P39053 (DYN1_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 117.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Dynamin-1 EC=3.6.5.5 | ||||
| Gene names |
| ||||
| Organism | Mus musculus (Mouse) | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus |
Protein attributes
| Sequence length | 867 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Microtubule-associated force-producing protein involved in producing microtubule bundles and able to bind and hydrolyze GTP. Most probably involved in vesicular trafficking processes. Involved in receptor-mediated endocytosis By similarity. |
| Catalytic activity | GTP + H2O = GDP + phosphate. |
| Subunit structure | Binds SH3GL1, SH3GL2 and SH3GL3 By similarity. Interacts with SNX9 By similarity. Interacts with PHOCN By similarity. Interacts with CAV1 and SH3GLB1. Ref.8 Ref.9 |
| Subcellular location | Cytoplasm. Cytoplasm › cytoskeleton. Note: Microtubule-associated. |
| Post-translational modification | Phosphorylated in response to EGF stimulation in cells expressing truncated EGFR. Ref.8 Ref.11 Ref.12 Ref.13 |
| Sequence similarities | Belongs to the dynamin family. Contains 1 GED domain. Contains 1 PH domain. |
| Sequence caution | The sequence BAD90284.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Endocytosis |
| Cellular component | Cytoplasm Cytoskeleton Microtubule |
| Coding sequence diversity | Alternative splicing |
| Ligand | GTP-binding Nucleotide-binding |
| Molecular function | Hydrolase Motor protein |
| PTM | Nitration Phosphoprotein |
| Technical term | Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Cellular component | membrane coat Inferred from direct assay. Source: MGI microtubuleInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | GTP binding Inferred from electronic annotation. Source: UniProtKB-KW GTPase activityInferred from electronic annotation. Source: InterPro protein bindingInferred from physical interaction Ref.8. Source: UniProtKB |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Pfn2 | Q9JJV2-1 | 2 | EBI-397785,EBI-990256 |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P39053-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: Phosphorylated on Ser-847. | ||||||
| Isoform 2 (identifier: P39053-2) Also known as: BreDnm19; The sequence of this isoform differs from the canonical sequence as follows: 516-519: Missing. 846-867: LGAWRLNSPQGKHENRAGKARL → RKAQPHLRDLQPPDQRRLPS | ||||||
| Isoform 3 (identifier: P39053-3) Also known as: BraDnm8; The sequence of this isoform differs from the canonical sequence as follows: 407-444: MAFETIVKKQ...LISTVRQCTK → LAFEATVKKQ...LTSTIRKCSE 845-867: SLGAWRLNSPQGKHENRAGKARL → RITISDP | ||||||
| Isoform 4 (identifier: P39053-4) Also known as: BraDnm2; The sequence of this isoform differs from the canonical sequence as follows: 846-867: LGAWRLNSPQGKHENRAGKARL → RSGQASPSRPESPRPPFDL | ||||||
| Isoform 5 (identifier: P39053-5) Also known as: BreDnm15; The sequence of this isoform differs from the canonical sequence as follows: 845-867: SLGAWRLNSPQGKHENRAGKARL → RITISDP | ||||||
| Isoform 6 (identifier: P39053-6) The sequence of this isoform differs from the canonical sequence as follows: 516-519: Missing. 846-867: LGAWRLNSPQGKHENRAGKARL → RKGPASPTRPAAPRPTEAPLLDL | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 867 | 867 | Dynamin-1 | PRO_0000206564 | |||||
Regions | |||||||||
| Domain | 515 – 625 | 111 | PH | ||||||
| Domain | 659 – 750 | 92 | GED | ||||||
| Nucleotide binding | 38 – 45 | 8 | GTP By similarity | ||||||
| Nucleotide binding | 136 – 140 | 5 | GTP By similarity | ||||||
| Nucleotide binding | 205 – 208 | 4 | GTP By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 80 | 1 | Phosphotyrosine Ref.11 | ||||||
| Modified residue | 125 | 1 | Nitrated tyrosine Ref.10 | ||||||
| Modified residue | 125 | 1 | Phosphotyrosine Ref.11 | ||||||
| Modified residue | 354 | 1 | Phosphotyrosine Ref.11 | ||||||
