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P38276

- YBY7_YEAST

UniProt

P38276 - YBY7_YEAST

Protein

UPF0303 protein YBR137W

Gene

YBR137W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 102 (01 Oct 2014)
      Sequence version 4 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29091-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0303 protein YBR137W
    Gene namesi
    Ordered Locus Names:YBR137W
    ORF Names:YBR1013
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome II

    Organism-specific databases

    SGDiS000000341. YBR137W.

    Subcellular locationi

    Cytoplasm 1 Publication

    GO - Cellular componenti

    1. cytoplasm Source: SGD
    2. TRC complex Source: SGD

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 179179UPF0303 protein YBR137WPRO_0000208926Add
    BLAST

    Proteomic databases

    MaxQBiP38276.
    PaxDbiP38276.
    PeptideAtlasiP38276.

    Expressioni

    Gene expression databases

    GenevestigatoriP38276.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    itself1EBI-21630,EBI-21630
    NUP116Q026301EBI-21630,EBI-11703
    SRP1Q028211EBI-21630,EBI-1797
    TEM1P389871EBI-21630,EBI-19113

    Protein-protein interaction databases

    BioGridi32837. 14 interactions.
    DIPiDIP-2038N.
    IntActiP38276. 7 interactions.
    MINTiMINT-559422.
    STRINGi4932.YBR137W.

    Structurei

    3D structure databases

    ProteinModelPortaliP38276.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the UPF0303 family.Curated

    Phylogenomic databases

    eggNOGiCOG4702.
    HOGENOMiHOG000244036.
    OMAiFTTEDAF.
    OrthoDBiEOG7C8GV2.

    Family and domain databases

    InterProiIPR005624. DUF336.
    IPR010371. UPF0303.
    [Graphical view]
    PfamiPF03928. DUF336. 1 hit.
    [Graphical view]
    PIRSFiPIRSF008757. UCP008757. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P38276-1 [UniParc]FASTAAdd to Basket

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    MVVLDKKLLE RLTSRKVPLE ELEDMEKRCF LSTFTYQDAF DLGTYIRNAV    50
    KENFPEKPVA IDISLPNGHC LFRTVTYGGS ALDNDFWIQR KKKTALRFGH 100
    SSFYMGCKKG DKTPEEKFFV DSKEYAFHGG AVLIQSERSD YPYACLTISG 150
    LKQEEDHLMA VSSLIAFANE SLEEDLNLD 179
    Length:179
    Mass (Da):20,454
    Last modified:July 27, 2011 - v4
    Checksum:i8CBA454492E29273
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti110 – 1101G → S in CAA53495. (PubMed:8091856)Curated
    Sequence conflicti110 – 1101G → S in CAA85095. (PubMed:7813418)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D11088 Genomic DNA. Translation: BAA01861.1.
    X75891 Genomic DNA. Translation: CAA53495.1.
    Z36006 Genomic DNA. Translation: CAA85095.1.
    AY558187 Genomic DNA. Translation: AAS56513.1.
    BK006936 Genomic DNA. Translation: DAA07253.2.
    PIRiS46006.
    RefSeqiNP_009695.2. NM_001178485.2.

    Genome annotation databases

    EnsemblFungiiYBR137W; YBR137W; YBR137W.
    GeneIDi852434.
    KEGGisce:YBR137W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D11088 Genomic DNA. Translation: BAA01861.1 .
    X75891 Genomic DNA. Translation: CAA53495.1 .
    Z36006 Genomic DNA. Translation: CAA85095.1 .
    AY558187 Genomic DNA. Translation: AAS56513.1 .
    BK006936 Genomic DNA. Translation: DAA07253.2 .
    PIRi S46006.
    RefSeqi NP_009695.2. NM_001178485.2.

    3D structure databases

    ProteinModelPortali P38276.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 32837. 14 interactions.
    DIPi DIP-2038N.
    IntActi P38276. 7 interactions.
    MINTi MINT-559422.
    STRINGi 4932.YBR137W.

    Proteomic databases

    MaxQBi P38276.
    PaxDbi P38276.
    PeptideAtlasi P38276.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YBR137W ; YBR137W ; YBR137W .
    GeneIDi 852434.
    KEGGi sce:YBR137W.

    Organism-specific databases

    SGDi S000000341. YBR137W.

    Phylogenomic databases

    eggNOGi COG4702.
    HOGENOMi HOG000244036.
    OMAi FTTEDAF.
    OrthoDBi EOG7C8GV2.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29091-MONOMER.

    Miscellaneous databases

    NextBioi 971321.

    Gene expression databases

    Genevestigatori P38276.

    Family and domain databases

    InterProi IPR005624. DUF336.
    IPR010371. UPF0303.
    [Graphical view ]
    Pfami PF03928. DUF336. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF008757. UCP008757. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "An essential gene, ESR1, is required for mitotic cell growth, DNA repair and meiotic recombination in Saccharomyces cerevisiae."
      Kato R., Ogawa H.
      Nucleic Acids Res. 22:3104-3112(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "The sequence of 29.7 kb from the right arm of chromosome II reveals 13 complete open reading frames, of which ten correspond to new genes."
      Becam A.-M., Cullin C., Grzybowska E., Lacroute F., Nasr F., Ozier-Kalogeropoulos O., Palucha A., Slonimski P.P., Zagulski M., Herbert C.J.
      Yeast 10:S1-S11(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    3. "Complete DNA sequence of yeast chromosome II."
      Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C.
      , Demolis N., Delaveau T., Doignon F., Domdey H., Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D., Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N., Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J., Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C., Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P., Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y., Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F., Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E., Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M., Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B., Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L., Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M., Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S., Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K., Mewes H.-W., Kleine K.
      EMBO J. 13:5795-5809(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    4. Cited for: GENOME REANNOTATION, SEQUENCE REVISION TO 110.
      Strain: ATCC 204508 / S288c.
    5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    6. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    8. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiYBY7_YEAST
    AccessioniPrimary (citable) accession number: P38276
    Secondary accession number(s): D6VQD3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1994
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 102 of the entry and version 4 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 1200 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome II
      Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

    External Data

    Dasty 3