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P38882

- UTP9_YEAST

UniProt

P38882 - UTP9_YEAST

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Protein

U3 small nucleolar RNA-associated protein 9

Gene

UTP9

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs).2 Publications

GO - Molecular functioni

  1. snoRNA binding Source: SGD

GO - Biological processi

  1. maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: SGD
  2. positive regulation of transcription from RNA polymerase I promoter Source: SGD
  3. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Ribosome biogenesis, rRNA processing, Transcription

Enzyme and pathway databases

BioCyciYEAST:G3O-31224-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
U3 small nucleolar RNA-associated protein 9
Short name:
U3 snoRNA-associated protein 9
Alternative name(s):
U three protein 9
U3 protein 9 required for transcription
t-UTP9
Gene namesi
Name:UTP9
Ordered Locus Names:YHR196W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VIII

Organism-specific databases

CYGDiYHR196w.
SGDiS000001239. UTP9.

Subcellular locationi

Nucleusnucleolus 2 Publications
Note: Associated with ribosomal chromatin, even in the absence of transcription.

GO - Cellular componenti

  1. nucleolus Source: SGD
  2. rDNA heterochromatin Source: SGD
  3. small-subunit processome Source: SGD
  4. t-UTP complex Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 575575U3 small nucleolar RNA-associated protein 9PRO_0000065744Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei547 – 5471Phosphoserine1 Publication
Modified residuei564 – 5641Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP38882.
PaxDbiP38882.
PeptideAtlasiP38882.

Expressioni

Gene expression databases

GenevestigatoriP38882.

Interactioni

Subunit structurei

Interacts with snoRNA U3. Interacts with MPP10. Component of the ribosomal small subunit (SSU) processome composed of at least 40 protein subunits and snoRNA U3. In the absence of snoRNA3, forms a complex with other t-UTPs. This complex can associate with pre-18S ribosomal RNAs.2 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
UTP15Q043054EBI-24892,EBI-28183
UTP8P532763EBI-24892,EBI-23301

Protein-protein interaction databases

BioGridi36630. 93 interactions.
DIPiDIP-6634N.
IntActiP38882. 52 interactions.
MINTiMINT-628324.
STRINGi4932.YHR196W.

Structurei

3D structure databases

ProteinModelPortaliP38882.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG47655.
HOGENOMiHOG000000891.
InParanoidiP38882.
KOiK14551.
OMAiSHIDYET.
OrthoDBiEOG7BZW27.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P38882-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGSSLDLVAS FSHDSTRFAF QASVAQKNNV DIYPLNETKD YVVNSSLVSH
60 70 80 90 100
IDYETNDMKV SDVIFFGWCS DLIDTQSSNI KRKLDEDEGT GESSEQRCEN
110 120 130 140 150
FFVNGFPDGR IVVYSSNGKD IVNIIKNKKE ILGADTDESD IWILDSDKVV
160 170 180 190 200
KKLQYNNSKP LKTFTLVDGK DDEIVHFQIL HQNGTLLVCI ITKQMVYIVD
210 220 230 240 250
PSKRRPSTKY SFEISDAVAC EFSSDGKYLL IANNEELIAY DLKEDSKLIQ
260 270 280 290 300
SWPVQVKTLK TLDDLIMALT TDGKINNYKI GEADKVCSIV VNEDLEIIDF
310 320 330 340 350
TPINSKQQVL ISWLNVNEPN FESISLKEIE TQGYITINKN EKNNADEADQ
360 370 380 390 400
KKLEEKEEEA QPEVQHEKKE TETKINKKVS KSDQVEIANI LSSHLEANST
410 420 430 440 450
EILDDLMSGS WTEPEIKKFI LTKINTVDHL SKIFLTISKS ITQNPWNEEN
460 470 480 490 500
LLPLWLKWLL TLKSGELNSI KDKHTKKNCK HLKSALRSSE EILPVLLGIQ
510 520 530 540 550
GRLEMLRRQA KLREDLAQLS MQEGEDDEIE VIEHSNVISN PLQDQASPVE
560 570
KLEPDSIVYA NGESDEFVDA SEYKD
Length:575
Mass (Da):65,271
Last modified:February 1, 1995 - v1
Checksum:i0C482C6A32855FF1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00030 Genomic DNA. Translation: AAB68369.1.
BK006934 Genomic DNA. Translation: DAA06888.1.
PIRiS46692.
RefSeqiNP_012066.1. NM_001179327.1.

Genome annotation databases

EnsemblFungiiYHR196W; YHR196W; YHR196W.
GeneIDi856603.
KEGGisce:YHR196W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00030 Genomic DNA. Translation: AAB68369.1 .
BK006934 Genomic DNA. Translation: DAA06888.1 .
PIRi S46692.
RefSeqi NP_012066.1. NM_001179327.1.

3D structure databases

ProteinModelPortali P38882.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 36630. 93 interactions.
DIPi DIP-6634N.
IntActi P38882. 52 interactions.
MINTi MINT-628324.
STRINGi 4932.YHR196W.

Proteomic databases

MaxQBi P38882.
PaxDbi P38882.
PeptideAtlasi P38882.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YHR196W ; YHR196W ; YHR196W .
GeneIDi 856603.
KEGGi sce:YHR196W.

Organism-specific databases

CYGDi YHR196w.
SGDi S000001239. UTP9.

Phylogenomic databases

eggNOGi NOG47655.
HOGENOMi HOG000000891.
InParanoidi P38882.
KOi K14551.
OMAi SHIDYET.
OrthoDBi EOG7BZW27.

Enzyme and pathway databases

BioCyci YEAST:G3O-31224-MONOMER.

Miscellaneous databases

NextBioi 982505.

Gene expression databases

Genevestigatori P38882.

Family and domain databases

Gene3Di 2.130.10.10. 1 hit.
InterProi IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: FUNCTION, INTERACTION WITH MPP10 AND SNORNA U3, IDENTIFICATION IN SSU PROCESSOME BY MASS SPECTROMETRY, SUBCELLULAR LOCATION.
  4. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  5. "RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components."
    Gallagher J.E.G., Dunbar D.A., Granneman S., Mitchell B.M., Osheim Y., Beyer A.L., Baserga S.J.
    Genes Dev. 18:2506-2517(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, IDENTIFICATION IN COMPLEX WITH OTHER T-UTPS, SUBCELLULAR LOCATION.
  6. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-547 AND SER-564, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiUTP9_YEAST
AccessioniPrimary (citable) accession number: P38882
Secondary accession number(s): D3DLE4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: October 29, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 20000 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

External Data

Dasty 3