| Modified residue | 774 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 776 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 778 | 1 | Phosphoserine Ref.12 | ||||||
Natural variations | |||||||||
| Alternative sequence | 407 – 444 | 38 | MAFET…RQCTK → LAFEATVKKQVQKLKEPSIK CVDMVVSELTSTIRKCSE in isoform 3. | VSP_007643 | |||||
| Alternative sequence | 516 – 519 | 4 | Missing in isoform 2 and isoform 6. | VSP_007644 | |||||
| Alternative sequence | 845 – 867 | 23 | SLGAW…GKARL → RITISDP in isoform 3 and isoform 5. | VSP_007645 | |||||
| Alternative sequence | 846 – 867 | 22 | LGAWR…GKARL → RKAQPHLRDLQPPDQRRLPS in isoform 2. | VSP_007646 | |||||
| Alternative sequence | 846 – 867 | 22 | LGAWR…GKARL → RSGQASPSRPESPRPPFDL in isoform 4. | VSP_007647 | |||||
| Alternative sequence | 846 – 867 | 22 | LGAWR…GKARL → RKGPASPTRPAAPRPTEAPL LDL in isoform 6. | VSP_024845 | |||||
Experimental info | |||||||||
| Sequence conflict | 135 | 1 | V → A in AAA37318. Ref.1 | ||||||
| Sequence conflict | 450 | 1 | P → R in AAA37318. Ref.1 | ||||||
| Sequence conflict | 531 | 1 | I → S in AAA37318. Ref.1 | ||||||
| Sequence conflict | 573 | 1 | R → H in BAE25726. Ref.2 | ||||||
| Sequence conflict | 600 | 1 | Y → N in AAA37318. Ref.1 | ||||||
| Sequence conflict | 703 | 1 | A → V in AAH58623. Ref.5 | ||||||
| Sequence conflict | 722 | 1 | A → R in AAA37319. Ref.1 | ||||||
| Sequence conflict | 722 | 1 | A → R in AAA37323. Ref.1 | ||||||
| Sequence conflict | 722 | 1 | A → R in AAA37324. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Dynamin genes Dnm1 and Dnm2 are located on proximal mouse chromosomes 2 and 9, respectively." Klocke R., Augustin A., Ronsiek M., Stief A., van der Putten H., Jockusch H. Genomics 41:290-292(1997) [PubMed: 9143510] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2; 3; 4 AND 5). Strain: NIH Swiss. Tissue: Brain. |
| [2] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6). Strain: C57BL/6J. Tissue: Colon and Embryo. |
| [3] | "Prediction of the coding sequences of mouse homologues of KIAA gene. The complete nucleotide sequences of mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries." Okazaki N., Kikuno R.F., Ohara R., Inamoto S., Nagase T., Ohara O., Koga H. Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). |
| [4] | "Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P.PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 5). Strain: C57BL/6. Tissue: Brain and Retina. |
| [6] | "Characterization of the mouse dynamin I gene promoter and identification of sequences that direct expression in neuronal cells." Yoo J., Lee S.S., Jeong M.J., Lee K.I., Kwon B.M., Kim S.H., Park Y.M., Han M.Y. Biochem. J. 351:661-668(2000) [PubMed: 11042120] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-32. |
| [7] | Lubec G., Klug S., Kang S.U., Sunyer B., Chen W.-Q. Submitted (JAN-2009) to UniProtKB Cited for: PROTEIN SEQUENCE OF 5-54; 67-87; 91-107; 114-188; 207-217; 230-237; 247-266; 280-290; 300-309; 328-361; 370-376; 400-414; 511-535; 563-571; 584-594; 664-675 AND 684-694. Strain: C57BL/6 and OF1. Tissue: Brain and Hippocampus. |
| [8] | "The endocytosis-linked protein dynamin associates with caveolin-1 and is tyrosine phosphorylated in response to the activation of a noninternalizing epidermal growth factor receptor mutant." Kim Y.N., Bertics P.J. Endocrinology 143:1726-1731(2002) [PubMed: 11956154] [Abstract] Cited for: INTERACTION WITH CAV1, PHOSPHORYLATION. |
| [9] | "Characterization of endophilin B1b, a brain-specific membrane-associated lysophosphatidic acid acyl transferase with properties distinct from endophilin A1." Modregger J., Schmidt A.A., Ritter B., Huttner W.B., Plomann M. J. Biol. Chem. 278:4160-4167(2003) [PubMed: 12456676] [Abstract] Cited for: INTERACTION WITH SH3GLB1. |
| [10] | "Endogenously nitrated proteins in mouse brain: links to neurodegenerative disease." Sacksteder C.A., Qian W.-J., Knyushko T.V., Wang H., Chin M.H., Lacan G., Melega W.P., Camp D.G. II, Smith R.D., Smith D.J., Squier T.C., Bigelow D.J. Biochemistry 45:8009-8022(2006) [PubMed: 16800626] [Abstract] Cited for: NITRATION [LARGE SCALE ANALYSIS] AT TYR-125, MASS SPECTROMETRY. Tissue: Brain. |
