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P38902

- RPB11_YEAST

UniProt

P38902 - RPB11_YEAST

Protein

DNA-directed RNA polymerase II subunit RPB11

Gene

RPB11

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 139 (01 Oct 2014)
      Sequence version 1 (01 Feb 1995)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft. Seems to be involved transcript termination.1 Publication

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
    3. protein binding Source: IntAct

    GO - Biological processi

    1. termination of RNA polymerase II transcription Source: SGD
    2. transcription, RNA-templated Source: GOC
    3. transcription from RNA polymerase II promoter Source: SGD

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciYEAST:G3O-33422-MONOMER.
    ReactomeiREACT_191540. mRNA Splicing - Minor Pathway.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase II subunit RPB11
    Short name:
    RNA polymerase II subunit B11
    Alternative name(s):
    B13.6
    DNA-directed RNA polymerase II 13.6 kDa polypeptide
    Gene namesi
    Name:RPB11
    Ordered Locus Names:YOL005C
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome XV

    Organism-specific databases

    CYGDiYOL005c.
    SGDiS000005365. RPB11.

    Subcellular locationi

    GO - Cellular componenti

    1. DNA-directed RNA polymerase II, core complex Source: SGD

    Keywords - Cellular componenti

    DNA-directed RNA polymerase, Nucleus

    Pathology & Biotechi

    Mutagenesis

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Mutagenesisi108 – 1081E → G or V: Transcript termination readthrough. 1 Publication
    Mutagenesisi108 – 1081E → K: Transcript termination readthrough. Lethal. 1 Publication
    Mutagenesisi111 – 1111L → P: Transcript termination readthrough. 1 Publication
    Mutagenesisi114 – 1141L → P: Transcript termination readthrough. 1 Publication

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 120120DNA-directed RNA polymerase II subunit RPB11PRO_0000149315Add
    BLAST

    Proteomic databases

    MaxQBiP38902.
    PaxDbiP38902.
    PeptideAtlasiP38902.

    Expressioni

    Gene expression databases

    GenevestigatoriP38902.

    Interactioni

    Subunit structurei

    Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.3 Publications

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    RPB3P163704EBI-15806,EBI-15773

    Protein-protein interaction databases

    BioGridi34399. 50 interactions.
    DIPiDIP-937N.
    IntActiP38902. 15 interactions.
    MINTiMINT-618340.
    STRINGi4932.YOL005C.

    Structurei

    Secondary structure

    1
    120
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi7 – 93
    Beta strandi18 – 203
    Beta strandi21 – 233
    Beta strandi25 – 273
    Beta strandi30 – 378
    Helixi40 – 5011
    Beta strandi51 – 533
    Beta strandi56 – 627
    Beta strandi66 – 683
    Beta strandi70 – 778
    Helixi83 – 10826
    Turni109 – 1113

