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P38902

- RPB11_YEAST

UniProt

P38902 - RPB11_YEAST

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Protein

DNA-directed RNA polymerase II subunit RPB11

Gene
RPB11, YOL005C
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft. Seems to be involved transcript termination.1 Publication

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. protein binding Source: IntAct

GO - Biological processi

  1. termination of RNA polymerase II transcription Source: SGD
  2. transcription, RNA-templated Source: GOC
  3. transcription from RNA polymerase II promoter Source: SGD
Complete GO annotation...

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciYEAST:G3O-33422-MONOMER.
ReactomeiREACT_191540. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase II subunit RPB11
Short name:
RNA polymerase II subunit B11
Alternative name(s):
B13.6
DNA-directed RNA polymerase II 13.6 kDa polypeptide
Gene namesi
Name:RPB11
Ordered Locus Names:YOL005C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XV

Organism-specific databases

CYGDiYOL005c.
SGDiS000005365. RPB11.

Subcellular locationi

GO - Cellular componenti

  1. DNA-directed RNA polymerase II, core complex Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

DNA-directed RNA polymerase, Nucleus

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi108 – 1081E → G or V: Transcript termination readthrough. 1 Publication
Mutagenesisi108 – 1081E → K: Transcript termination readthrough. Lethal. 1 Publication
Mutagenesisi111 – 1111L → P: Transcript termination readthrough. 1 Publication
Mutagenesisi114 – 1141L → P: Transcript termination readthrough. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 120120DNA-directed RNA polymerase II subunit RPB11PRO_0000149315Add
BLAST

Proteomic databases

MaxQBiP38902.
PaxDbiP38902.
PeptideAtlasiP38902.

Expressioni

Gene expression databases

GenevestigatoriP38902.

Interactioni

Subunit structurei

Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.

Binary interactionsi

WithEntry#Exp.IntActNotes
RPB3P163704EBI-15806,EBI-15773

Protein-protein interaction databases

BioGridi34399. 50 interactions.
DIPiDIP-937N.
IntActiP38902. 15 interactions.
MINTiMINT-618340.
STRINGi4932.YOL005C.

Structurei

Secondary structure

1
120
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi7 – 93
Beta strandi18 – 203
Beta strandi21 – 233
Beta strandi25 – 273
Beta strandi30 – 378
Helixi40 – 5011
Beta strandi51 – 533
Beta strandi56 – 627
Beta strandi66 – 683
Beta strandi70 – 778
Helixi83 – 10826
Turni109 – 1113

