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Protein

60S ribosomal protein L24-2

Gene

RPL24B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning.1 Publication

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • assembly of large subunit precursor of preribosome Source: GO_Central
  • auxin-activated signaling pathway Source: TAIR
  • gynoecium development Source: TAIR
  • ribosomal large subunit assembly Source: GO_Central
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L24-2
Alternative name(s):
Protein SHORT VALVE 1
Gene namesi
Name:RPL24B
Synonyms:STV1
Ordered Locus Names:At3g53020
ORF Names:F8J2_190
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G53020
TAIRilocus:2085246 AT3G53020

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001368811 – 16360S ribosomal protein L24-2Add BLAST163

Proteomic databases

PaxDbiP38666
PRIDEiP38666

PTM databases

iPTMnetiP38666

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

ExpressionAtlasiP38666 baseline and differential
GenevisibleiP38666 AT

Interactioni

Subunit structurei

Interacts with REIL1 AND REIL2.1 Publication

Protein-protein interaction databases

BioGridi9785, 5 interactors
IntActiP38666, 1 interactor
STRINGi3702.AT3G53020.1

Structurei

3D structure databases

ProteinModelPortaliP38666
SMRiP38666
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1722 Eukaryota
COG2075 LUCA
HOGENOMiHOG000184343
InParanoidiP38666
KOiK02896
OMAiPEVRMAQ
OrthoDBiEOG09360TX2
PhylomeDBiP38666

Family and domain databases

CDDicd00472 Ribosomal_L24e_L24, 1 hit
Gene3Di2.30.170.20, 1 hit
InterProiView protein in InterPro
IPR038630 L24e/L24_sf
IPR000988 Ribosomal_L24e-rel
IPR023442 Ribosomal_L24e_CS
IPR011017 TRASH_dom
PANTHERiPTHR10792 PTHR10792, 1 hit
PfamiView protein in Pfam
PF01246 Ribosomal_L24e, 1 hit
SMARTiView protein in SMART
SM00746 TRASH, 1 hit
PROSITEiView protein in PROSITE
PS01073 RIBOSOMAL_L24E, 1 hit

Sequencei

Sequence statusi: Complete.

P38666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK
60 70 80 90 100
LAWTAMYRKQ HKKDAAQEAV KRRRRATKKP YSRSIVGATL EVIQKKRAEK
110 120 130 140 150
PEVRDAAREA ALREIKERIK KTKDEKKAKK VEFASKQQKV KANFPKAAAA
160
SKGPKVGGGG GKR
Length:163
Mass (Da):18,632
Last modified:December 6, 2002 - v2
Checksum:iC7CC84855277E924
GO

Sequence cautioni

The sequence Z26463 differs from that shown. Reason: Frameshift at positions 126 and 149.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti56M → I in Z26463 (PubMed:8580968).Curated1
Sequence conflicti124D → V (PubMed:8580968).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB199790 mRNA Translation: BAE48150.1
AL132969 Genomic DNA Translation: CAB86906.1
CP002686 Genomic DNA Translation: AEE79026.1
AY058129 mRNA Translation: AAL25545.1
AY093180 mRNA Translation: AAM13179.1
BT006545 mRNA Translation: AAP21353.1
Z26463 mRNA No translation available.
AK221088 mRNA Translation: BAD94945.1
PIRiT47559
RefSeqiNP_190870.1, NM_115162.4
UniGeneiAt.22369
At.32892
At.66502
At.71926

Genome annotation databases

EnsemblPlantsiAT3G53020.1; AT3G53020.1; AT3G53020
GeneIDi824468
GrameneiAT3G53020.1; AT3G53020.1; AT3G53020
KEGGiath:AT3G53020

Similar proteinsi

Entry informationi

Entry nameiRL242_ARATH
AccessioniPrimary (citable) accession number: P38666
Secondary accession number(s): Q33DV0, Q56Z81, Q9LF90
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 6, 2002
Last modified: April 25, 2018
This is version 127 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health