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1I3QX-ray3.10K1-120[»]
    1I50X-ray2.80K1-120[»]
    1I6HX-ray3.30K1-120[»]
    1K83X-ray2.80K1-120[»]
    1NIKX-ray4.10K1-120[»]
    1NT9X-ray4.20K1-120[»]
    1PQVX-ray3.80K1-120[»]
    1R5UX-ray4.50K1-120[»]
    1R9SX-ray4.25K1-120[»]
    1R9TX-ray3.50K1-120[»]
    1SFOX-ray3.61K1-120[»]
    1TWAX-ray3.20K1-120[»]
    1TWCX-ray3.00K1-120[»]
    1TWFX-ray2.30K1-120[»]
    1TWGX-ray3.30K1-120[»]
    1TWHX-ray3.40K1-120[»]
    1WCMX-ray3.80K1-120[»]
    1Y1VX-ray3.80K1-120[»]
    1Y1WX-ray4.00K1-120[»]
    1Y1YX-ray4.00K1-120[»]
    1Y77X-ray4.50K1-120[»]
    2B63X-ray3.80K1-120[»]
    2B8KX-ray4.15K1-120[»]
    2E2HX-ray3.95K1-120[»]
    2E2IX-ray3.41K1-120[»]
    2E2JX-ray3.50K1-120[»]
    2JA5X-ray3.80K1-120[»]
    2JA6X-ray4.00K1-120[»]
    2JA7X-ray3.80K/W1-120[»]
    2JA8X-ray3.80K1-120[»]
    2NVQX-ray2.90K1-120[»]
    2NVTX-ray3.36K1-120[»]
    2NVXX-ray3.60K1-120[»]
    2NVYX-ray3.40K1-120[»]
    2NVZX-ray4.30K1-120[»]
    2R7ZX-ray3.80K1-120[»]
    2R92X-ray3.80K1-120[»]
    2R93X-ray4.00K1-120[»]
    2VUMX-ray3.40K1-120[»]
    2YU9X-ray3.40K1-120[»]
    3CQZX-ray2.80K1-120[»]
    3FKIX-ray3.88K1-120[»]
    3GTGX-ray3.78K1-120[»]
    3GTJX-ray3.42K1-120[»]
    3GTKX-ray3.80K1-120[»]
    3GTLX-ray3.38K1-120[»]
    3GTMX-ray3.80K1-120[»]
    3GTOX-ray4.00K1-120[»]
    3GTPX-ray3.90K1-120[»]
    3GTQX-ray3.80K1-120[»]
    3H3VX-ray4.00L1-120[»]
    3HOUX-ray3.20K/W1-120[»]
    3HOVX-ray3.50K1-120[»]
    3HOWX-ray3.60K1-120[»]
    3HOXX-ray3.65K1-120[»]
    3HOYX-ray3.40K1-120[»]
    3HOZX-ray3.65K1-120[»]
    3I4MX-ray3.70K1-120[»]
    3I4NX-ray3.90K1-120[»]
    3J0Kelectron microscopy36.00K1-120[»]
    3J1Nelectron microscopy16.00K1-120[»]
    3K1FX-ray4.30K1-120[»]
    3K7AX-ray3.80K1-120[»]
    3M3YX-ray3.18K1-120[»]
    3M4OX-ray3.57K1-120[»]
    3PO2X-ray3.30K1-120[»]
    3PO3X-ray3.30K1-120[»]
    3QT1X-ray4.30K1-120[»]
    3RZDX-ray3.30K1-120[»]
    3RZOX-ray3.00K1-120[»]
    3S14X-ray2.85K1-120[»]
    3S15X-ray3.30K1-120[»]
    3S16X-ray3.24K1-120[»]
    3S17X-ray3.20K1-120[»]
    3S1MX-ray3.13K1-120[»]
    3S1NX-ray3.10K1-120[»]
    3S1QX-ray3.30K1-120[»]
    3S1RX-ray3.20K1-120[»]
    3S2DX-ray3.20K1-120[»]
    3S2HX-ray3.30K1-120[»]
    4A3BX-ray3.50K1-120[»]
    4A3CX-ray3.50K1-120[»]
    4A3DX-ray3.40K1-120[»]
    4A3EX-ray3.40K1-120[»]
    4A3FX-ray3.50K1-120[»]
    4A3GX-ray3.50K1-120[»]
    4A3IX-ray3.80K1-120[»]
    4A3JX-ray3.70K1-120[»]
    4A3KX-ray3.50K1-120[»]
    4A3LX-ray3.50K1-120[»]
    4A3MX-ray3.90K1-120[»]
    4A93X-ray3.40K1-120[»]
    4BBRX-ray3.40K1-120[»]
    4BBSX-ray3.60K1-120[»]
    4BXXX-ray3.28K1-120[»]
    4BXZX-ray4.80K1-120[»]
    4BY1X-ray3.60K1-120[»]
    4BY7X-ray3.15K1-120[»]
    ProteinModelPortaliP38902.
    SMRiP38902. Positions 1-114.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP38902.

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1761.
    GeneTreeiENSGT00550000074975.
    HOGENOMiHOG000179862.
    KOiK03008.
    OMAiFAAYKVE.
    OrthoDBiEOG7T4MZH.

    Family and domain databases

    InterProiIPR009025. RBP11-like_dimer.
    IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
    [Graphical view]
    SUPFAMiSSF55257. SSF55257. 1 hit.
    PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P38902-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNAPDRFELF LLGEGESKLK IDPDTKAPNA VVITFEKEDH TLGNLIRAEL    50
    LNDRKVLFAA YKVEHPFFAR FKLRIQTTEG YDPKDALKNA CNSIINKLGA 100
    LKTNFETEWN LQTLAADDAF 120
    Length:120
    Mass (Da):13,616
    Last modified:February 1, 1995 - v1
    Checksum:iA98D109C5FF8E356
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    S62624 Genomic DNA. Translation: AAB27135.1.
    Z74747 Genomic DNA. Translation: CAA99004.1.
    AY557998 Genomic DNA. Translation: AAS56324.1.
    BK006948 Genomic DNA. Translation: DAA10778.1.
    PIRiS58933.
    RefSeqiNP_014638.1. NM_001183259.1.

