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P38239

- YBR2_YEAST

UniProt

P38239 - YBR2_YEAST

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Protein

Uncharacterized RING finger protein YBR062C

Gene
YBR062C, YBR0528
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri109 – 15345RING-typeAdd
BLAST

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-29032-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RING finger protein YBR062C
Gene namesi
Ordered Locus Names:YBR062C
ORF Names:YBR0528
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome II

Organism-specific databases

CYGDiYBR062c.
SGDiS000000266. YBR062C.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 180179Uncharacterized RING finger protein YBR062CPRO_0000056335Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylserine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiP38239.
PaxDbiP38239.

Expressioni

Gene expression databases

GenevestigatoriP38239.

Interactioni

Protein-protein interaction databases

BioGridi32766. 7 interactions.
MINTiMINT-2493203.
STRINGi4932.YBR062C.

Structurei

3D structure databases

ProteinModelPortaliP38239.
SMRiP38239. Positions 109-153.

Family & Domainsi

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri109 – 15345RING-typeAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG258882.
HOGENOMiHOG000214894.
OMAiSTYEEEH.
OrthoDBiEOG7RJQ12.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P38239-1 [UniParc]FASTAAdd to Basket

« Hide

MSTYEEEHGI QQNSRDYQEV GGTSQEEQRR QVRSQLQGLF QNFGNTSGEG    50
DAHSDSTLLL RLLSQMLPES LQEEWLQEMD KGKSAGCPDT FAASLPRINK 100
KKLKATDNCS ICYTNYLEDE YPLVVELPHC HHKFDLECLS VWLSRSTTCP 150
LCRDNVMGHR IINEIDTTEA ELEEDWGMYG 180
Length:180
Mass (Da):20,596
Last modified:September 13, 2005 - v2
Checksum:i858ECAAC97F48809
GO

Sequence cautioni

The sequence CAA85005.1 differs from that shown. Reason: Frameshift at position 33.
The sequence CAA85005.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z35931 Genomic DNA. Translation: CAA85005.1. Sequence problems.
BK006936 Genomic DNA. Translation: DAA07182.1.
PIRiS45920.
RefSeqiNP_009618.2. NM_001178410.1.

Genome annotation databases

EnsemblFungiiYBR062C; YBR062C; YBR062C.
GeneIDi852354.
KEGGisce:YBR062C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z35931 Genomic DNA. Translation: CAA85005.1 . Sequence problems.
BK006936 Genomic DNA. Translation: DAA07182.1 .
PIRi S45920.
RefSeqi NP_009618.2. NM_001178410.1.

3D structure databases

ProteinModelPortali P38239.
SMRi P38239. Positions 109-153.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 32766. 7 interactions.
MINTi MINT-2493203.
STRINGi 4932.YBR062C.

Proteomic databases

MaxQBi P38239.
PaxDbi P38239.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YBR062C ; YBR062C ; YBR062C .
GeneIDi 852354.
KEGGi sce:YBR062C.

Organism-specific databases

CYGDi YBR062c.
SGDi S000000266. YBR062C.

Phylogenomic databases

eggNOGi NOG258882.
HOGENOMi HOG000214894.
OMAi STYEEEH.
OrthoDBi EOG7RJQ12.

Enzyme and pathway databases

BioCyci YEAST:G3O-29032-MONOMER.

Miscellaneous databases

NextBioi 971110.

Gene expression databases

Genevestigatori P38239.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
InterProi IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view ]
Pfami PF13639. zf-RING_2. 1 hit.
[Graphical view ]
SMARTi SM00184. RING. 1 hit.
[Graphical view ]
PROSITEi PS50089. ZF_RING_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete DNA sequence of yeast chromosome II."
    Feldmann H., Aigle M., Aljinovic G., Andre B., Baclet M.C., Barthe C., Baur A., Becam A.-M., Biteau N., Boles E., Brandt T., Brendel M., Brueckner M., Bussereau F., Christiansen C., Contreras R., Crouzet M., Cziepluch C.
    , Demolis N., Delaveau T., Doignon F., Domdey H., Duesterhus S., Dubois E., Dujon B., El Bakkoury M., Entian K.-D., Feuermann M., Fiers W., Fobo G.M., Fritz C., Gassenhuber J., Glansdorff N., Goffeau A., Grivell L.A., de Haan M., Hein C., Herbert C.J., Hollenberg C.P., Holmstroem K., Jacq C., Jacquet M., Jauniaux J.-C., Jonniaux J.-L., Kallesoee T., Kiesau P., Kirchrath L., Koetter P., Korol S., Liebl S., Logghe M., Lohan A.J.E., Louis E.J., Li Z.Y., Maat M.J., Mallet L., Mannhaupt G., Messenguy F., Miosga T., Molemans F., Mueller S., Nasr F., Obermaier B., Perea J., Pierard A., Piravandi E., Pohl F.M., Pohl T.M., Potier S., Proft M., Purnelle B., Ramezani Rad M., Rieger M., Rose M., Schaaff-Gerstenschlaeger I., Scherens B., Schwarzlose C., Skala J., Slonimski P.P., Smits P.H.M., Souciet J.-L., Steensma H.Y., Stucka R., Urrestarazu L.A., van der Aart Q.J.M., Van Dyck L., Vassarotti A., Vetter I., Vierendeels F., Vissers S., Wagner G., de Wergifosse P., Wolfe K.H., Zagulski M., Zimmermann F.K., Mewes H.-W., Kleine K.
    EMBO J. 13:5795-5809(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. "Finding functional features in Saccharomyces genomes by phylogenetic footprinting."
    Cliften P.F., Sudarsanam P., Desikan A., Fulton L., Fulton B., Majors J., Waterston R., Cohen B.A., Johnston M.
    Science 301:71-76(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVISION OF GENE MODEL.
  4. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  5. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYBR2_YEAST
AccessioniPrimary (citable) accession number: P38239
Secondary accession number(s): D6VQ62
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: September 13, 2005
Last modified: May 14, 2014
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 195 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome II
    Yeast (Saccharomyces cerevisiae) chromosome II: entries and gene names

External Data

Dasty 3

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