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1I3QX-ray3.10K1-120[»]
1I50X-ray2.80K1-120[»]
1I6HX-ray3.30K1-120[»]
1K83X-ray2.80K1-120[»]
1NIKX-ray4.10K1-120[»]
1NT9X-ray4.20K1-120[»]
1PQVX-ray3.80K1-120[»]
1R5UX-ray4.50K1-120[»]
1R9SX-ray4.25K1-120[»]
1R9TX-ray3.50K1-120[»]
1SFOX-ray3.61K1-120[»]
1TWAX-ray3.20K1-120[»]
1TWCX-ray3.00K1-120[»]
1TWFX-ray2.30K1-120[»]
1TWGX-ray3.30K1-120[»]
1TWHX-ray3.40K1-120[»]
1WCMX-ray3.80K1-120[»]
1Y1VX-ray3.80K1-120[»]
1Y1WX-ray4.00K1-120[»]
1Y1YX-ray4.00K1-120[»]
1Y77X-ray4.50K1-120[»]
2B63X-ray3.80K1-120[»]
2B8KX-ray4.15K1-120[»]
2E2HX-ray3.95K1-120[»]
2E2IX-ray3.41K1-120[»]
2E2JX-ray3.50K1-120[»]
2JA5X-ray3.80K1-120[»]
2JA6X-ray4.00K1-120[»]
2JA7X-ray3.80K/W1-120[»]
2JA8X-ray3.80K1-120[»]
2NVQX-ray2.90K1-120[»]
2NVTX-ray3.36K1-120[»]
2NVXX-ray3.60K1-120[»]
2NVYX-ray3.40K1-120[»]
2NVZX-ray4.30K1-120[»]
2R7ZX-ray3.80K1-120[»]
2R92X-ray3.80K1-120[»]
2R93X-ray4.00K1-120[»]
2VUMX-ray3.40K1-120[»]
2YU9X-ray3.40K1-120[»]
3CQZX-ray2.80K1-120[»]
3FKIX-ray3.88K1-120[»]
3GTGX-ray3.78K1-120[»]
3GTJX-ray3.42K1-120[»]
3GTKX-ray3.80K1-120[»]
3GTLX-ray3.38K1-120[»]
3GTMX-ray3.80K1-120[»]
3GTOX-ray4.00K1-120[»]
3GTPX-ray3.90K1-120[»]
3GTQX-ray3.80K1-120[»]
3H3VX-ray4.00L1-120[»]
3HOUX-ray3.20K/W1-120[»]
3HOVX-ray3.50K1-120[»]
3HOWX-ray3.60K1-120[»]
3HOXX-ray3.65K1-120[»]
3HOYX-ray3.40K1-120[»]
3HOZX-ray3.65K1-120[»]
3I4MX-ray3.70K1-120[»]
3I4NX-ray3.90K1-120[»]
3J0Kelectron microscopy36.00K1-120[»]
3J1Nelectron microscopy16.00K1-120[»]
3K1FX-ray4.30K1-120[»]
3K7AX-ray3.80K1-120[»]
3M3YX-ray3.18K1-120[»]
3M4OX-ray3.57K1-120[»]
3PO2X-ray3.30K1-120[»]
3PO3X-ray3.30K1-120[»]
3QT1X-ray4.30K1-120[»]
3RZDX-ray3.30K1-120[»]
3RZOX-ray3.00K1-120[»]
3S14X-ray2.85K1-120[»]
3S15X-ray3.30K1-120[»]
3S16X-ray3.24K1-120[»]
3S17X-ray3.20K1-120[»]
3S1MX-ray3.13K1-120[»]
3S1NX-ray3.10K1-120[»]
3S1QX-ray3.30K1-120[»]
3S1RX-ray3.20K1-120[»]
3S2DX-ray3.20K1-120[»]
3S2HX-ray3.30K1-120[»]
4A3BX-ray3.50K1-120[»]
4A3CX-ray3.50K1-120[»]
4A3DX-ray3.40K1-120[»]
4A3EX-ray3.40K1-120[»]
4A3FX-ray3.50K1-120[»]
4A3GX-ray3.50K1-120[»]
4A3IX-ray3.80K1-120[»]
4A3JX-ray3.70K1-120[»]
4A3KX-ray3.50K1-120[»]
4A3LX-ray3.50K1-120[»]
4A3MX-ray3.90K1-120[»]
4A93X-ray3.40K1-120[»]
4BBRX-ray3.40K1-120[»]
4BBSX-ray3.60K1-120[»]
4BXXX-ray3.28K1-120[»]
4BXZX-ray4.80K1-120[»]
4BY1X-ray3.60K1-120[»]
4BY7X-ray3.15K1-120[»]
ProteinModelPortaliP38902.
SMRiP38902. Positions 1-114.

Miscellaneous databases

EvolutionaryTraceiP38902.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1761.
GeneTreeiENSGT00550000074975.
HOGENOMiHOG000179862.
KOiK03008.
OMAiFAAYKVE.
OrthoDBiEOG7T4MZH.

Family and domain databases

InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P38902-1 [UniParc]FASTAAdd to Basket

« Hide

MNAPDRFELF LLGEGESKLK IDPDTKAPNA VVITFEKEDH TLGNLIRAEL    50
LNDRKVLFAA YKVEHPFFAR FKLRIQTTEG YDPKDALKNA CNSIINKLGA 100
LKTNFETEWN LQTLAADDAF 120
Length:120
Mass (Da):13,616
Last modified:February 1, 1995 - v1
Checksum:iA98D109C5FF8E356
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
S62624 Genomic DNA. Translation: AAB27135.1.
Z74747 Genomic DNA. Translation: CAA99004.1.
AY557998 Genomic DNA. Translation: AAS56324.1.
BK006948 Genomic DNA. Translation: DAA10778.1.
PIRiS58933.
RefSeqiNP_014638.1. NM_001183259.1.

