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P38804

- SDO1L_YEAST

UniProt

P38804 - SDO1L_YEAST

Protein

Restriction of telomere capping protein 3

Gene

RTC3

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    May play a role in RNA metabolism, rRNA-processing, and in a process influencing telomere capping.1 Publication

    GO - Biological processi

    1. RNA metabolic process Source: SGD
    2. rRNA processing Source: UniProtKB-KW

    Keywords - Biological processi

    Ribosome biogenesis, rRNA processing

    Enzyme and pathway databases

    BioCyciYEAST:G3O-31134-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Restriction of telomere capping protein 3
    Gene namesi
    Name:RTC3
    Ordered Locus Names:YHR087W
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome VIII

    Organism-specific databases

    CYGDiYHR087w.
    SGDiS000001129. RTC3.

    Subcellular locationi

    Cytoplasm 1 Publication. Nucleus 1 Publication

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 111111Restriction of telomere capping protein 3PRO_0000202905Add
    BLAST

    Proteomic databases

    MaxQBiP38804.
    PaxDbiP38804.
    PeptideAtlasiP38804.

    Expressioni

    Gene expression databases

    GenevestigatoriP38804.

    Interactioni

    Protein-protein interaction databases

    BioGridi36522. 83 interactions.
    DIPiDIP-2925N.
    IntActiP38804. 1 interaction.
    MINTiMINT-558198.
    STRINGi4932.YHR087W.

    Structurei

    Secondary structure

    1
    111
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi5 – 106
    Beta strandi12 – 2110
    Helixi23 – 319
    Helixi35 – 417
    Beta strandi52 – 543
    Beta strandi56 – 583
    Helixi65 – 728
    Helixi79 – 879
    Beta strandi107 – 1093

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1NYNNMR-A1-111[»]
    ProteinModelPortaliP38804.
    SMRiP38804. Positions 1-111.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP38804.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SDO1-like family.Curated

    Phylogenomic databases

    eggNOGiNOG81974.
    HOGENOMiHOG000216667.
    OMAiGEIHEAS.
    OrthoDBiEOG75J117.

    Family and domain databases

    Gene3Di3.30.1250.10. 1 hit.
    InterProiIPR019783. Ribosome_mat_SBDS_N.
    [Graphical view]
    PfamiPF01172. SBDS. 1 hit.
    [Graphical view]
    SUPFAMiSSF89895. SSF89895. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P38804-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSTVTKYFYK GENTDLIVFA ASEELVDEYL KNPSIGKLSE VVELFEVFTP    50
    QDGRGAEGEL GAASKAQVEN EFGKGKKIEE VIDLILRNGK PNSTTSSLKT 100
    KGGNAGTKAY N 111
    Length:111
    Mass (Da):12,009
    Last modified:February 1, 1995 - v1
    Checksum:i34A95645CAFB51BD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00060 Genomic DNA. Translation: AAB68927.1.
    AY557845 Genomic DNA. Translation: AAS56171.1.
    BK006934 Genomic DNA. Translation: DAA06783.1.
    PIRiS46719.
    RefSeqiNP_011955.1. NM_001179217.1.

    Genome annotation databases

    EnsemblFungiiYHR087W; YHR087W; YHR087W.
    GeneIDi856487.
    KEGGisce:YHR087W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00060 Genomic DNA. Translation: AAB68927.1 .
    AY557845 Genomic DNA. Translation: AAS56171.1 .
    BK006934 Genomic DNA. Translation: DAA06783.1 .
    PIRi S46719.
    RefSeqi NP_011955.1. NM_001179217.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1NYN NMR - A 1-111 [» ]
    ProteinModelPortali P38804.
    SMRi P38804. Positions 1-111.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 36522. 83 interactions.
    DIPi DIP-2925N.
    IntActi P38804. 1 interaction.
    MINTi MINT-558198.
    STRINGi 4932.YHR087W.

    Proteomic databases

    MaxQBi P38804.
    PaxDbi P38804.
    PeptideAtlasi P38804.

    Protocols and materials databases

    DNASUi 856487.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YHR087W ; YHR087W ; YHR087W .
    GeneIDi 856487.
    KEGGi sce:YHR087W.

    Organism-specific databases

    CYGDi YHR087w.
    SGDi S000001129. RTC3.

    Phylogenomic databases

    eggNOGi NOG81974.
    HOGENOMi HOG000216667.
    OMAi GEIHEAS.
    OrthoDBi EOG75J117.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-31134-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P38804.
    NextBioi 982185.

    Gene expression databases

    Genevestigatori P38804.

    Family and domain databases

    Gene3Di 3.30.1250.10. 1 hit.
    InterProi IPR019783. Ribosome_mat_SBDS_N.
    [Graphical view ]
    Pfami PF01172. SBDS. 1 hit.
    [Graphical view ]
    SUPFAMi SSF89895. SSF89895. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    4. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    6. "A genomewide suppressor and enhancer analysis of cdc13-1 reveals varied cellular processes influencing telomere capping in Saccharomyces cerevisiae."
      Addinall S.G., Downey M., Yu M., Zubko M.K., Dewar J., Leake A., Hallinan J., Shaw O., James K., Wilkinson D.J., Wipat A., Durocher D., Lydall D.
      Genetics 180:2251-2266(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.
    7. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
      Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
      Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    8. Cited for: STRUCTURE BY NMR.

    Entry informationi

    Entry nameiSDO1L_YEAST
    AccessioniPrimary (citable) accession number: P38804
    Secondary accession number(s): D3DL39
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: February 1, 1995
    Last modified: October 1, 2014
    This is version 101 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 2430 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome VIII
      Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

    External Data

    Dasty 3