P38666 (RL242_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L24-2

Alternative name(s):
Protein SHORT VALVE 1

Gene names

Name:	RPL24B
Synonyms:	STV1
Ordered Locus Names:	At3g53020
ORF Names:	F8J2_190

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	163 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning. Ref.1
Subcellular location	Cytoplasm.
Tissue specificity	Ubiquitous. Ref.1
Sequence similarities	Belongs to the ribosomal protein L24e family.
Sequence caution	The sequence Z26463 differs from that shown. Reason: Frameshift at positions 126 and 149.

Ontologies

Keywords
Cellular component	Cytoplasm
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	auxin mediated signaling pathway Inferred from mutant phenotype Ref.1. Source: TAIR gynoecium development Inferred from mutant phenotype Ref.1. Source: TAIR translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytosolic large ribosomal subunit Inferred from direct assay. Source: TAIR nucleolus Inferred from direct assay. Source: TAIR
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 163	163	60S ribosomal protein L24-2		PRO_0000136881
Experimental info
	Sequence conflict	56	1	M → I in Z26463. Ref.5
	Sequence conflict	124	1	D → V Ref.5

Sequences

	Sequence		Length	Mass (Da)
	P38666 [UniParc]. Last modified December 6, 2002. Version 2. Checksum: C7CC84855277E924	FASTA	163	18,632
	10 20 30 40 50 60 MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK LAWTAMYRKQ 70 80 90 100 110 120 HKKDAAQEAV KRRRRATKKP YSRSIVGATL EVIQKKRAEK PEVRDAAREA ALREIKERIK 130 140 150 160 KTKDEKKAKK VEFASKQQKV KANFPKAAAA SKGPKVGGGG GKR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning." Nishimura T., Wada T., Yamamoto K.T., Okada K. Plant Cell 17:2940-2953(2005) [PubMed: 16227452] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY. Strain: cv. Landsberg erecta.
[2]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[4]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[5]	"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs." Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J. , Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H. Plant J. 9:101-124(1996) [PubMed: 8580968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[6]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 109-163. Strain: cv. Columbia.
[7]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB199790 mRNA. Translation: BAE48150.1. AL132969 Genomic DNA. Translation: CAB86906.1. CP002686 Genomic DNA. Translation: AEE79026.1. AY058129 mRNA. Translation: AAL25545.1. AY093180 mRNA. Translation: AAM13179.1. BT006545 mRNA. Translation: AAP21353.1. Z26463 mRNA. No translation available. AK221088 mRNA. Translation: BAD94945.1.
IPI	IPI00547637.
PIR	T47559.
RefSeq	NP_190870.1. NM_115162.3.
UniGene	At.22369. At.32892. At.66502. At.71926.
3D structure databases
ProteinModelPortal	P38666.
SMR	P38666. Positions 1-75.
ModBase	Search...
Protein-protein interaction databases
STRING	P38666.
Proteomic databases
PRIDE	P38666.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G53020.1; AT3G53020.1; AT3G53020.
GeneID	824468.
GenomeReviews	Gene locus AT3G53020 in contig BA000014_GR.
KEGG	ath:AT3G53020.
NMPDR	fig|3702.1.peg.16577.
Organism-specific databases
GeneFarm	255. 23.
TAIR	At3g53020.
Phylogenomic databases
eggNOG	KOG1722.
GeneTree	EPGT00050000012817.
HOGENOM	HBG600564.
InParanoid	P38666.
OMA	IHPGHGK.
PhylomeDB	P38666.
ProtClustDB	CLSN2684901.
Gene expression databases
ArrayExpress	P38666.
Genevestigator	P38666.
GermOnline	AT3G53020. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR023442. Ribosomal_L24e_CS. IPR023441. Ribosomal_L24e_dom. IPR000988. Ribosomal_L24e_rel. [Graphical view]
Gene3D	G3DSA:2.30.170.20. Ribosomal_L24E. 1 hit.
KO	K02896.
PANTHER	PTHR10792. Ribosomal_L24E. 1 hit.
Pfam	PF01246. Ribosomal_L24e. 1 hit. [Graphical view]
PROSITE	PS01073. RIBOSOMAL_L24E. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL242_ARATH

Accession

Primary (citable) accession number: P38666
Secondary accession number(s): Q33DV0, Q56Z81, Q9LF90

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1995
Last sequence update:	December 6, 2002
Last modified:	November 16, 2011
This is version 80 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program