Genome annotation databases

EnsemblFungiiYOL005C; YOL005C; YOL005C.
GeneIDi854157.
KEGGisce:YOL005C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
S62624 Genomic DNA. Translation: AAB27135.1 .
Z74747 Genomic DNA. Translation: CAA99004.1 .
AY557998 Genomic DNA. Translation: AAS56324.1 .
BK006948 Genomic DNA. Translation: DAA10778.1 .
PIRi S58933.
RefSeqi NP_014638.1. NM_001183259.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1I3Q X-ray 3.10 K 1-120 [» ]
1I50 X-ray 2.80 K 1-120 [» ]
1I6H X-ray 3.30 K 1-120 [» ]
1K83 X-ray 2.80 K 1-120 [» ]
1NIK X-ray 4.10 K 1-120 [» ]
1NT9 X-ray 4.20 K 1-120 [» ]
1PQV X-ray 3.80 K 1-120 [» ]
1R5U X-ray 4.50 K 1-120 [» ]
1R9S X-ray 4.25 K 1-120 [» ]
1R9T X-ray 3.50 K 1-120 [» ]
1SFO X-ray 3.61 K 1-120 [» ]
1TWA X-ray 3.20 K 1-120 [» ]
1TWC X-ray 3.00 K 1-120 [» ]
1TWF X-ray 2.30 K 1-120 [» ]
1TWG X-ray 3.30 K 1-120 [» ]
1TWH X-ray 3.40 K 1-120 [» ]
1WCM X-ray 3.80 K 1-120 [» ]
1Y1V X-ray 3.80 K 1-120 [» ]
1Y1W X-ray 4.00 K 1-120 [» ]
1Y1Y X-ray 4.00 K 1-120 [» ]
1Y77 X-ray 4.50 K 1-120 [» ]
2B63 X-ray 3.80 K 1-120 [» ]
2B8K X-ray 4.15 K 1-120 [» ]
2E2H X-ray 3.95 K 1-120 [» ]
2E2I X-ray 3.41 K 1-120 [» ]
2E2J X-ray 3.50 K 1-120 [» ]
2JA5 X-ray 3.80 K 1-120 [» ]
2JA6 X-ray 4.00 K 1-120 [» ]
2JA7 X-ray 3.80 K/W 1-120 [» ]
2JA8 X-ray 3.80 K 1-120 [» ]
2NVQ X-ray 2.90 K 1-120 [» ]
2NVT X-ray 3.36 K 1-120 [» ]
2NVX X-ray 3.60 K 1-120 [» ]
2NVY X-ray 3.40 K 1-120 [» ]
2NVZ X-ray 4.30 K 1-120 [» ]
2R7Z X-ray 3.80 K 1-120 [» ]
2R92 X-ray 3.80 K 1-120 [» ]
2R93 X-ray 4.00 K 1-120 [» ]
2VUM X-ray 3.40 K 1-120 [» ]
2YU9 X-ray 3.40 K 1-120 [» ]
3CQZ X-ray 2.80 K 1-120 [» ]
3FKI X-ray 3.88 K 1-120 [» ]
3GTG X-ray 3.78 K 1-120 [» ]
3GTJ X-ray 3.42 K 1-120 [» ]
3GTK X-ray 3.80 K 1-120 [» ]
3GTL X-ray 3.38 K 1-120 [» ]
