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Protein

Uncharacterized protein YchO

Gene

ychO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12405-MONOMER.
ECOL316407:JW1211-MONOMER.

Protein family/group databases

TCDBi1.B.54.1.9. the intimin/invasin (int/inv) or autotransporter-3 (at-3) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YchO
Gene namesi
Name:ychO
Synonyms:ychP
Ordered Locus Names:b1220, JW1211
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12405. ychO.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 464440Uncharacterized protein YchOPRO_0000211832Add
BLAST

Proteomic databases

PaxDbiP39165.

Interactioni

Protein-protein interaction databases

BioGridi4263269. 117 interactions.
IntActiP39165. 7 interactions.
STRINGi511145.b1220.

Structurei

3D structure databases

ProteinModelPortaliP39165.
SMRiP39165. Positions 106-348.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the intimin/invasin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105ID0. Bacteria.
ENOG410XSN7. LUCA.
HOGENOMiHOG000119789.
InParanoidiP39165.
OMAiRFSANYY.
OrthoDBiEOG6M9DRK.

Family and domain databases

InterProiIPR024519. Invasin_beta.
[Graphical view]
PfamiPF11924. Invasin_beta. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P39165-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRFVPRIIP FYLLLLVAGG TANAQSTFEQ KAANPFDNNN DGLPDLGMAP
60 70 80 90 100
ENHDGEKHFA EIVKDFGETS MNDNGLDTGE QAKAFALGKV RDALSQQVNQ
110 120 130 140 150
HVESWLSPWG NASVDVKVDN EGHFTGSRGS WFVPLQDNDR YLTWSQLGLT
160 170 180 190 200
QQDNGLVSNV GVGQRWARGN WLVGYNTFYD NLLDENLQRA GFGAEAWGEY
210 220 230 240 250
LRLSANFYQP FAAWHEQTAT QEQRMARGYD LTARMRMPFY QHLNTSVSLE
260 270 280 290 300
QYFGDRVDLF NSGTGYHNPV ALSLGLNYTP VPLVTVTAQH KQGESGENQN
310 320 330 340 350
NLGLNLNYRF GVPLKKQLSA GEVAESQSLR GSRYDNPQRN NLPTLEYRQR
360 370 380 390 400
KTLTVFLATP PWDLKPGETV PLKLQIRSRY GIRQLIWQGD TQILSLTPGA
410 420 430 440 450
QANSAEGWTL IMPDWQNGEG ASNHWRLSVV VEDNQGQRVS SNEITLTLVE
460
PFDALSNDEL RWEP
Length:464
Mass (Da):52,100
Last modified:June 26, 2007 - v3
Checksum:iFF826965DE18B630
GO

Sequence cautioni

The sequence X69189 differs from that shown. Reason: Frameshift at position 445. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74304.2.
AP009048 Genomic DNA. Translation: BAA36088.1.
L28709 Genomic DNA. No translation available.
X13360 Genomic DNA. No translation available.
M24910 Genomic DNA. No translation available.
X69189 Genomic DNA. No translation available.
PIRiA64869.
RefSeqiNP_415738.2. NC_000913.3.
WP_000086217.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74304; AAC74304; b1220.
BAA36088; BAA36088; BAA36088.
GeneIDi945801.
KEGGiecj:JW1211.
eco:b1220.
PATRICi32117698. VBIEscCol129921_1271.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74304.2.
AP009048 Genomic DNA. Translation: BAA36088.1.
L28709 Genomic DNA. No translation available.
X13360 Genomic DNA. No translation available.
M24910 Genomic DNA. No translation available.
X69189 Genomic DNA. No translation available.
PIRiA64869.
RefSeqiNP_415738.2. NC_000913.3.
WP_000086217.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP39165.
SMRiP39165. Positions 106-348.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263269. 117 interactions.
IntActiP39165. 7 interactions.
STRINGi511145.b1220.

Protein family/group databases

TCDBi1.B.54.1.9. the intimin/invasin (int/inv) or autotransporter-3 (at-3) family.

Proteomic databases

PaxDbiP39165.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74304; AAC74304; b1220.
BAA36088; BAA36088; BAA36088.
GeneIDi945801.
KEGGiecj:JW1211.
eco:b1220.
PATRICi32117698. VBIEscCol129921_1271.

Organism-specific databases

EchoBASEiEB2305.
EcoGeneiEG12405. ychO.

Phylogenomic databases

eggNOGiENOG4105ID0. Bacteria.
ENOG410XSN7. LUCA.
HOGENOMiHOG000119789.
InParanoidiP39165.
OMAiRFSANYY.
OrthoDBiEOG6M9DRK.

Enzyme and pathway databases

BioCyciEcoCyc:EG12405-MONOMER.
ECOL316407:JW1211-MONOMER.

Miscellaneous databases

PROiP39165.

Family and domain databases

InterProiIPR024519. Invasin_beta.
[Graphical view]
PfamiPF11924. Invasin_beta. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Ivey D.M., Guffanti A.A., Zemsky J., Pinner E., Karpel R., Padan E., Schuldiner S., Krulwich T.A.
    Submitted (JUL-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-37.
    Strain: NM8191.
  5. "The narX and narL genes encoding the nitrate-sensing regulators of Escherichia coli are homologous to a family of prokaryotic two-component regulatory genes."
    Nohno T., Noji S., Taniguchi S., Saito T.
    Nucleic Acids Res. 17:2947-2957(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 306-417.
    Strain: K12.
  6. "Structure of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12."
    Stewart V., Parales J. Jr., Merkel S.M.
    J. Bacteriol. 171:2229-2234(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 364-417.
    Strain: K12.
  7. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYCHO_ECOLI
AccessioniPrimary (citable) accession number: P39165
Secondary accession number(s): P46124, P76022
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: June 26, 2007
Last modified: January 20, 2016
This is version 94 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.