    Genome annotation databases

    EnsemblFungiiYOL005C; YOL005C; YOL005C.
    GeneIDi854157.
    KEGGisce:YOL005C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    S62624 Genomic DNA. Translation: AAB27135.1 .
    Z74747 Genomic DNA. Translation: CAA99004.1 .
    AY557998 Genomic DNA. Translation: AAS56324.1 .
    BK006948 Genomic DNA. Translation: DAA10778.1 .
    PIRi S58933.
    RefSeqi NP_014638.1. NM_001183259.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1I3Q X-ray 3.10 K 1-120 [» ]
    1I50 X-ray 2.80 K 1-120 [» ]
    1I6H X-ray 3.30 K 1-120 [» ]
    1K83 X-ray 2.80 K 1-120 [» ]
    1NIK X-ray 4.10 K 1-120 [» ]
    1NT9 X-ray 4.20 K 1-120 [» ]
    1PQV X-ray 3.80 K 1-120 [» ]
    1R5U X-ray 4.50 K 1-120 [» ]
    1R9S X-ray 4.25 K 1-120 [» ]
    1R9T X-ray 3.50 K 1-120 [» ]
    1SFO X-ray 3.61 K 1-120 [» ]
    1TWA X-ray 3.20 K 1-120 [» ]
    1TWC X-ray 3.00 K 1-120 [» ]
    1TWF X-ray 2.30 K 1-120 [» ]
    1TWG X-ray 3.30 K 1-120 [» ]
    1TWH X-ray 3.40 K 1-120 [» ]
    1WCM X-ray 3.80 K 1-120 [» ]
    1Y1V X-ray 3.80 K 1-120 [» ]
    1Y1W X-ray 4.00 K 1-120 [» ]
    1Y1Y X-ray 4.00 K 1-120 [» ]
    1Y77 X-ray 4.50 K 1-120 [» ]
    2B63 X-ray 3.80 K 1-120 [» ]
    2B8K X-ray 4.15 K 1-120 [» ]
    2E2H X-ray 3.95 K 1-120 [» ]
    2E2I X-ray 3.41 K 1-120 [» ]
    2E2J X-ray 3.50 K 1-120 [» ]
    2JA5 X-ray 3.80 K 1-120 [» ]
    2JA6 X-ray 4.00 K 1-120 [» ]
    2JA7 X-ray 3.80 K/W 1-120 [» ]
    2JA8 X-ray 3.80 K 1-120 [» ]
    2NVQ X-ray 2.90 K 1-120 [» ]
    2NVT X-ray 3.36 K 1-120 [» ]
    2NVX X-ray 3.60 K 1-120 [» ]
    2NVY X-ray 3.40 K 1-120 [» ]
    2NVZ X-ray 4.30 K 1-120 [» ]
    2R7Z X-ray 3.80 K 1-120 [» ]
    2R92 X-ray 3.80 K 1-120 [» ]
    2R93 X-ray 4.00 K 1-120 [» ]
    2VUM X-ray 3.40 K 1-120 [» ]
    2YU9 X-ray 3.40 K 1-120 [» ]
    3CQZ X-ray 2.80 K 1-120 [» ]
    3FKI X-ray 3.88 K 1-120 [» ]
    3GTG X-ray 3.78 K 1-120 [» ]
    3GTJ X-ray 3.42 K 1-120 [» ]
    3GTK X-ray 3.80 K 1-120 [» ]
    3GTL X-ray 3.38 K 1-120 [» ]
