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Protein

Restriction of telomere capping protein 3

Gene

RTC3

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May play a role in RNA metabolism, rRNA-processing, and in a process influencing telomere capping.1 Publication

Miscellaneous

Present with 2430 molecules/cell in log phase SD medium.1 Publication

GO - Molecular functioni

GO - Biological processi

  • RNA metabolic process Source: SGD
  • rRNA processing Source: GO_Central

Keywordsi

Biological processRibosome biogenesis, rRNA processing

Enzyme and pathway databases

BioCyciYEAST:G3O-31134-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Restriction of telomere capping protein 3
Gene namesi
Name:RTC3
Ordered Locus Names:YHR087W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VIII

Organism-specific databases

EuPathDBiFungiDB:YHR087W
SGDiS000001129 RTC3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002029051 – 111Restriction of telomere capping protein 3Add BLAST111

Proteomic databases

MaxQBiP38804
PaxDbiP38804
PRIDEiP38804
TopDownProteomicsiP38804

PTM databases

iPTMnetiP38804

Interactioni

Protein-protein interaction databases

BioGridi36522, 114 interactors
DIPiDIP-2925N
IntActiP38804, 2 interactors
MINTiP38804
STRINGi4932.YHR087W

Structurei

Secondary structure

1111
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 10Combined sources6
Beta strandi12 – 21Combined sources10
Helixi23 – 31Combined sources9
Helixi35 – 41Combined sources7
Beta strandi52 – 54Combined sources3
Beta strandi56 – 58Combined sources3
Helixi65 – 72Combined sources8
Helixi79 – 87Combined sources9
Beta strandi107 – 109Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NYNNMR-A1-111[»]
ProteinModelPortaliP38804
SMRiP38804
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP38804

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1-like family.Curated

Phylogenomic databases

HOGENOMiHOG000216667
InParanoidiP38804
OMAiYKGKETD
OrthoDBiEOG092C5AN8

Family and domain databases

Gene3Di3.30.1250.10, 1 hit
InterProiView protein in InterPro
IPR019783 Ribosome_mat_SBDS_N
IPR036786 Ribosome_mat_SBDS_N_sf
PfamiView protein in Pfam
PF01172 SBDS, 1 hit
SUPFAMiSSF89895 SSF89895, 1 hit

Sequencei

Sequence statusi: Complete.

P38804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTVTKYFYK GENTDLIVFA ASEELVDEYL KNPSIGKLSE VVELFEVFTP
60 70 80 90 100
QDGRGAEGEL GAASKAQVEN EFGKGKKIEE VIDLILRNGK PNSTTSSLKT
110
KGGNAGTKAY N
Length:111
Mass (Da):12,009
Last modified:February 1, 1995 - v1
Checksum:i34A95645CAFB51BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00060 Genomic DNA Translation: AAB68927.1
AY557845 Genomic DNA Translation: AAS56171.1
BK006934 Genomic DNA Translation: DAA06783.1
PIRiS46719
RefSeqiNP_011955.1, NM_001179217.1

Genome annotation databases

EnsemblFungiiYHR087W; YHR087W; YHR087W
GeneIDi856487
KEGGisce:YHR087W

Similar proteinsi

Entry informationi

Entry nameiSDO1L_YEAST
AccessioniPrimary (citable) accession number: P38804
Secondary accession number(s): D3DL39
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: May 23, 2018
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

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