3GTM X-ray 3.80 K 1-120 [» ]
3GTO X-ray 4.00 K 1-120 [» ]
3GTP X-ray 3.90 K 1-120 [» ]
3GTQ X-ray 3.80 K 1-120 [» ]
3H3V X-ray 4.00 L 1-120 [» ]
3HOU X-ray 3.20 K/W 1-120 [» ]
3HOV X-ray 3.50 K 1-120 [» ]
3HOW X-ray 3.60 K 1-120 [» ]
3HOX X-ray 3.65 K 1-120 [» ]
3HOY X-ray 3.40 K 1-120 [» ]
3HOZ X-ray 3.65 K 1-120 [» ]
3I4M X-ray 3.70 K 1-120 [» ]
3I4N X-ray 3.90 K 1-120 [» ]
3J0K electron microscopy 36.00 K 1-120 [» ]
3J1N electron microscopy 16.00 K 1-120 [» ]
3K1F X-ray 4.30 K 1-120 [» ]
3K7A X-ray 3.80 K 1-120 [» ]
3M3Y X-ray 3.18 K 1-120 [» ]
3M4O X-ray 3.57 K 1-120 [» ]
3PO2 X-ray 3.30 K 1-120 [» ]
3PO3 X-ray 3.30 K 1-120 [» ]
3QT1 X-ray 4.30 K 1-120 [» ]
3RZD X-ray 3.30 K 1-120 [» ]
3RZO X-ray 3.00 K 1-120 [» ]
3S14 X-ray 2.85 K 1-120 [» ]
3S15 X-ray 3.30 K 1-120 [» ]
3S16 X-ray 3.24 K 1-120 [» ]
3S17 X-ray 3.20 K 1-120 [» ]
3S1M X-ray 3.13 K 1-120 [» ]
3S1N X-ray 3.10 K 1-120 [» ]
3S1Q X-ray 3.30 K 1-120 [» ]
3S1R X-ray 3.20 K 1-120 [» ]
3S2D X-ray 3.20 K 1-120 [» ]
3S2H X-ray 3.30 K 1-120 [» ]
4A3B X-ray 3.50 K 1-120 [» ]
4A3C X-ray 3.50 K 1-120 [» ]
4A3D X-ray 3.40 K 1-120 [» ]
4A3E X-ray 3.40 K 1-120 [» ]
4A3F X-ray 3.50 K 1-120 [» ]
4A3G X-ray 3.50 K 1-120 [» ]
4A3I X-ray 3.80 K 1-120 [» ]
4A3J X-ray 3.70 K 1-120 [» ]
4A3K X-ray 3.50 K 1-120 [» ]
4A3L X-ray 3.50 K 1-120 [» ]
4A3M X-ray 3.90 K 1-120 [» ]
4A93 X-ray 3.40 K 1-120 [» ]
4BBR X-ray 3.40 K 1-120 [» ]
4BBS X-ray 3.60 K 1-120 [» ]
4BXX X-ray 3.28 K 1-120 [» ]
4BXZ X-ray 4.80 K 1-120 [» ]
4BY1 X-ray 3.60 K 1-120 [» ]
4BY7 X-ray 3.15 K 1-120 [» ]
ProteinModelPortali P38902.
SMRi P38902. Positions 1-114.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 34399. 50 interactions.
DIPi DIP-937N.
IntActi P38902. 15 interactions.
MINTi MINT-618340.
STRINGi 4932.YOL005C.