    3GTM X-ray 3.80 K 1-120 [» ]
    3GTO X-ray 4.00 K 1-120 [» ]
    3GTP X-ray 3.90 K 1-120 [» ]
    3GTQ X-ray 3.80 K 1-120 [» ]
    3H3V X-ray 4.00 L 1-120 [» ]
    3HOU X-ray 3.20 K/W 1-120 [» ]
    3HOV X-ray 3.50 K 1-120 [» ]
    3HOW X-ray 3.60 K 1-120 [» ]
    3HOX X-ray 3.65 K 1-120 [» ]
    3HOY X-ray 3.40 K 1-120 [» ]
    3HOZ X-ray 3.65 K 1-120 [» ]
    3I4M X-ray 3.70 K 1-120 [» ]
    3I4N X-ray 3.90 K 1-120 [» ]
    3J0K electron microscopy 36.00 K 1-120 [» ]
    3J1N electron microscopy 16.00 K 1-120 [» ]
    3K1F X-ray 4.30 K 1-120 [» ]
    3K7A X-ray 3.80 K 1-120 [» ]
    3M3Y X-ray 3.18 K 1-120 [» ]
    3M4O X-ray 3.57 K 1-120 [» ]
    3PO2 X-ray 3.30 K 1-120 [» ]
    3PO3 X-ray 3.30 K 1-120 [» ]
    3QT1 X-ray 4.30 K 1-120 [» ]
    3RZD X-ray 3.30 K 1-120 [» ]
    3RZO X-ray 3.00 K 1-120 [» ]
    3S14 X-ray 2.85 K 1-120 [» ]
    3S15 X-ray 3.30 K 1-120 [» ]
    3S16 X-ray 3.24 K 1-120 [» ]
    3S17 X-ray 3.20 K 1-120 [» ]
    3S1M X-ray 3.13 K 1-120 [» ]
    3S1N X-ray 3.10 K 1-120 [» ]
    3S1Q X-ray 3.30 K 1-120 [» ]
    3S1R X-ray 3.20 K 1-120 [» ]
    3S2D X-ray 3.20 K 1-120 [» ]
    3S2H X-ray 3.30 K 1-120 [» ]
    4A3B X-ray 3.50 K 1-120 [» ]
    4A3C X-ray 3.50 K 1-120 [» ]
    4A3D X-ray 3.40 K 1-120 [» ]
    4A3E X-ray 3.40 K 1-120 [» ]
    4A3F X-ray 3.50 K 1-120 [» ]
    4A3G X-ray 3.50 K 1-120 [» ]
    4A3I X-ray 3.80 K 1-120 [» ]
    4A3J X-ray 3.70 K 1-120 [» ]
    4A3K X-ray 3.50 K 1-120 [» ]
    4A3L X-ray 3.50 K 1-120 [» ]
    4A3M X-ray 3.90 K 1-120 [» ]
    4A93 X-ray 3.40 K 1-120 [» ]
    4BBR X-ray 3.40 K 1-120 [» ]
    4BBS X-ray 3.60 K 1-120 [» ]
    4BXX X-ray 3.28 K 1-120 [» ]
    4BXZ X-ray 4.80 K 1-120 [» ]
    4BY1 X-ray 3.60 K 1-120 [» ]
    4BY7 X-ray 3.15 K 1-120 [» ]
    ProteinModelPortali P38902.
    SMRi P38902. Positions 1-114.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 34399. 50 interactions.
    DIPi DIP-937N.
    IntActi P38902. 15 interactions.
    MINTi MINT-618340.
    STRINGi 4932.YOL005C.

