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P38810

- SFB3_YEAST

UniProt

P38810 - SFB3_YEAST

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Protein
SED5-binding protein 3
Gene
SFB3, LST1, YHR098C
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

GO - Molecular functioni

  1. signal sequence binding Source: SGD
  2. zinc ion binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. cargo loading into COPII-coated vesicle Source: SGD
  2. intracellular protein transport Source: InterPro
Complete GO annotation...

Keywords - Biological processi

ER-Golgi transport, Protein transport, Transport

Enzyme and pathway databases

BioCyciYEAST:G3O-31143-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
SED5-binding protein 3
Alternative name(s):
Lethal with SEC13 protein 1
SEC24-related protein 3
Gene namesi
Name:SFB3
Synonyms:LST1
Ordered Locus Names:YHR098C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VIII

Organism-specific databases

CYGDiYHR098c.
SGDiS000001140. SFB3.

Subcellular locationi

Cytoplasm By similarity. Golgi apparatus membrane By similarity. Endoplasmic reticulum membrane By similarity

GO - Cellular componenti

  1. COPII vesicle coat Source: SGD
  2. Golgi membrane Source: UniProtKB-SubCell
  3. endoplasmic reticulum membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Endoplasmic reticulum, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 929929SED5-binding protein 3
PRO_0000205152Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei15 – 151Phosphoserine1 Publication
Modified residuei72 – 721Phosphothreonine1 Publication
Modified residuei83 – 831Phosphoserine1 Publication
Modified residuei85 – 851Phosphoserine1 Publication
Modified residuei94 – 941Phosphoserine1 Publication
Modified residuei101 – 1011Phosphoserine3 Publications
Modified residuei110 – 1101Phosphoserine1 Publication
Modified residuei216 – 2161Phosphothreonine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP38810.
PaxDbiP38810.
PeptideAtlasiP38810.

Expressioni

Gene expression databases

GenevestigatoriP38810.

Interactioni

Subunit structurei

COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex and SAR1. Binds to SED5. Interacts with GHR1.1 Publication

Protein-protein interaction databases

BioGridi36531. 22 interactions.
DIPiDIP-2949N.
IntActiP38810. 10 interactions.
MINTiMINT-509354.
STRINGi4932.YHR098C.

Structurei

3D structure databases

ProteinModelPortaliP38810.
SMRiP38810. Positions 125-905.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni220 – 24425Zinc finger-like
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG5028.
HOGENOMiHOG000141722.
OMAiATHENIH.
OrthoDBiEOG71K6BX.

Family and domain databases

Gene3Di3.40.20.10. 1 hit.
3.40.50.410. 1 hit.
InterProiIPR029006. ADF-H/Gelsolin-like_dom.
IPR007123. Gelsolin-like_dom.
IPR006900. Sec23/24_helical_dom.
IPR006896. Sec23/24_trunk_dom.
IPR012990. Sec23_24_beta_S.
IPR002035. VWF_A.
IPR006895. Znf_Sec23_Sec24.
[Graphical view]
PfamiPF00626. Gelsolin. 1 hit.
PF08033. Sec23_BS. 1 hit.
PF04815. Sec23_helical. 1 hit.
PF04811. Sec23_trunk. 1 hit.
PF04810. zf-Sec23_Sec24. 1 hit.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 1 hit.
SSF81811. SSF81811. 1 hit.
SSF82919. SSF82919. 1 hit.

Sequencei

Sequence statusi: Complete.

P38810-1 [UniParc]FASTAAdd to Basket

« Hide

MSQQNILAAS VSALSLDEST VHTGGASSKK SRRPHRAYHN FSSGTVPTLG    50
NSPYTTPQLN QQDGFQQPQA FTPKQFGGFN NGSGSVMSTP VMVSQERFGA 100
SEASSPYGQS MLDMTAPQPT SHIVPTQRFE DQAQYLQRSF ETCRDSVPPL 150
PTTQFYCVDQ GSCDPHLMSL SMYNIPESEH LRAATKLPLG LTIQPFSTLT 200
PNDAEVPTIP LPMDGTPLRC RRCRAYANPK FQFTYDSSVI CNICRVKMQV 250
PGEHFAPMGP NGQRSDLNEK SELLHGTVDF LVPSIYNAIQ EKELLPLHYV 300
FLIDVSLLAN ENGSSLAMVE GVRSCIEYIS DFQPNCEVAI IVYDNKLRFF 350
NLRPDLDNAQ EYIVSELDDV FLPFYNGLFV KPGNSMKIIN DTLIKISGYI 400
STDKYSHVPQ VCYGSALQAA KLALDTVTGG QGGKIICSLN SLPTIGNGNL 450
SLKRDNAHIA HVKCDNGFYK KLASDFLKSY ISLDLYVTNA GFIDMATVGH 500
PVEMTSGILK YYPHFQQETD AFTLVNDMVT NVSNIVGYQA LLKVRCSTGL 550
SVEQYYCDSS DNTDHDPIIP VLTRDTTLDV LLKYDSKIKT GTDVHFQTAL 600
LYTDIDGVRK VRSINTSGAV SNNIREIFKF INQNPVMRIM IKDVIKTLGD 650
CDFVKIRRLI DDKMVEILTQ YRGLVSSNSS TQLILPDSIK TLPAYMLAFE 700
KSELMKPNAQ STRGNERIYD LLKYDSLNSA QLCYKLYPQI VPFHVLLEET 750
DLTFYDANDK LLQINSSSIN NLSVRASHSN FINGGCYLIF QGDTIYLWFN 800
ENTNRMLLQD LLSVDESLPV SQISLFSGTL PETGTSINQK ASNVIKNWQQ 850
VVNKSSLPLV LLRPNVDQYY SNVMSQLLCE DKTVNRIESY DNYLVIMHKK 900
IQEKLQKDDF IKVSTAATHE NIHQKFVQF 929
Length:929
Mass (Da):103,950
Last modified:February 1, 1995 - v1
Checksum:i6A028AD6B1A2E031
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00060 Genomic DNA. Translation: AAB68936.1.
AJ009784 Genomic DNA. Translation: CAA08831.1.
BK006934 Genomic DNA. Translation: DAA06792.1.
PIRiS46728.
RefSeqiNP_011966.1. NM_001179228.1.

