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Protein

60S ribosomal protein L24-2

Gene

RPL24B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning.1 Publication

GO - Molecular functioni

GO - Biological processi

  • assembly of large subunit precursor of preribosome Source: GO_Central
  • auxin-activated signaling pathway Source: TAIR
  • gynoecium development Source: TAIR
  • ribosomal large subunit assembly Source: GO_Central
  • translation Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L24-2
Alternative name(s):
Protein SHORT VALVE 1
Gene namesi
Name:RPL24B
Synonyms:STV1
Ordered Locus Names:At3g53020
ORF Names:F8J2_190
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G53020.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • nucleolus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001368811 – 16360S ribosomal protein L24-2Add BLAST163

Proteomic databases

PaxDbiP38666.
PRIDEiP38666.

PTM databases

iPTMnetiP38666.

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

GenevisibleiP38666. AT.

Interactioni

Subunit structurei

Interacts with REIL1 AND REIL2.1 Publication

Protein-protein interaction databases

BioGridi9785. 5 interactors.
IntActiP38666. 1 interactor.
STRINGi3702.AT3G53020.1.

Structurei

3D structure databases

ProteinModelPortaliP38666.
SMRiP38666.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24e family.Curated

Phylogenomic databases

eggNOGiKOG1722. Eukaryota.
COG2075. LUCA.
HOGENOMiHOG000184343.
InParanoidiP38666.
KOiK02896.
OMAiLCNFSGY.
OrthoDBiEOG09360TX2.
PhylomeDBiP38666.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
InterProiIPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P38666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK
60 70 80 90 100
LAWTAMYRKQ HKKDAAQEAV KRRRRATKKP YSRSIVGATL EVIQKKRAEK
110 120 130 140 150
PEVRDAAREA ALREIKERIK KTKDEKKAKK VEFASKQQKV KANFPKAAAA
160
SKGPKVGGGG GKR
Length:163
Mass (Da):18,632
Last modified:December 6, 2002 - v2
Checksum:iC7CC84855277E924
GO

Sequence cautioni

The sequence Z26463 differs from that shown. Reason: Frameshift at positions 126 and 149.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti56M → I in Z26463 (PubMed:8580968).Curated1
Sequence conflicti124D → V (PubMed:8580968).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB199790 mRNA. Translation: BAE48150.1.
AL132969 Genomic DNA. Translation: CAB86906.1.
CP002686 Genomic DNA. Translation: AEE79026.1.
AY058129 mRNA. Translation: AAL25545.1.
AY093180 mRNA. Translation: AAM13179.1.
BT006545 mRNA. Translation: AAP21353.1.
Z26463 mRNA. No translation available.
AK221088 mRNA. Translation: BAD94945.1.
PIRiT47559.
RefSeqiNP_190870.1. NM_115162.4.
UniGeneiAt.22369.
At.32892.
At.66502.
At.71926.

Genome annotation databases

EnsemblPlantsiAT3G53020.1; AT3G53020.1; AT3G53020.
GeneIDi824468.
GrameneiAT3G53020.1; AT3G53020.1; AT3G53020.
KEGGiath:AT3G53020.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB199790 mRNA. Translation: BAE48150.1.
AL132969 Genomic DNA. Translation: CAB86906.1.
CP002686 Genomic DNA. Translation: AEE79026.1.
AY058129 mRNA. Translation: AAL25545.1.
AY093180 mRNA. Translation: AAM13179.1.
BT006545 mRNA. Translation: AAP21353.1.
Z26463 mRNA. No translation available.
AK221088 mRNA. Translation: BAD94945.1.
PIRiT47559.
RefSeqiNP_190870.1. NM_115162.4.
UniGeneiAt.22369.
At.32892.
At.66502.
At.71926.

3D structure databases

ProteinModelPortaliP38666.
SMRiP38666.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9785. 5 interactors.
IntActiP38666. 1 interactor.
STRINGi3702.AT3G53020.1.

PTM databases

iPTMnetiP38666.

Proteomic databases

PaxDbiP38666.
PRIDEiP38666.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G53020.1; AT3G53020.1; AT3G53020.
GeneIDi824468.
GrameneiAT3G53020.1; AT3G53020.1; AT3G53020.
KEGGiath:AT3G53020.

Organism-specific databases

TAIRiAT3G53020.

Phylogenomic databases

eggNOGiKOG1722. Eukaryota.
COG2075. LUCA.
HOGENOMiHOG000184343.
InParanoidiP38666.
KOiK02896.
OMAiLCNFSGY.
OrthoDBiEOG09360TX2.
PhylomeDBiP38666.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP38666.

Gene expression databases

GenevisibleiP38666. AT.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
InterProiIPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL242_ARATH
AccessioniPrimary (citable) accession number: P38666
Secondary accession number(s): Q33DV0, Q56Z81, Q9LF90
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: December 6, 2002
Last modified: November 30, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.