| [11] | "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain." Ballif B.A., Carey G.R., Sunyaev S.R., Gygi S.P. J. Proteome Res. 7:311-318(2008) [PubMed: 18034455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-80; TYR-125 AND TYR-354, MASS SPECTROMETRY. Tissue: Brain. |
| [12] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed: 19367708] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-778, MASS SPECTROMETRY. Tissue: Melanoma. |
| [13] | "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry." Sweet S.M., Bailey C.M., Cunningham D.L., Heath J.K., Cooper H.J. Mol. Cell. Proteomics 8:904-912(2009) [PubMed: 19131326] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-847 (ISOFORM 6), MASS SPECTROMETRY. Tissue: Embryonic fibroblast. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | L29457 mRNA. Translation: AAA37319.1. L31395 mRNA. Translation: AAA37318.1. L31396 mRNA. Translation: AAA37323.1. L31397 mRNA. Translation: AAA37324.1. AK011651 mRNA. Translation: BAB27759.1. AK144142 mRNA. Translation: BAE25726.1. AK220483 mRNA. Translation: BAD90284.1. Different initiation. AL808027 Genomic DNA. Translation: CAM15852.1. AL808027 Genomic DNA. Translation: CAM15853.1. AL808027 Genomic DNA. Translation: CAM15855.1. AL808027 Genomic DNA. Translation: CAM15857.1. BC034679 mRNA. Translation: AAH34679.1. BC058623 mRNA. Translation: AAH58623.1. AF170568 Genomic DNA. Translation: AAF24220.1. |
| IPI | IPI00272878. IPI00331291. IPI00331293. IPI00465648. IPI00753037. IPI00845595. |
| RefSeq | NP_034195.2. NM_010065.2. |
| UniGene | Mm.44736. |
3D structure databases | |
| ProteinModelPortal | P39053. |
| SMR | P39053. Positions 6-746. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P39053. 12 interactions. |
| MINT | MINT-86537. |
| STRING | P39053. |
PTM databases | |
| PhosphoSite | P39053. |
Proteomic databases | |
| PRIDE | P39053. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000078352; ENSMUSP00000077461; ENSMUSG00000026825. ENSMUST00000091089; ENSMUSP00000088618; ENSMUSG00000026825. ENSMUST00000113350; ENSMUSP00000108977; ENSMUSG00000026825. ENSMUST00000113352; ENSMUSP00000108979; ENSMUSG00000026825. ENSMUST00000113354; ENSMUSP00000108981; ENSMUSG00000026825. ENSMUST00000113365; ENSMUSP00000108992; ENSMUSG00000026825. ENSMUST00000139624; ENSMUSP00000122679; ENSMUSG00000026825. |
| GeneID | 13429. |
| KEGG | mmu:13429. |
| UCSC | uc008jfc.1. mouse. uc008jfd.1. mouse. |
Organism-specific databases | |
| CTD | 1759. |
| MGI | MGI:107384. Dnm1. |
| Rouge | Search... |
Phylogenomic databases | |
| eggNOG | roNOG10695. |
| GeneTree | ENSGT00600000084144. |
| HOVERGEN | HBG107833. |
| OMA | DMILTFI. |
| OrthoDB | EOG49GKG1. |
| PhylomeDB | P39053. |
Gene expression databases | |
| ArrayExpress | P39053. |
| Bgee | P39053. |
| CleanEx | MM_DNM1. |
| Genevestigator | P39053. |
| GermOnline | ENSMUSG00000026825. Mus musculus. |
Family and domain databases | |
| InterPro | IPR022812. Dynamin. IPR000375. Dynamin_central. IPR001401. Dynamin_GTPase. IPR019762. Dynamin_GTPase_CS. IPR003130. GED. IPR020850. GTPase_effector_domain_GED. IPR011993. PH_type. IPR001849. Pleckstrin_homology. [Graphical view] |
| Gene3D | G3DSA:2.30.29.30. PH_type. 2 hits. |
| KO | K01528. |
| Pfam | PF01031. Dynamin_M. 1 hit. PF00350. Dynamin_N. 1 hit. PF02212. GED. 1 hit. PF00169. PH. 1 hit. [Graphical view] |
| PRINTS | PR00195. DYNAMIN. |
| SMART | SM00053. DYNc. 1 hit. SM00302. GED. 1 hit. SM00233. PH. 1 hit. [Graphical view] |
| PROSITE | PS00410. DYNAMIN. 1 hit. PS51388. GED. 1 hit. PS50003. PH_DOMAIN. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 283851. |
| SOURCE | Search... |
Entry information
| Entry name | DYN1_MOUSE | ||||||||
| Accession | Primary (citable) accession number: P39053 Secondary accession number(s): A2AN50 Q9QXX1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with