Genome annotation databases

EnsemblFungiiYHR098C; YHR098C; YHR098C.
GeneIDi856498.
KEGGisce:YHR098C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00060 Genomic DNA. Translation: AAB68936.1 .
AJ009784 Genomic DNA. Translation: CAA08831.1 .
BK006934 Genomic DNA. Translation: DAA06792.1 .
PIRi S46728.
RefSeqi NP_011966.1. NM_001179228.1.

3D structure databases

ProteinModelPortali P38810.
SMRi P38810. Positions 125-905.
ModBasei Search...

Protein-protein interaction databases

BioGridi 36531. 22 interactions.
DIPi DIP-2949N.
IntActi P38810. 10 interactions.
MINTi MINT-509354.
STRINGi 4932.YHR098C.

Proteomic databases

MaxQBi P38810.
PaxDbi P38810.
PeptideAtlasi P38810.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YHR098C ; YHR098C ; YHR098C .
GeneIDi 856498.
KEGGi sce:YHR098C.

Organism-specific databases

CYGDi YHR098c.
SGDi S000001140. SFB3.

Phylogenomic databases

eggNOGi COG5028.
HOGENOMi HOG000141722.
OMAi ATHENIH.
OrthoDBi EOG71K6BX.

Enzyme and pathway databases

BioCyci YEAST:G3O-31143-MONOMER.

Miscellaneous databases

NextBioi 982212.
PROi P38810.

Gene expression databases

Genevestigatori P38810.

Family and domain databases

Gene3Di 3.40.20.10. 1 hit.
3.40.50.410. 1 hit.
InterProi IPR029006. ADF-H/Gelsolin-like_dom.
IPR007123. Gelsolin-like_dom.
IPR006900. Sec23/24_helical_dom.
IPR006896. Sec23/24_trunk_dom.
IPR012990. Sec23_24_beta_S.
IPR002035. VWF_A.
IPR006895. Znf_Sec23_Sec24.
[Graphical view ]
Pfami PF00626. Gelsolin. 1 hit.
PF08033. Sec23_BS. 1 hit.
PF04815. Sec23_helical. 1 hit.
PF04811. Sec23_trunk. 1 hit.
PF04810. zf-Sec23_Sec24. 1 hit.
[Graphical view ]
SUPFAMi SSF53300. SSF53300. 1 hit.
SSF81811. SSF81811. 1 hit.
SSF82919. SSF82919. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. "Evidence for overlapping and distinct functions in protein transport of coat protein Sec24p family members."
    Peng R., De Antoni A., Gallwitz D.
    J. Biol. Chem. 275:11521-11528(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION.
  4. "LST1 is a SEC24 homologue used for selective export of the plasma membrane ATPase from the endoplasmic reticulum."
    Roberg K.J., Crotwell M., Espenshade P., Gimeno R., Kaiser C.A.
    J. Cell Biol. 145:659-672(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: CHARACTERIZATION.
  5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  6. "The yeast orthologue of GRASP65 forms a complex with a coiled-coil protein that contributes to ER to Golgi traffic."
    Behnia R., Barr F.A., Flanagan J.J., Barlowe C., Munro S.
    J. Cell Biol. 176:255-261(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH GRH1.
  7. "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae."
    Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P.
    J. Proteome Res. 6:1190-1197(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-101, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Strain: ADR376.
  8. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-15; SER-94; SER-101 AND THR-216, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  9. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
    Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
    Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-72; SER-83; SER-85; SER-101 AND SER-110, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiSFB3_YEAST
AccessioniPrimary (citable) accession number: P38810
Secondary accession number(s): D3DL48
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: June 11, 2014
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 12200 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

External Data

Dasty 3

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