    Proteomic databases

    MaxQBi P38902.
    PaxDbi P38902.
    PeptideAtlasi P38902.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YOL005C ; YOL005C ; YOL005C .
    GeneIDi 854157.
    KEGGi sce:YOL005C.

    Organism-specific databases

    CYGDi YOL005c.
    SGDi S000005365. RPB11.

    Phylogenomic databases

    eggNOGi COG1761.
    GeneTreei ENSGT00550000074975.
    HOGENOMi HOG000179862.
    KOi K03008.
    OMAi FAAYKVE.
    OrthoDBi EOG7T4MZH.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-33422-MONOMER.
    Reactomei REACT_191540. mRNA Splicing - Minor Pathway.

    Miscellaneous databases

    EvolutionaryTracei P38902.
    NextBioi 975923.
    PROi P38902.

    Gene expression databases

    Genevestigatori P38902.

    Family and domain databases

    InterProi IPR009025. RBP11-like_dimer.
    IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
    [Graphical view ]
    SUPFAMi SSF55257. SSF55257. 1 hit.
    PROSITEi PS01154. RNA_POL_L_13KD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III."
      Woychik N.A., McKune K., Lane W.S., Young R.A.
      Gene Expr. 3:77-82(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 27-37; 75-84; 98-102 AND 103-116.
      Strain: X2180-2.
    2. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XV."
      Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W., Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R., Boyer J., Camasses A., Casamayor A., Casas C., Cheret G., Cziepluch C., Daignan-Fornier B., Dang V.-D.
      , de Haan M., Delius H., Durand P., Fairhead C., Feldmann H., Gaillon L., Galisson F., Gamo F.-J., Gancedo C., Goffeau A., Goulding S.E., Grivell L.A., Habbig B., Hand N.J., Hani J., Hattenhorst U., Hebling U., Hernando Y., Herrero E., Heumann K., Hiesel R., Hilger F., Hofmann B., Hollenberg C.P., Hughes B., Jauniaux J.-C., Kalogeropoulos A., Katsoulou C., Kordes E., Lafuente M.J., Landt O., Louis E.J., Maarse A.C., Madania A., Mannhaupt G., Marck C., Martin R.P., Mewes H.-W., Michaux G., Paces V., Parle-McDermott A.G., Pearson B.M., Perrin A., Pettersson B., Poch O., Pohl T.M., Poirey R., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rechmann S., Schwager C., Schweizer M., Sor F., Sterky F., Tarassov I.A., Teodoru C., Tettelin H., Thierry A., Tobiasch E., Tzermia M., Uhlen M., Unseld M., Valens M., Vandenbol M., Vetter I., Vlcek C., Voet M., Volckaert G., Voss H., Wambutt R., Wedler H., Wiemann S., Winsor B., Wolfe K.H., Zollner A., Zumstein E., Kleine K.
      Nature 387:98-102(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    3. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    6. "cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II."
      Steinmetz E.J., Ng S.B., Cloute J.P., Brow D.A.
      Mol. Cell. Biol. 26:2688-2696(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, MUTAGENESIS OF GLU-108; LEU-111 AND LEU-114.
    7. "RNA polymerase II/TFIIF structure and conserved organization of the initiation complex."
      Chung W.H., Craighead J.L., Chang W.H., Ezeokonkwo C., Bareket-Samish A., Kornberg R.D., Asturias F.J.
      Mol. Cell 12:1003-1013(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: ELECTRON MICROSCOPY OF THE RNA POL II/TFIIF COMPLEX.
    8. "Structural basis of transcription: RNA polymerase II at 2.8 A resolution."
      Cramer P., Bushnell D.A., Kornberg R.D.
      Science 292:1863-1876(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
    9. "Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution."
      Gnatt A.L., Cramer P., Fu J., Bushnell D.A., Kornberg R.D.
      Science 292:1876-1882(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
    10. "Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution."
      Bushnell D.A., Cramer P., Kornberg R.D.
      Proc. Natl. Acad. Sci. U.S.A. 99:1218-1222(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX IN COMPLEX WITH ALPHA-AMANITIN.
    11. "Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage."
      Kettenberger H., Armache K.J., Cramer P.
      Cell 114:347-357(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH DST1.
    12. "Architecture of initiation-competent 12-subunit RNA polymerase II."
      Armache K.J., Kettenberger H., Cramer P.
      Proc. Natl. Acad. Sci. U.S.A. 100:6964-6968(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.2 ANGSTROMS) OF THE RNA POL II COMPLEX.
    13. "Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription."
      Bushnell D.A., Kornberg R.D.
      Proc. Natl. Acad. Sci. U.S.A. 100:6969-6973(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.1 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
    14. "Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center."
      Westover K.D., Bushnell D.A., Kornberg R.D.
      Cell 119:481-489(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
    15. "Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS."
      Kettenberger H., Armache K.J., Cramer P.
      Mol. Cell 16:955-965(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS).
    16. "Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms."
      Bushnell D.A., Westover K.D., Davis R.E., Kornberg R.D.
      Science 303:983-988(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
    17. "Structures of complete RNA polymerase II and its subcomplex, Rpb4/7."
      Armache K.J., Mitterweger S., Meinhart A., Cramer P.
      J. Biol. Chem. 280:7131-7134(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX.
    18. "Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs."
      Kettenberger H., Eisenfuhr A., Brueckner F., Theis M., Famulok M., Cramer P.
      Nat. Struct. Mol. Biol. 13:44-48(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH INHIBITING NON-CODING RNA.
    19. "Phasing RNA polymerase II using intrinsically bound Zn atoms: an updated structural model."
      Meyer P.A., Ye P., Zhang M., Suh M.H., Fu J.
      Structure 14:973-982(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (4.15 ANGSTROMS) OF THE RNA POL II COMPLEX.

    Entry informationi

    Entry nameiRPB11_YEAST
    AccessioniPrimary (citable) accession number: P38902
    Secondary accession number(s): D6W262
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: February 1, 1995
    Last modified: October 1, 2014
    This is version 139 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 4280 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome XV
      Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names

    External Data

    Dasty 3