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Protein

Box C/D snoRNA protein 1

Gene

BCD1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri5 – 39HIT-typePROSITE-ProRule annotationAdd BLAST35

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • nucleic acid binding Source: SGD

GO - Biological processi

  • ribosome biogenesis Source: UniProtKB-KW
  • snoRNA metabolic process Source: SGD
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-31099-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Box C/D snoRNA protein 1
Gene namesi
Name:BCD1
Ordered Locus Names:YHR040W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VIII

Organism-specific databases

EuPathDBiFungiDB:YHR040W.
SGDiS000001082. BCD1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001735581 – 366Box C/D snoRNA protein 1Add BLAST366

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei330PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP38772.
PRIDEiP38772.

PTM databases

iPTMnetiP38772.

Interactioni

Protein-protein interaction databases

BioGridi36472. 6 interactors.
DIPiDIP-3862N.
IntActiP38772. 7 interactors.
MINTiMINT-512945.

Structurei

Secondary structure

1366
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 8Combined sources3
Turni18 – 20Combined sources3
Helixi27 – 37Combined sources11
Beta strandi41 – 43Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2N94NMR-A1-45[»]
ProteinModelPortaliP38772.
SMRiP38772.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the BCD1 family.Curated
Contains 1 HIT-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri5 – 39HIT-typePROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

Zinc-finger

Phylogenomic databases

GeneTreeiENSGT00390000017201.
HOGENOMiHOG000000870.
InParanoidiP38772.
OMAiECQRIIR.
OrthoDBiEOG092C16CL.

Family and domain databases

InterProiIPR007529. Znf_HIT.
[Graphical view]
PfamiPF04438. zf-HIT. 1 hit.
[Graphical view]
PROSITEiPS51083. ZF_HIT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P38772-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVLCGVCGI KEFKYKCPRC LVQTCSLECS KKHKTRDNCS GQTHDPKEYI
60 70 80 90 100
SSEALKQADD DKHERNAYVQ RDYNYLTQLK RMVHVQKMDA RMKNKRVLGP
110 120 130 140 150
VGGHNSNFKK RRYDIDEDDR DSTECQRIIR RGVNCLMLPK GMQRSSQNRS
160 170 180 190 200
KWDKTMDLFV WSVEWILCPM QEKGEKKELF KHVSHRIKET DFLVQGMGKN
210 220 230 240 250
VFQKCCEFYR LAGTSSCIEG EDGSETKEER TQILQKSGLK FYTKTFPYNT
260 270 280 290 300
THIMDSKKLV ELAIHEKCIG ELLKNTTVIE FPTIFVAMTE ADLPEGYEVL
310 320 330 340 350
HQEPRPLEHT STLNKFIDNA REEEDAEEDS QPTEEPVQKE TQDASDSDSD
360
SDDDYNPGLS MDFLTA
Length:366
Mass (Da):42,334
Last modified:February 1, 1995 - v1
Checksum:iEE8BDAF489EC1F12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00062 Genomic DNA. Translation: AAB68905.1.
BK006934 Genomic DNA. Translation: DAA06732.1.
PIRiS46736.
RefSeqiNP_011906.1. NM_001179170.1.

Genome annotation databases

EnsemblFungiiYHR040W; YHR040W; YHR040W.
GeneIDi856436.
KEGGisce:YHR040W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00062 Genomic DNA. Translation: AAB68905.1.
BK006934 Genomic DNA. Translation: DAA06732.1.
PIRiS46736.
RefSeqiNP_011906.1. NM_001179170.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2N94NMR-A1-45[»]
ProteinModelPortaliP38772.
SMRiP38772.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi36472. 6 interactors.
DIPiDIP-3862N.
IntActiP38772. 7 interactors.
MINTiMINT-512945.

PTM databases

iPTMnetiP38772.

Proteomic databases

MaxQBiP38772.
PRIDEiP38772.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYHR040W; YHR040W; YHR040W.
GeneIDi856436.
KEGGisce:YHR040W.

Organism-specific databases

EuPathDBiFungiDB:YHR040W.
SGDiS000001082. BCD1.

Phylogenomic databases

GeneTreeiENSGT00390000017201.
HOGENOMiHOG000000870.
InParanoidiP38772.
OMAiECQRIIR.
OrthoDBiEOG092C16CL.

Enzyme and pathway databases

BioCyciYEAST:G3O-31099-MONOMER.

Miscellaneous databases

PROiP38772.

Family and domain databases

InterProiIPR007529. Znf_HIT.
[Graphical view]
PfamiPF04438. zf-HIT. 1 hit.
[Graphical view]
PROSITEiPS51083. ZF_HIT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiBCD1_YEAST
AccessioniPrimary (citable) accession number: P38772
Secondary accession number(s): D3DKY8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: November 2, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 2800 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.