SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P38772

- BCD1_YEAST

UniProt

P38772 - BCD1_YEAST

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Box C/D snoRNA protein 1
Gene
BCD1, YHR040W
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri5 – 3935HIT-type
Add
BLAST

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. nucleic acid binding Source: SGD

GO - Biological processi

  1. ribosome biogenesis Source: UniProtKB-KW
  2. snoRNA metabolic process Source: SGD
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-31099-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Box C/D snoRNA protein 1
Gene namesi
Name:BCD1
Ordered Locus Names:YHR040W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VIII

Organism-specific databases

CYGDiYHR040w.
SGDiS000001082. BCD1.

Subcellular locationi

Cytoplasm. Nucleus 2 Publications

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 366366Box C/D snoRNA protein 1
PRO_0000173558Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei330 – 3301Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP38772.
PaxDbiP38772.
PeptideAtlasiP38772.

Expressioni

Gene expression databases

GenevestigatoriP38772.

Interactioni

Protein-protein interaction databases

BioGridi36472. 7 interactions.
DIPiDIP-3862N.
IntActiP38772. 7 interactions.
MINTiMINT-512945.
STRINGi4932.YHR040W.

Structurei

3D structure databases

ProteinModelPortaliP38772.
SMRiP38772. Positions 2-48.

Family & Domainsi

Sequence similaritiesi

Belongs to the BCD1 family.

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG279669.
GeneTreeiENSGT00390000017201.
HOGENOMiHOG000000870.
OMAiDAVPMNI.
OrthoDBiEOG7ZSJ63.

Family and domain databases

InterProiIPR007529. Znf_HIT.
[Graphical view]
PfamiPF04438. zf-HIT. 1 hit.
[Graphical view]
PROSITEiPS51083. ZF_HIT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P38772-1 [UniParc]FASTAAdd to Basket

« Hide

MAVLCGVCGI KEFKYKCPRC LVQTCSLECS KKHKTRDNCS GQTHDPKEYI    50
SSEALKQADD DKHERNAYVQ RDYNYLTQLK RMVHVQKMDA RMKNKRVLGP 100
VGGHNSNFKK RRYDIDEDDR DSTECQRIIR RGVNCLMLPK GMQRSSQNRS 150
KWDKTMDLFV WSVEWILCPM QEKGEKKELF KHVSHRIKET DFLVQGMGKN 200
VFQKCCEFYR LAGTSSCIEG EDGSETKEER TQILQKSGLK FYTKTFPYNT 250
THIMDSKKLV ELAIHEKCIG ELLKNTTVIE FPTIFVAMTE ADLPEGYEVL 300
HQEPRPLEHT STLNKFIDNA REEEDAEEDS QPTEEPVQKE TQDASDSDSD 350
SDDDYNPGLS MDFLTA 366
Length:366
Mass (Da):42,334
Last modified:February 1, 1995 - v1
Checksum:iEE8BDAF489EC1F12
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00062 Genomic DNA. Translation: AAB68905.1.
BK006934 Genomic DNA. Translation: DAA06732.1.
PIRiS46736.
RefSeqiNP_011906.1. NM_001179170.1.

Genome annotation databases

EnsemblFungiiYHR040W; YHR040W; YHR040W.
GeneIDi856436.
KEGGisce:YHR040W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00062 Genomic DNA. Translation: AAB68905.1 .
BK006934 Genomic DNA. Translation: DAA06732.1 .
PIRi S46736.
RefSeqi NP_011906.1. NM_001179170.1.

3D structure databases

ProteinModelPortali P38772.
SMRi P38772. Positions 2-48.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 36472. 7 interactions.
DIPi DIP-3862N.
IntActi P38772. 7 interactions.
MINTi MINT-512945.
STRINGi 4932.YHR040W.

Proteomic databases

MaxQBi P38772.
PaxDbi P38772.
PeptideAtlasi P38772.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YHR040W ; YHR040W ; YHR040W .
GeneIDi 856436.
KEGGi sce:YHR040W.

Organism-specific databases

CYGDi YHR040w.
SGDi S000001082. BCD1.

Phylogenomic databases

eggNOGi NOG279669.
GeneTreei ENSGT00390000017201.
HOGENOMi HOG000000870.
OMAi DAVPMNI.
OrthoDBi EOG7ZSJ63.

Enzyme and pathway databases

BioCyci YEAST:G3O-31099-MONOMER.

Miscellaneous databases

NextBioi 982036.

Gene expression databases

Genevestigatori P38772.

Family and domain databases

InterProi IPR007529. Znf_HIT.
[Graphical view ]
Pfami PF04438. zf-HIT. 1 hit.
[Graphical view ]
PROSITEi PS51083. ZF_HIT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: FUNCTION.
  4. Cited for: SUBCELLULAR LOCATION.
  5. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  7. "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae."
    Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P.
    J. Proteome Res. 6:1190-1197(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Strain: ADR376.
  8. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-330, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiBCD1_YEAST
AccessioniPrimary (citable) accession number: P38772
Secondary accession number(s): D3DKY8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: May 14, 2014
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 2800 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome VIII
    Yeast (Saccharomyces cerevisiae) chromosome VIII: entries and gene names

External Data

Dasty 3

Similar proteinsi