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P38804

- SDO1L_YEAST

UniProt

P38804 - SDO1L_YEAST

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Protein
Restriction of telomere capping protein 3
Gene
RTC3, YHR087W
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

May play a role in RNA metabolism, rRNA-processing, and in a process influencing telomere capping.1 Publication

GO - Biological processi

  1. RNA metabolic process Source: SGD
  2. rRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Enzyme and pathway databases

BioCyciYEAST:G3O-31134-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Restriction of telomere capping protein 3
Gene namesi
Name:RTC3
Ordered Locus Names:YHR087W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VIII

Organism-specific databases

CYGDiYHR087w.
SGDiS000001129. RTC3.

Subcellular locationi

Cytoplasm. Nucleus 1 Publication

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 111111Restriction of telomere capping protein 3
PRO_0000202905Add
BLAST

Proteomic databases

MaxQBiP38804.
PaxDbiP38804.
PeptideAtlasiP38804.

Expressioni

Gene expression databases

GenevestigatoriP38804.

Interactioni

Protein-protein interaction databases

BioGridi36522. 83 interactions.
DIPiDIP-2925N.
IntActiP38804. 1 interaction.
MINTiMINT-558198.
STRINGi4932.YHR087W.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 106
Beta strandi12 – 2110
Helixi23 – 319
Helixi35 – 417
Beta strandi52 – 543
Beta strandi56 – 583
Helixi65 – 728
Helixi79 – 879
Beta strandi107 – 1093

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NYNNMR-A1-111[»]
ProteinModelPortaliP38804.
SMRiP38804. Positions 1-111.

Miscellaneous databases

EvolutionaryTraceiP38804.

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1-like family.

Phylogenomic databases

eggNOGiNOG81974.
HOGENOMiHOG000216667.
OMAiGEIHEAS.
OrthoDBiEOG75J117.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR019783. Ribosome_mat_SBDS_N.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
[Graphical view]
SUPFAMiSSF89895. SSF89895. 1 hit.

Sequencei

Sequence statusi: Complete.

P38804-1 [UniParc]FASTAAdd to Basket

« Hide

MSTVTKYFYK GENTDLIVFA ASEELVDEYL KNPSIGKLSE VVELFEVFTP    50
QDGRGAEGEL GAASKAQVEN EFGKGKKIEE VIDLILRNGK PNSTTSSLKT 100
KGGNAGTKAY N 111
Length:111
Mass (Da):12,009
Last modified:February 1, 1995 - v1
Checksum:i34A95645CAFB51BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00060 Genomic DNA. Translation: AAB68927.1.
AY557845 Genomic DNA. Translation: AAS56171.1.
BK006934 Genomic DNA. Translation: DAA06783.1.
PIRiS46719.
RefSeqiNP_011955.1. NM_001179217.1.

Genome annotation databases

EnsemblFungiiYHR087W; YHR087W; YHR087W.
GeneIDi856487.
KEGGisce:YHR087W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00060 Genomic DNA. Translation: AAB68927.1 .
AY557845 Genomic DNA. Translation: AAS56171.1 .
BK006934 Genomic DNA. Translation: DAA06783.1 .
PIRi S46719.
RefSeqi NP_011955.1. NM_001179217.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1NYN NMR - A 1-111 [» ]
ProteinModelPortali P38804.
SMRi P38804. Positions 1-111.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 36522. 83 interactions.
DIPi DIP-2925N.
IntActi P38804. 1 interaction.
MINTi MINT-558198.
STRINGi 4932.YHR087W.

Proteomic databases

MaxQBi P38804.
PaxDbi P38804.
PeptideAtlasi P38804.

Protocols and materials databases

DNASUi 856487.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YHR087W ; YHR087W ; YHR087W .
GeneIDi 856487.
KEGGi sce:YHR087W.

Organism-specific databases

CYGDi YHR087w.
SGDi S000001129. RTC3.

Phylogenomic databases

eggNOGi NOG81974.
HOGENOMi HOG000216667.
OMAi GEIHEAS.
OrthoDBi EOG75J117.

Enzyme and pathway databases

BioCyci YEAST:G3O-31134-MONOMER.

Miscellaneous databases

EvolutionaryTracei P38804.
NextBioi 982185.

Gene expression databases

Genevestigatori P38804.

Family and domain databases

Gene3Di 3.30.1250.10. 1 hit.
InterProi IPR019783. Ribosome_mat_SBDS_N.
[Graphical view ]
Pfami PF01172. SBDS. 1 hit.
[Graphical view ]
SUPFAMi SSF89895. SSF89895. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  6. "A genomewide suppressor and enhancer analysis of cdc13-1 reveals varied cellular processes influencing telomere capping in Saccharomyces cerevisiae."
    Addinall S.G., Downey M., Yu M., Zubko M.K., Dewar J., Leake A., Hallinan J., Shaw O., James K., Wilkinson D.J., Wipat A., Durocher D., Lydall D.
    Genetics 180:2251-2266(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  7. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiSDO1L_YEAST
AccessioniPrimary (citable) accession number: P38804
Secondary accession number(s): D3DL39
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: July 9, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 2430 molecules/cell in log phase SD medium.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

External Data

Dasty 3

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