Proteomic databases

MaxQBi P38902.
PaxDbi P38902.
PeptideAtlasi P38902.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YOL005C ; YOL005C ; YOL005C .
GeneIDi 854157.
KEGGi sce:YOL005C.

Organism-specific databases

CYGDi YOL005c.
SGDi S000005365. RPB11.

Phylogenomic databases

eggNOGi COG1761.
GeneTreei ENSGT00550000074975.
HOGENOMi HOG000179862.
KOi K03008.
OMAi FAAYKVE.
OrthoDBi EOG7T4MZH.

Enzyme and pathway databases

BioCyci YEAST:G3O-33422-MONOMER.
Reactomei REACT_191540. mRNA Splicing - Minor Pathway.

Miscellaneous databases

EvolutionaryTracei P38902.
NextBioi 975923.
PROi P38902.

Gene expression databases

Genevestigatori P38902.

Family and domain databases

InterProi IPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
[Graphical view ]
SUPFAMi SSF55257. SSF55257. 1 hit.
PROSITEi PS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III."
    Woychik N.A., McKune K., Lane W.S., Young R.A.
    Gene Expr. 3:77-82(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 27-37; 75-84; 98-102 AND 103-116.
    Strain: X2180-2.
  2. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XV."
    Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W., Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R., Boyer J., Camasses A., Casamayor A., Casas C., Cheret G., Cziepluch C., Daignan-Fornier B., Dang V.-D.
    , de Haan M., Delius H., Durand P., Fairhead C., Feldmann H., Gaillon L., Galisson F., Gamo F.-J., Gancedo C., Goffeau A., Goulding S.E., Grivell L.A., Habbig B., Hand N.J., Hani J., Hattenhorst U., Hebling U., Hernando Y., Herrero E., Heumann K., Hiesel R., Hilger F., Hofmann B., Hollenberg C.P., Hughes B., Jauniaux J.-C., Kalogeropoulos A., Katsoulou C., Kordes E., Lafuente M.J., Landt O., Louis E.J., Maarse A.C., Madania A., Mannhaupt G., Marck C., Martin R.P., Mewes H.-W., Michaux G., Paces V., Parle-McDermott A.G., Pearson B.M., Perrin A., Pettersson B., Poch O., Pohl T.M., Poirey R., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rechmann S., Schwager C., Schweizer M., Sor F., Sterky F., Tarassov I.A., Teodoru C., Tettelin H., Thierry A., Tobiasch E., Tzermia M., Uhlen M., Unseld M., Valens M., Vandenbol M., Vetter I., Vlcek C., Voet M., Volckaert G., Voss H., Wambutt R., Wedler H., Wiemann S., Winsor B., Wolfe K.H., Zollner A., Zumstein E., Kleine K.
    Nature 387:98-102(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  6. "cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II."
    Steinmetz E.J., Ng S.B., Cloute J.P., Brow D.A.
    Mol. Cell. Biol. 26:2688-2696(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, MUTAGENESIS OF GLU-108; LEU-111 AND LEU-114.
  7. "RNA polymerase II/TFIIF structure and conserved organization of the initiation complex."
    Chung W.H., Craighead J.L., Chang W.H., Ezeokonkwo C., Bareket-Samish A., Kornberg R.D., Asturias F.J.
    Mol. Cell 12:1003-1013(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: ELECTRON MICROSCOPY OF THE RNA POL II/TFIIF COMPLEX.
  8. "Structural basis of transcription: RNA polymerase II at 2.8 A resolution."
    Cramer P., Bushnell D.A., Kornberg R.D.
    Science 292:1863-1876(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  9. "Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution."
    Gnatt A.L., Cramer P., Fu J., Bushnell D.A., Kornberg R.D.
    Science 292:1876-1882(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  10. "Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution."
    Bushnell D.A., Cramer P., Kornberg R.D.
    Proc. Natl. Acad. Sci. U.S.A. 99:1218-1222(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX IN COMPLEX WITH ALPHA-AMANITIN.
  11. "Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage."
    Kettenberger H., Armache K.J., Cramer P.
    Cell 114:347-357(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH DST1.
  12. "Architecture of initiation-competent 12-subunit RNA polymerase II."
    Armache K.J., Kettenberger H., Cramer P.
    Proc. Natl. Acad. Sci. U.S.A. 100:6964-6968(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.2 ANGSTROMS) OF THE RNA POL II COMPLEX.
  13. "Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription."
    Bushnell D.A., Kornberg R.D.
    Proc. Natl. Acad. Sci. U.S.A. 100:6969-6973(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.1 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  14. "Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center."
    Westover K.D., Bushnell D.A., Kornberg R.D.
    Cell 119:481-489(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  15. "Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS."
    Kettenberger H., Armache K.J., Cramer P.
    Mol. Cell 16:955-965(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS).
  16. "Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms."
    Bushnell D.A., Westover K.D., Davis R.E., Kornberg R.D.
    Science 303:983-988(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  17. "Structures of complete RNA polymerase II and its subcomplex, Rpb4/7."
    Armache K.J., Mitterweger S., Meinhart A., Cramer P.
    J. Biol. Chem. 280:7131-7134(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX.
  18. "Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs."
    Kettenberger H., Eisenfuhr A., Brueckner F., Theis M., Famulok M., Cramer P.
    Nat. Struct. Mol. Biol. 13:44-48(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH INHIBITING NON-CODING RNA.
  19. "Phasing RNA polymerase II using intrinsically bound Zn atoms: an updated structural model."
    Meyer P.A., Ye P., Zhang M., Suh M.H., Fu J.
    Structure 14:973-982(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.15 ANGSTROMS) OF THE RNA POL II COMPLEX.

Entry informationi

Entry nameiRPB11_YEAST
AccessioniPrimary (citable) accession number: P38902
Secondary accession number(s): D6W262
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: September 3, 2014
This is version 138 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 4280 molecules/cell in log phase SD medium.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome XV
    Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names

External Data

Dasty 3

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