modified:February 1, 1995 - v1
Checksum:i5B699B743ABAF412
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97112.1.
U00096 Genomic DNA. Translation: AAC77173.1.
AP009048 Genomic DNA. Translation: BAE78217.1.
D21142 Genomic DNA. Translation: BAA04678.1.
PIRiS56441.
RefSeqiNP_418637.1. NC_000913.3.
WP_000175279.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77173; AAC77173; b4216.
BAE78217; BAE78217; BAE78217.
GeneIDi948737.
KEGGiecj:JW4175.
eco:b4216.
PATRICi32124007. VBIEscCol129921_4348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97112.1.
U00096 Genomic DNA. Translation: AAC77173.1.
AP009048 Genomic DNA. Translation: BAE78217.1.
D21142 Genomic DNA. Translation: BAA04678.1.
PIRiS56441.
RefSeqiNP_418637.1. NC_000913.3.
WP_000175279.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39187.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261015. 8 interactions.
STRINGi511145.b4216.

Proteomic databases

EPDiP39187.
PaxDbiP39187.
PRIDEiP39187.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77173; AAC77173; b4216.
BAE78217; BAE78217; BAE78217.
GeneIDi948737.
KEGGiecj:JW4175.
eco:b4216.
PATRICi32124007. VBIEscCol129921_4348.

Organism-specific databases

EchoBASEiEB2403.
EcoGeneiEG12510. ytfJ.

Phylogenomic databases

eggNOGiENOG4108UUE. Bacteria.
COG3054. LUCA.
HOGENOMiHOG000282789.
KOiK07109.
OMAiQFSYKNW.
OrthoDBiEOG6B628X.

Enzyme and pathway databases

BioCyciEcoCyc:G7871-MONOMER.
ECOL316407:JW4175-MONOMER.

Miscellaneous databases

PROiP39187.

Family and domain databases

InterProiIPR006513. CHP01626_YtfJ.
[Graphical view]
PfamiPF09695. YtfJ_HI0045. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01626. ytfJ_HI0045. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Analysis of products of the Escherichia coli genomic genes and regulation of their expressions: an applicable procedure for genomic analysis of other microorganisms."
    Talukder A.A., Yanai S., Yamada M.
    Biosci. Biotechnol. Biochem. 58:117-120(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-36.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
    Link A.J., Robison K., Church G.M.
    Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 21-32.
    Strain: K12 / EMG2.
  6. "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography."
    Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.
    Electrophoresis 20:2181-2195(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: B / BL21.

Entry informationi

Entry nameiYTFJ_ECOLI
AccessioniPrimary (citable) accession number: P39187
Secondary accession number(s): Q2M689
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: March 16, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.