Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Restriction of telomere capping protein 3

Gene

RTC3

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in RNA metabolism, rRNA-processing, and in a process influencing telomere capping.1 Publication

GO - Biological processi

  • RNA metabolic process Source: SGD
  • rRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Enzyme and pathway databases

BioCyciYEAST:G3O-31134-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Restriction of telomere capping protein 3
Gene namesi
Name:RTC3
Ordered Locus Names:YHR087W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VIII

Organism-specific databases

EuPathDBiFungiDB:YHR087W.
SGDiS000001129. RTC3.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 111111Restriction of telomere capping protein 3PRO_0000202905Add
BLAST

Proteomic databases

MaxQBiP38804.
TopDownProteomicsiP38804.

PTM databases

iPTMnetiP38804.

Interactioni

Protein-protein interaction databases

BioGridi36522. 82 interactions.
DIPiDIP-2925N.
IntActiP38804. 1 interaction.
MINTiMINT-558198.

Structurei

Secondary structure

1
111
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 106Combined sources
Beta strandi12 – 2110Combined sources
Helixi23 – 319Combined sources
Helixi35 – 417Combined sources
Beta strandi52 – 543Combined sources
Beta strandi56 – 583Combined sources
Helixi65 – 728Combined sources
Helixi79 – 879Combined sources
Beta strandi107 – 1093Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NYNNMR-A1-111[»]
ProteinModelPortaliP38804.
SMRiP38804. Positions 1-111.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP38804.

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1-like family.Curated

Phylogenomic databases

HOGENOMiHOG000216667.
InParanoidiP38804.
OMAiYKGKETD.
OrthoDBiEOG092C5AN8.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR019783. Ribosome_mat_SBDS_N.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
[Graphical view]
SUPFAMiSSF89895. SSF89895. 1 hit.

Sequencei

Sequence statusi: Complete.

P38804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTVTKYFYK GENTDLIVFA ASEELVDEYL KNPSIGKLSE VVELFEVFTP
60 70 80 90 100
QDGRGAEGEL GAASKAQVEN EFGKGKKIEE VIDLILRNGK PNSTTSSLKT
110
KGGNAGTKAY N
Length:111
Mass (Da):12,009
Last modified:February 1, 1995 - v1
Checksum:i34A95645CAFB51BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00060 Genomic DNA. Translation: AAB68927.1.
AY557845 Genomic DNA. Translation: AAS56171.1.
BK006934 Genomic DNA. Translation: DAA06783.1.
PIRiS46719.
RefSeqiNP_011955.1. NM_001179217.1.

Genome annotation databases

EnsemblFungiiYHR087W; YHR087W; YHR087W.
GeneIDi856487.
KEGGisce:YHR087W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00060 Genomic DNA. Translation: AAB68927.1.
AY557845 Genomic DNA. Translation: AAS56171.1.
BK006934 Genomic DNA. Translation: DAA06783.1.
PIRiS46719.
RefSeqiNP_011955.1. NM_001179217.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NYNNMR-A1-111[»]
ProteinModelPortaliP38804.
SMRiP38804. Positions 1-111.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi36522. 82 interactions.
DIPiDIP-2925N.
IntActiP38804. 1 interaction.
MINTiMINT-558198.

PTM databases

iPTMnetiP38804.

Proteomic databases

MaxQBiP38804.
TopDownProteomicsiP38804.

Protocols and materials databases

DNASUi856487.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYHR087W; YHR087W; YHR087W.
GeneIDi856487.
KEGGisce:YHR087W.

Organism-specific databases

EuPathDBiFungiDB:YHR087W.
SGDiS000001129. RTC3.

Phylogenomic databases

HOGENOMiHOG000216667.
InParanoidiP38804.
OMAiYKGKETD.
OrthoDBiEOG092C5AN8.

Enzyme and pathway databases

BioCyciYEAST:G3O-31134-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP38804.
PROiP38804.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR019783. Ribosome_mat_SBDS_N.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
[Graphical view]
SUPFAMiSSF89895. SSF89895. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSDO1L_YEAST
AccessioniPrimary (citable) accession number: P38804
Secondary accession number(s): D3DL39
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: September 7, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 2430 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.